ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl22c07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC163498.3| Mus musculus chromosome 1, clone RP23-86J11, comp... 44 0.20
2gb|AC025116.14| Mus musculus chromosome 1, clone RP23-124O19, co... 44 0.20
3gb|AC146522.2| Oryza sativa (japonica cultivar-group) chromosome... 42 0.79
4emb|BX936312.12| Zebrafish DNA sequence from clone DKEY-204O5 in... 42 0.79
5gb|AC102561.4| Mus musculus chromosome 7, clone RP23-201O19, com... 42 0.79
6dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.79
7emb|AL935276.16| Zebrafish DNA sequence from clone CH211-273J2, ... 42 0.79
8emb|BX511140.4| Zebrafish DNA sequence from clone DKEY-264G21 in... 42 0.79
9gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 42 0.79
10gb|AC110269.8| Mus musculus chromosome 1, clone RP23-322P13, com... 40 3.1
11gb|AC021105.13| Homo sapiens BAC clone RP11-163O17 from 4, compl... 40 3.1
12emb|BX927177.12| Zebrafish DNA sequence from clone DKEY-78D16 in... 40 3.1
13gb|M10594.1|SOYNOD35G Soybean nodulin-35 (N-35) gene encoding a ... 40 3.1
14dbj|AB002809.1| Glycine max mRNA for nodulin 35, complete cds 40 3.1

>gb|AC163498.3| Mus musculus chromosome 1, clone RP23-86J11, complete sequence
          Length = 192061

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 38    ttcccaaatacagtctgggatt 59
             ||||||||||||||||||||||
Sbjct: 79433 ttcccaaatacagtctgggatt 79454



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>gb|AC025116.14| Mus musculus chromosome 1, clone RP23-124O19, complete sequence
          Length = 233298

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 38    ttcccaaatacagtctgggatt 59
             ||||||||||||||||||||||
Sbjct: 53201 ttcccaaatacagtctgggatt 53180



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>gb|AC146522.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0039A07 map near 50283S, complete sequence
          Length = 158158

 Score = 42.1 bits (21), Expect = 0.79
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 137   acatgaataacagaacaagag 157
             |||||||||||||||||||||
Sbjct: 28623 acatgaataacagaacaagag 28643



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>emb|BX936312.12| Zebrafish DNA sequence from clone DKEY-204O5 in linkage group 7, complete
              sequence
          Length = 158510

 Score = 42.1 bits (21), Expect = 0.79
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 119    acattcagcaaacgaccaacatgaa 143
              ||||||||||||| |||||||||||
Sbjct: 105223 acattcagcaaactaccaacatgaa 105199



 Score = 42.1 bits (21), Expect = 0.79
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 119    acattcagcaaacgaccaacatgaa 143
              ||||||||||||| |||||||||||
Sbjct: 104779 acattcagcaaactaccaacatgaa 104755



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>gb|AC102561.4| Mus musculus chromosome 7, clone RP23-201O19, complete sequence
          Length = 195549

 Score = 42.1 bits (21), Expect = 0.79
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 19     aggcaatagtacaaatacttt 39
              |||||||||||||||||||||
Sbjct: 125157 aggcaatagtacaaatacttt 125177



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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 42.1 bits (21), Expect = 0.79
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 137      acatgaataacagaacaagag 157
                |||||||||||||||||||||
Sbjct: 14283011 acatgaataacagaacaagag 14283031



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>emb|AL935276.16| Zebrafish DNA sequence from clone CH211-273J2, complete sequence
          Length = 164481

 Score = 42.1 bits (21), Expect = 0.79
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 119   acattcagcaaacgaccaacatgaa 143
             ||||||||||||| |||||||||||
Sbjct: 49711 acattcagcaaactaccaacatgaa 49687



 Score = 42.1 bits (21), Expect = 0.79
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 119   acattcagcaaacgaccaacatgaa 143
             ||||||||||||| |||||||||||
Sbjct: 49271 acattcagcaaactaccaacatgaa 49247



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>emb|BX511140.4| Zebrafish DNA sequence from clone DKEY-264G21 in linkage group 20,
             complete sequence
          Length = 166153

 Score = 42.1 bits (21), Expect = 0.79
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 142   aataacagaacaagagtaaat 162
             |||||||||||||||||||||
Sbjct: 90984 aataacagaacaagagtaaat 90964



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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 42.1 bits (21), Expect = 0.79
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 137      acatgaataacagaacaagag 157
                |||||||||||||||||||||
Sbjct: 14365013 acatgaataacagaacaagag 14365033



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>gb|AC110269.8| Mus musculus chromosome 1, clone RP23-322P13, complete sequence
          Length = 251855

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 5      tttcattcaaacagaggcaa 24
              ||||||||||||||||||||
Sbjct: 100346 tttcattcaaacagaggcaa 100365



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>gb|AC021105.13| Homo sapiens BAC clone RP11-163O17 from 4, complete sequence
          Length = 187360

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 132   gaccaacatgaataacagaa 151
             ||||||||||||||||||||
Sbjct: 69584 gaccaacatgaataacagaa 69565



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>emb|BX927177.12| Zebrafish DNA sequence from clone DKEY-78D16 in linkage group 19,
             complete sequence
          Length = 154891

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 20    ggcaatagtacaaatacttt 39
             ||||||||||||||||||||
Sbjct: 94106 ggcaatagtacaaatacttt 94125



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>gb|M10594.1|SOYNOD35G Soybean nodulin-35 (N-35) gene encoding a subunit of uricase II,
            complete cds
          Length = 4783

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 14   aacagaggcaatagtacaaa 33
            ||||||||||||||||||||
Sbjct: 2445 aacagaggcaatagtacaaa 2464



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>dbj|AB002809.1| Glycine max mRNA for nodulin 35, complete cds
          Length = 1220

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 14  aacagaggcaatagtacaaa 33
           ||||||||||||||||||||
Sbjct: 448 aacagaggcaatagtacaaa 467


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,033,943
Number of Sequences: 3902068
Number of extensions: 3033943
Number of successful extensions: 35553
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 35519
Number of HSP's gapped (non-prelim): 34
length of query: 242
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 220
effective length of database: 17,147,199,772
effective search space: 3772383949840
effective search space used: 3772383949840
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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