>TILS_BUCBP (Q89AX3) tRNA(Ile)-lysidine synthase (EC 6.3.4.-)|
           (tRNA(Ile)-lysidine synthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase)
          Length = 438

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +2

Query: 29  RLTVISQNNLRFSFRLLQC*HDIL*PTEYSKTTVHCYKLCKN 154
           +L  + +NNL F+FR +   H +   +E  K + HC K+C N
Sbjct: 30  QLLKLKKNNLNFTFRAIHINHQLHPDSE--KWSDHCKKICIN 69

>CCNB3_MOUSE (Q810T2) G2/mitotic-specific cyclin-B3|
          Length = 1396

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -3

Query: 153  FLHNL*QCTVVLEYSVGYNISCQHCRSRKLN 61
            ++ NL  C   LEY  GY ++  H   RKLN
Sbjct: 1319 YMRNLSNCVPTLEYFTGYKMAELHILVRKLN 1349

>RFC1_DROME (P35600) Activator 1 140 kDa subunit (Replication factor C large|
           subunit) (Germline transcription factor 1)
          Length = 986

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 16/32 (50%), Positives = 20/32 (62%)
 Frame = -2

Query: 277 LVSRRRRPNSCWSLGMNKAFFSLLLSNGMFLC 182
           LV +R R NS WSL   +AFFS +L  G  +C
Sbjct: 747 LVEKRIRANSAWSLLPTQAFFSSVLP-GEHMC 777

>Y081_NPVOP (O10334) Hypothetical 24.9 kDa protein (ORF84)|
          Length = 218

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 17/55 (30%), Positives = 24/55 (43%)
 Frame = -2

Query: 250 SCWSLGMNKAFFSLLLSNGMFLCLLQCYYFFSVLTQFVTMYCGFGVFCRLQYIVS 86
           +C S+   +  F  LL   + L LL     FS L   V +     +FC   YI+S
Sbjct: 147 NCESILCRRVSFQTLLLGSVILLLLFNVENFSALNLLVILLILLALFCHNNYIIS 201

>CT098_HUMAN (Q9GZP1) Protein C20orf98|
          Length = 204

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -2

Query: 307 LSEERKKPWILVSRRRRPNSCWSLGMNKAFFSLLL 203
           LS++ + P +L  RR  P+ CW + ++     LLL
Sbjct: 41  LSDDPEGPPVLCPRRPWPSLCWKISLSSGTLLLLL 75

>YKG6_CAEEL (P46556) Hypothetical protein B0285.6 in chromosome III|
          Length = 577

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -1

Query: 239 PGNEQGFFFSSSVKWDVFVSPPMLLFLFSSYTI 141
           P  + G  + S   W  F  PPM+ ++FSS+ I
Sbjct: 246 PNEDHGISYLS---WMAFAIPPMIFYMFSSWFI 275

>FOG1_XENLA (Q9I9K0) Zinc finger protein FOG (Friend of GATA) (xFOG) (Fragment)|
          Length = 1061

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +2

Query: 182 TQKHPI*QKKRKKSLVHSQAPARVRPPSP 268
           TQ  P  +K+RK   +H  AP    PPSP
Sbjct: 674 TQPTPRTRKRRKLYEIHGVAPTESTPPSP 702

>RBL2_MAGMG (Q8RTI2) Ribulose bisphosphate carboxylase (EC 4.1.1.39) (RuBisCO)|
          Length = 459

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 18/56 (32%), Positives = 24/56 (42%)
 Frame = -1

Query: 275 GLSATAA*LLLEPGNEQGFFFSSSVKWDVFVSPPMLLFLFSSYTICNNVLWFWSIL 108
           G +  A+ L L  GN QG     + K + F  PP  L LF       N+   W +L
Sbjct: 97  GKAMIASFLTLTVGNNQGMSDVENAKMEDFYVPPEFLKLFDGPAC--NISHMWKVL 150

>NAD2_CAEEL (P32739) Sodium-dependent high-affinity dicarboxylate transporter 2|
           (Na(+)/dicarboxylate cotransporter 2) (NaDC-2) (ceNaDC2)
          Length = 551

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -1

Query: 203 VKWDVFVSPPMLLFLFSSYTI 141
           ++W VF  PPM ++L +SY I
Sbjct: 241 LQWMVFAIPPMFVYLLASYII 261

>SWF1_KLULA (Q6CJC5) Palmitoyltransferase SWF1 (EC 2.3.1.-)|
          Length = 324

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = -2

Query: 253 NSCWSLGMNKAFFSLLLSNGMFLCLLQCYYFFSVLTQF 140
           N+C   G  + F+S LLSN    CLL  Y    +LT F
Sbjct: 161 NNCVGYGNYEYFYSFLLSN----CLLLTYASLRLLTLF 194

>YR542_MIMIV (Q5UQA7) Putative F-box/LRR-repeat protein R542|
          Length = 558

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 5   LNHQNREMRLTVISQNNLRFSFRLLQC 85
           +N + RE  LT+++QN   FSF L  C
Sbjct: 28  INKEVREFILTMLNQNPKSFSFNLKNC 54

>SBE2_YEAST (P42223) Protein SBE2|
          Length = 864

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
 Frame = +1

Query: 154 LKRNNNIGGDTKTSHLTEEEKKKPCSFP------GSSKS*AAVAERPKSMASSFPQTIIN 315
           LK+N      TK   L+E  ++K CS P      GSS S +      K++ +  P + ++
Sbjct: 27  LKQNQPKKFSTKELMLSEYTERKSCSLPLSKSRSGSSASSSTTGSNGKNIGTRRPSSNLD 86

Query: 316 THVTSQ 333
            +  SQ
Sbjct: 87  FNFASQ 92


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,035,534
Number of Sequences: 219361
Number of extensions: 924000
Number of successful extensions: 2748
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2748
length of database: 80,573,946
effective HSP length: 87
effective length of database: 61,489,539
effective search space used: 1475748936
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)