ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl22c05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|M95746.1|WHTSTPCDN Wheat (clone p80k-16) initiation factor is... 309 3e-81
2gb|M95747.1|WHTIF4F82B Wheat (clone p80k-34) initiation factor i... 303 2e-79
3emb|AL606594.4| Oryza sativa genomic DNA, chromosome 4, BAC clon... 100 6e-18
4dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 100 6e-18
5dbj|AK065553.1| Oryza sativa (japonica cultivar-group) cDNA clon... 100 6e-18
6dbj|AK060761.1| Oryza sativa (japonica cultivar-group) cDNA clon... 100 6e-18
7emb|AL442115.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 100 6e-18
8gb|AC151915.8| Medicago truncatula clone mth2-30n12, complete se... 46 0.072
9gb|AC151743.27| Medicago truncatula clone mth2-25e15, complete s... 46 0.072
10emb|CR847826.13| Zebrafish DNA sequence from clone CH211-204D2 i... 44 0.28
11emb|Z69724.1|HSU85B5 Human DNA sequence from clone LL0XNC01-85B5... 44 0.28
12emb|BX927394.14| Zebrafish DNA sequence from clone CH211-262I10 ... 42 1.1
13emb|AL157361.6| Human DNA sequence from clone RP11-132L12 on chr... 42 1.1
14gb|AC026415.4| Homo sapiens chromosome 5 clone CTD-2046I8, compl... 42 1.1
15gb|AC022127.4|AC022127 Homo sapiens chromosome 5 clone CTD-2151N... 42 1.1
16emb|AM156957.1| Oryza sativa (indica cultivar-group) mRNA for pu... 42 1.1
17gb|BT016928.1| Zea mays clone E04912703C02.c mRNA sequence 40 4.4
18ref|XM_590799.2| PREDICTED: Bos taurus similar to X-prolyl amino... 40 4.4
19ref|XM_866017.1| PREDICTED: Bos taurus similar to X-prolyl amino... 40 4.4
20ref|XM_877463.1| PREDICTED: Bos taurus similar to X-prolyl amino... 40 4.4
21ref|XM_877410.1| PREDICTED: Bos taurus similar to X-prolyl amino... 40 4.4
22ref|XM_877368.1| PREDICTED: Bos taurus similar to X-prolyl amino... 40 4.4
23ref|XM_877320.1| PREDICTED: Bos taurus similar to X-prolyl amino... 40 4.4
24gb|AC140845.2| Mus musculus BAC clone RP24-386C13 from chromosom... 40 4.4
25gb|AC161931.6| Mus musculus chromosome 3, clone RP23-290N20, com... 40 4.4
26gb|AC123554.3| Mus musculus BAC clone RP23-135A9 from chromosome... 40 4.4
27gb|AC131080.13| Mus musculus chromosome 16, clone RP23-438H16, c... 40 4.4
28gb|AC124740.4| Mus musculus BAC clone RP23-356M1 from chromosome... 40 4.4
29gb|AC128952.4| Rattus norvegicus 14 BAC CH230-510F9 (Children's ... 40 4.4
30emb|AL450312.10| Human DNA sequence from clone RP11-138L24 on ch... 40 4.4
31emb|AL354701.7| Human DNA sequence from clone RP11-785H23 on chr... 40 4.4
32emb|AL121759.25|HSDJ872K7 Human DNA sequence from clone RP5-872K... 40 4.4
33gb|AC099101.7| Rattus norvegicus 14 BAC CH230-186B23 (Children's... 40 4.4
34emb|AL589738.6| Mouse DNA sequence from clone RP23-322J11 on chr... 40 4.4
35emb|AJ400899.1|PSA400899 Pisum sativum partial kdsA gene for Kdo... 40 4.4
36emb|CR855858.5| Zebrafish DNA sequence from clone CH211-113H5 in... 40 4.4
37emb|BX901883.5| Zebrafish DNA sequence from clone DKEY-151M15 in... 40 4.4
38emb|BX927134.11| Zebrafish DNA sequence from clone CH211-261C20 ... 40 4.4
39gb|AC092066.4| Homo sapiens chromosome 19 clone CTB-171A8, compl... 40 4.4
40gb|AC108104.2| Homo sapiens chromosome 5 clone RP11-198P15, comp... 40 4.4
41gb|AC008158.16| Homo sapiens chromosome 17, clone RP11-42F20, co... 40 4.4
42dbj|AK038355.1| Mus musculus 16 days neonate thymus cDNA, RIKEN ... 40 4.4
43gb|AC084664.1|CBRG47C14 Caenorhabditis briggsae cosmid G47C14, c... 40 4.4
44gb|AC084472.1|AC084472 Caenorhabditis briggsae cosmid CB048M21, ... 40 4.4
45dbj|AP006628.1| Onion yellows phytoplasma OY-M DNA, complete genome 40 4.4
46emb|AL773512.6| Mouse DNA sequence from clone RP23-454N6 on chro... 40 4.4
47emb|AL935194.4| Zebrafish DNA sequence from clone CH211-237E12, ... 40 4.4
48gb|AC000358.1|HSAC000358 Human cosmid g1572c237, complete sequence 40 4.4
49emb|BX248390.7| Zebrafish DNA sequence from clone DKEY-34F16 in ... 40 4.4
50emb|CR751546.4| Zebrafish DNA sequence from clone CH211-53M6 in ... 40 4.4
51emb|BX640497.11| Zebrafish DNA sequence from clone CH211-108O9 i... 40 4.4
52emb|BX470128.8| Zebrafish DNA sequence from clone DKEY-19F21 in ... 40 4.4
53gb|AY110434.1| Zea mays CL533_2 mRNA sequence 40 4.4
54emb|AM156959.1| Oryza glaberrima mRNA for putative eukaryotic tr... 40 4.4
55gb|AC145869.2| Pan troglodytes BAC clone RP43-39F14 from chromos... 40 4.4
56emb|AL161752.4|CNS01RHH Human chromosome 14 DNA sequence BAC R-9... 40 4.4
57gb|AC153487.1| Taeniopygia guttata clone TG__Ba0319A15, complete... 40 4.4
58emb|AL954703.8| Zebrafish DNA sequence from clone CH211-51I10 in... 40 4.4
59gb|AC117544.8| Mus musculus chromosome 8, clone RP23-99L5, compl... 40 4.4
60gb|AF479646.1| Homo sapiens carcinoembryonic antigen like-2 prot... 40 4.4 
>gb|M95746.1|WHTSTPCDN Wheat (clone p80k-16) initiation factor isozyme 4F p82 subunit mRNA
            sequence
          Length = 2863

 Score =  309 bits (156), Expect = 3e-81
 Identities = 159/160 (99%)
 Strand = Plus / Minus

                                                                        
Query: 43   aagccaaaataatcttagattcagttttcgactcctacaatgctgacacgatatattgta 102
            |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2863 aagccaaaatgatcttagattcagttttcgactcctacaatgctgacacgatatattgta 2804

                                                                        
Query: 103  accgacagaatactccaaaaccacagtacattgttacaaattgtgtaagaactgaaaaga 162
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2803 accgacagaatactccaaaaccacagtacattgttacaaattgtgtaagaactgaaaaga 2744

                                                    
Query: 163  aataataacattggaggagacacaaaaacatcccatttga 202
            ||||||||||||||||||||||||||||||||||||||||
Sbjct: 2743 aataataacattggaggagacacaaaaacatcccatttga 2704



 Score =  151 bits (76), Expect = 2e-33
 Identities = 109/116 (93%), Gaps = 3/116 (2%)
 Strand = Plus / Minus

                                                                        
Query: 222  gccttgttcattcccaggctccagcaagagttaggccgccgtcgcc-gagagaccaaaat 280
            |||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct: 2693 gccttgttcattcccaggctccagcaagagttaggccgccgtcgccagagagacc-aaat 2635

                                                                    
Query: 281  ccatggcttcttcctttcctc-agacaataatcaacactcatgtaacctcgcaaaa 335
            |||||||||||| || ||||| | |||||||||||||||||||| |||||||||||
Sbjct: 2634 ccatggcttctttctgtcctcgaaacaataatcaacactcatgtgacctcgcaaaa 2579
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>gb|M95747.1|WHTIF4F82B Wheat (clone p80k-34) initiation factor isozyme 4F p82 subunit mRNA,
            complete cds
          Length = 2887

 Score =  303 bits (153), Expect = 2e-79
 Identities = 153/153 (100%)
 Strand = Plus / Minus

                                                                        
Query: 48   aaaataatcttagattcagttttcgactcctacaatgctgacacgatatattgtaaccga 107
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2862 aaaataatcttagattcagttttcgactcctacaatgctgacacgatatattgtaaccga 2803

                                                                        
Query: 108  cagaatactccaaaaccacagtacattgttacaaattgtgtaagaactgaaaagaaataa 167
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2802 cagaatactccaaaaccacagtacattgttacaaattgtgtaagaactgaaaagaaataa 2743

                                             
Query: 168  taacattggaggagacacaaaaacatcccattt 200
            |||||||||||||||||||||||||||||||||
Sbjct: 2742 taacattggaggagacacaaaaacatcccattt 2710



 Score =  188 bits (95), Expect = 8e-45
 Identities = 111/115 (96%), Gaps = 1/115 (0%)
 Strand = Plus / Minus

                                                                        
Query: 222  gccttgttcattcccaggctccagcaagagttaggccgccgtcgccgagagaccaaaatc 281
            ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 2696 gccttgttcattcccaggctccagcgagagttaggccgccgtcgccgagagaccaaaatc 2637

                                                                   
Query: 282  catggcttcttcctttcctc-agacaataatcaacactcatgtaacctcgcaaaa 335
            |||||||||||||||||||| | |||||||||||||||||||| |||||||||||
Sbjct: 2636 catggcttcttcctttcctcgaaacaataatcaacactcatgtgacctcgcaaaa 2582
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>emb|AL606594.4| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0029H02,
             complete sequence
          Length = 173171

 Score = 99.6 bits (50), Expect = 6e-18
 Identities = 78/86 (90%), Gaps = 1/86 (1%)
 Strand = Plus / Plus

                                                                         
Query: 86    tgacacgatatattgtaa-ccgacagaatactccaaaaccacagtacattgttacaaatt 144
             |||||||||||||||||| || ||||||||||||||||||| |||||||||||||||| |
Sbjct: 42105 tgacacgatatattgtaaaccaacagaatactccaaaaccatagtacattgttacaaaat 42164

                                       
Query: 145   gtgtaagaactgaaaagaaataataa 170
             ||||| | || |||||||| ||||||
Sbjct: 42165 gtgtacgcacagaaaagaactaataa 42190



 Score = 44.1 bits (22), Expect = 0.28
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 275   caaaatccatggcttcttcctttcct 300
             |||||||||||||||||| |||||||
Sbjct: 42261 caaaatccatggcttctttctttcct 42286
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 99.6 bits (50), Expect = 6e-18
 Identities = 78/86 (90%), Gaps = 1/86 (1%)
 Strand = Plus / Plus

                                                                            
Query: 86       tgacacgatatattgtaa-ccgacagaatactccaaaaccacagtacattgttacaaatt 144
                |||||||||||||||||| || ||||||||||||||||||| |||||||||||||||| |
Sbjct: 24921520 tgacacgatatattgtaaaccaacagaatactccaaaaccatagtacattgttacaaaat 24921579

                                          
Query: 145      gtgtaagaactgaaaagaaataataa 170
                ||||| | || |||||||| ||||||
Sbjct: 24921580 gtgtacgcacagaaaagaactaataa 24921605



 Score = 44.1 bits (22), Expect = 0.28
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                          
Query: 275      caaaatccatggcttcttcctttcct 300
                |||||||||||||||||| |||||||
Sbjct: 24921676 caaaatccatggcttctttctttcct 24921701
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>dbj|AK065553.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013027N14, full
            insert sequence
          Length = 2907

 Score = 99.6 bits (50), Expect = 6e-18
 Identities = 78/86 (90%), Gaps = 1/86 (1%)
 Strand = Plus / Minus

                                                                        
Query: 86   tgacacgatatattgtaa-ccgacagaatactccaaaaccacagtacattgttacaaatt 144
            |||||||||||||||||| || ||||||||||||||||||| |||||||||||||||| |
Sbjct: 2795 tgacacgatatattgtaaaccaacagaatactccaaaaccatagtacattgttacaaaat 2736

                                      
Query: 145  gtgtaagaactgaaaagaaataataa 170
            ||||| | || |||||||| ||||||
Sbjct: 2735 gtgtacgcacagaaaagaactaataa 2710



 Score = 44.1 bits (22), Expect = 0.28
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 275  caaaatccatggcttcttcctttcct 300
            |||||||||||||||||| |||||||
Sbjct: 2639 caaaatccatggcttctttctttcct 2614
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>dbj|AK060761.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-033-A02, full
            insert sequence
          Length = 1712

 Score = 99.6 bits (50), Expect = 6e-18
 Identities = 78/86 (90%), Gaps = 1/86 (1%)
 Strand = Plus / Minus

                                                                        
Query: 86   tgacacgatatattgtaa-ccgacagaatactccaaaaccacagtacattgttacaaatt 144
            |||||||||||||||||| || ||||||||||||||||||| |||||||||||||||| |
Sbjct: 1701 tgacacgatatattgtaaaccaacagaatactccaaaaccatagtacattgttacaaaat 1642

                                      
Query: 145  gtgtaagaactgaaaagaaataataa 170
            ||||| | || |||||||| ||||||
Sbjct: 1641 gtgtacgcacagaaaagaactaataa 1616



 Score = 44.1 bits (22), Expect = 0.28
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 275  caaaatccatggcttcttcctttcct 300
            |||||||||||||||||| |||||||
Sbjct: 1545 caaaatccatggcttctttctttcct 1520
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>emb|AL442115.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0711G06, complete
             sequence
          Length = 148644

 Score = 99.6 bits (50), Expect = 6e-18
 Identities = 78/86 (90%), Gaps = 1/86 (1%)
 Strand = Plus / Plus

                                                                         
Query: 86    tgacacgatatattgtaa-ccgacagaatactccaaaaccacagtacattgttacaaatt 144
             |||||||||||||||||| || ||||||||||||||||||| |||||||||||||||| |
Sbjct: 49634 tgacacgatatattgtaaaccaacagaatactccaaaaccatagtacattgttacaaaat 49693

                                       
Query: 145   gtgtaagaactgaaaagaaataataa 170
             ||||| | || |||||||| ||||||
Sbjct: 49694 gtgtacgcacagaaaagaactaataa 49719



 Score = 44.1 bits (22), Expect = 0.28
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 275   caaaatccatggcttcttcctttcct 300
             |||||||||||||||||| |||||||
Sbjct: 49790 caaaatccatggcttctttctttcct 49815
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>gb|AC151915.8| Medicago truncatula clone mth2-30n12, complete sequence
          Length = 92346

 Score = 46.1 bits (23), Expect = 0.072
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 185   caaaaacatcccatttgacagaagaag 211
             |||||||||||||||||| ||||||||
Sbjct: 45816 caaaaacatcccatttgagagaagaag 45842
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>gb|AC151743.27| Medicago truncatula clone mth2-25e15, complete sequence
          Length = 105045

 Score = 46.1 bits (23), Expect = 0.072
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 185   caaaaacatcccatttgacagaagaag 211
             |||||||||||||||||| ||||||||
Sbjct: 28363 caaaaacatcccatttgagagaagaag 28337
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>emb|CR847826.13| Zebrafish DNA sequence from clone CH211-204D2 in linkage group 8,
             complete sequence
          Length = 150519

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 49    aaataatcttagattcagtttt 70
             ||||||||||||||||||||||
Sbjct: 27178 aaataatcttagattcagtttt 27199
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>emb|Z69724.1|HSU85B5 Human DNA sequence from clone LL0XNC01-85B5 on chromosome X, complete
            sequence
          Length = 39550

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 149  aagaactgaaaagaaataataacatt 174
            |||| |||||||||||||||||||||
Sbjct: 3229 aagagctgaaaagaaataataacatt 3204
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>emb|BX927394.14| Zebrafish DNA sequence from clone CH211-262I10 in linkage group 21,
              complete sequence
          Length = 164899

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 77     ctacaatgctgacacgatatattgt 101
              |||||||||||| ||||||||||||
Sbjct: 122731 ctacaatgctgaaacgatatattgt 122707
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>emb|AL157361.6| Human DNA sequence from clone RP11-132L12 on chromosome 13q21.33-22.3
             Contains a signal sequence receptor, alpha
             (translocon-associated protein alpha) (SSR1) pseudogene,
             complete sequence
          Length = 151603

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 233   tcccaggctccagcaagagtt 253
             |||||||||||||||||||||
Sbjct: 87107 tcccaggctccagcaagagtt 87087
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>gb|AC026415.4| Homo sapiens chromosome 5 clone CTD-2046I8, complete sequence
          Length = 67124

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 233  tcccaggctccagcaagagtt 253
            |||||||||||||||||||||
Sbjct: 3598 tcccaggctccagcaagagtt 3618
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>gb|AC022127.4|AC022127 Homo sapiens chromosome 5 clone CTD-2151N11, complete sequence
          Length = 83029

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 233   tcccaggctccagcaagagtt 253
             |||||||||||||||||||||
Sbjct: 34025 tcccaggctccagcaagagtt 34005
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>emb|AM156957.1| Oryza sativa (indica cultivar-group) mRNA for putative eukaryotic
            translation initiation factor 4 gamma (eif(iso)4g gene),
            cultivar IR64
          Length = 2599

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 276  aaaatccatggcttcttcctttcct 300
            ||||||||||||||||| |||||||
Sbjct: 2599 aaaatccatggcttctttctttcct 2575
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>gb|BT016928.1| Zea mays clone E04912703C02.c mRNA sequence
          Length = 249

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 276 aaaatccatggcttcttcctttcc 299
           ||||||||||||||||| ||||||
Sbjct: 74  aaaatccatggcttctttctttcc 97
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>ref|XM_590799.2| PREDICTED: Bos taurus similar to X-prolyl aminopeptidase
            (aminopeptidase P) 1, soluble, transcript variant 1
            (LOC513156), mRNA
          Length = 2051

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 285  ggcttcttcctttcctcaga 304
            ||||||||||||||||||||
Sbjct: 1989 ggcttcttcctttcctcaga 1970
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>ref|XM_866017.1| PREDICTED: Bos taurus similar to X-prolyl aminopeptidase
            (aminopeptidase P) 1, soluble, transcript variant 3
            (LOC513156), mRNA
          Length = 2089

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 285  ggcttcttcctttcctcaga 304
            ||||||||||||||||||||
Sbjct: 2027 ggcttcttcctttcctcaga 2008
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>ref|XM_877463.1| PREDICTED: Bos taurus similar to X-prolyl aminopeptidase
            (aminopeptidase P) 1, soluble, transcript variant 8
            (LOC513156), mRNA
          Length = 2102

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 285  ggcttcttcctttcctcaga 304
            ||||||||||||||||||||
Sbjct: 2040 ggcttcttcctttcctcaga 2021
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>ref|XM_877410.1| PREDICTED: Bos taurus similar to X-prolyl aminopeptidase
            (aminopeptidase P) 1, soluble, transcript variant 7
            (LOC513156), mRNA
          Length = 2012

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 285  ggcttcttcctttcctcaga 304
            ||||||||||||||||||||
Sbjct: 1950 ggcttcttcctttcctcaga 1931
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>ref|XM_877368.1| PREDICTED: Bos taurus similar to X-prolyl aminopeptidase
            (aminopeptidase P) 1, soluble, transcript variant 6
            (LOC513156), mRNA
          Length = 1897

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 285  ggcttcttcctttcctcaga 304
            ||||||||||||||||||||
Sbjct: 1835 ggcttcttcctttcctcaga 1816
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>ref|XM_877320.1| PREDICTED: Bos taurus similar to X-prolyl aminopeptidase
            (aminopeptidase P) 1, soluble, transcript variant 5
            (LOC513156), mRNA
          Length = 1966

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 285  ggcttcttcctttcctcaga 304
            ||||||||||||||||||||
Sbjct: 1904 ggcttcttcctttcctcaga 1885
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>gb|AC140845.2| Mus musculus BAC clone RP24-386C13 from chromosome 8, complete sequence
          Length = 153426

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 156   gaaaagaaataataacattg 175
             ||||||||||||||||||||
Sbjct: 39323 gaaaagaaataataacattg 39342
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>gb|AC161931.6| Mus musculus chromosome 3, clone RP23-290N20, complete sequence
          Length = 186062

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 140    aaattgtgtaagaactgaaa 159
              ||||||||||||||||||||
Sbjct: 107485 aaattgtgtaagaactgaaa 107504
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>gb|AC123554.3| Mus musculus BAC clone RP23-135A9 from chromosome 13, complete sequence
          Length = 205869

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 281   ccatggcttcttcctttcct 300
             ||||||||||||||||||||
Sbjct: 31484 ccatggcttcttcctttcct 31503
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>gb|AC131080.13| Mus musculus chromosome 16, clone RP23-438H16, complete sequence
          Length = 192584

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                              
Query: 136    ttacaaattgtgtaagaactgaaaagaaataa 167
              |||||||| || ||||||||||||| ||||||
Sbjct: 132634 ttacaaatagtttaagaactgaaaataaataa 132665
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>gb|AC124740.4| Mus musculus BAC clone RP23-356M1 from chromosome 18, complete sequence
          Length = 190023

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 234   cccaggctccagcaagagtt 253
             ||||||||||||||||||||
Sbjct: 97827 cccaggctccagcaagagtt 97808
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>gb|AC128952.4| Rattus norvegicus 14 BAC CH230-510F9 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 170859

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 155   tgaaaagaaataataacatt 174
             ||||||||||||||||||||
Sbjct: 30825 tgaaaagaaataataacatt 30844
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>emb|AL450312.10| Human DNA sequence from clone RP11-138L24 on chromosome 9, complete
           sequence
          Length = 164559

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 143 ttgtgtaagaactgaaaagaaata 166
           |||||||||||||||||| |||||
Sbjct: 55  ttgtgtaagaactgaaaaaaaata 32
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>emb|AL354701.7| Human DNA sequence from clone RP11-785H23 on chromosome 9 Contains the 3'
              end of a novel gene, and a novel pseudogene, complete
              sequence
          Length = 131366

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 143    ttgtgtaagaactgaaaagaaata 166
              |||||||||||||||||| |||||
Sbjct: 129421 ttgtgtaagaactgaaaaaaaata 129398
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>emb|AL121759.25|HSDJ872K7 Human DNA sequence from clone RP5-872K7 on chromosome 20 Contains two
              novel genes, the 5' end of the C20orf19 gene for
              hypothalamus protein HT013, the RPL24P2 gene for ribosomal
              protein L24 pseudogene 2, the RPS15AP1 gene for ribosomal
              protein S15a pseudogene 1 and three CpG islands, complete
              sequence
          Length = 157972

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 193    tcccatttgacagaagaaga 212
              ||||||||||||||||||||
Sbjct: 108393 tcccatttgacagaagaaga 108374
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>gb|AC099101.7| Rattus norvegicus 14 BAC CH230-186B23 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 211584

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 155   tgaaaagaaataataacatt 174
             ||||||||||||||||||||
Sbjct: 41625 tgaaaagaaataataacatt 41606
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>emb|AL589738.6| Mouse DNA sequence from clone RP23-322J11 on chromosome 13 Contains the
             Foxq1 gene for forkhead box Q1 (Hfh1l), two novel genes
             and two CpG islands, complete sequence
          Length = 187709

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 228   ttcattcccaggctccagca 247
             ||||||||||||||||||||
Sbjct: 35935 ttcattcccaggctccagca 35916
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>emb|AJ400899.1|PSA400899 Pisum sativum partial kdsA gene for Kdo-8-phosphate synthase, exons
           1-4
          Length = 1812

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 148 taagaactgaaaagaaataa 167
           ||||||||||||||||||||
Sbjct: 639 taagaactgaaaagaaataa 620
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>emb|CR855858.5| Zebrafish DNA sequence from clone CH211-113H5 in linkage group 24,
             complete sequence
          Length = 152666

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 82    atgctgacacgatatattgt 101
             ||||||||||||||||||||
Sbjct: 54458 atgctgacacgatatattgt 54439
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>emb|BX901883.5| Zebrafish DNA sequence from clone DKEY-151M15 in linkage group 3,
              complete sequence
          Length = 241961

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 82     atgctgacacgatatattgt 101
              ||||||||||||||||||||
Sbjct: 198757 atgctgacacgatatattgt 198776
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>emb|BX927134.11| Zebrafish DNA sequence from clone CH211-261C20 in linkage group 20,
             complete sequence
          Length = 86384

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 155   tgaaaagaaataataacatt 174
             ||||||||||||||||||||
Sbjct: 84744 tgaaaagaaataataacatt 84763
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>gb|AC092066.4| Homo sapiens chromosome 19 clone CTB-171A8, complete sequence
          Length = 137411

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 194   cccatttgacagaagaagag 213
             ||||||||||||||||||||
Sbjct: 39979 cccatttgacagaagaagag 39960
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>gb|AC108104.2| Homo sapiens chromosome 5 clone RP11-198P15, complete sequence
          Length = 96678

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 138   acaaattgtgtaagaactga 157
             ||||||||||||||||||||
Sbjct: 56401 acaaattgtgtaagaactga 56382
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>gb|AC008158.16| Homo sapiens chromosome 17, clone RP11-42F20, complete sequence
          Length = 148110

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 225   ttgttcattcccaggctcca 244
             ||||||||||||||||||||
Sbjct: 70836 ttgttcattcccaggctcca 70817
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>dbj|AK038355.1| Mus musculus 16 days neonate thymus cDNA, RIKEN full-length
           enriched library, clone:A130097D18
           product:unclassifiable, full insert sequence
          Length = 719

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 234 cccaggctccagcaagagtt 253
           ||||||||||||||||||||
Sbjct: 28  cccaggctccagcaagagtt 9
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>gb|AC084664.1|CBRG47C14 Caenorhabditis briggsae cosmid G47C14, complete sequence
          Length = 41476

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 145  gtgtaagaactgaaaagaaa 164
            ||||||||||||||||||||
Sbjct: 5836 gtgtaagaactgaaaagaaa 5855
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>gb|AC084472.1|AC084472 Caenorhabditis briggsae cosmid CB048M21, complete sequence
          Length = 62355

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 43    aagccaaaataatcttagat 62
             ||||||||||||||||||||
Sbjct: 14713 aagccaaaataatcttagat 14732
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>dbj|AP006628.1| Onion yellows phytoplasma OY-M DNA, complete genome
          Length = 860631

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 148    taagaactgaaaagaaataataac 171
              |||||||| |||||||||||||||
Sbjct: 183747 taagaacttaaaagaaataataac 183724
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>emb|AL773512.6| Mouse DNA sequence from clone RP23-454N6 on chromosome 2, complete
             sequence
          Length = 159731

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 156   gaaaagaaataataacattg 175
             ||||||||||||||||||||
Sbjct: 65829 gaaaagaaataataacattg 65810
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>emb|AL935194.4| Zebrafish DNA sequence from clone CH211-237E12, complete sequence
          Length = 145569

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 82    atgctgacacgatatattgt 101
             ||||||||||||||||||||
Sbjct: 50947 atgctgacacgatatattgt 50928
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>gb|AC000358.1|HSAC000358 Human cosmid g1572c237, complete sequence
          Length = 41947

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 193   tcccatttgacagaagaaga 212
             ||||||||||||||||||||
Sbjct: 24232 tcccatttgacagaagaaga 24213
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>emb|BX248390.7| Zebrafish DNA sequence from clone DKEY-34F16 in linkage group 20,
             complete sequence
          Length = 239874

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 82    atgctgacacgatatattgt 101
             ||||||||||||||||||||
Sbjct: 46843 atgctgacacgatatattgt 46824
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>emb|CR751546.4| Zebrafish DNA sequence from clone CH211-53M6 in linkage group 20,
           complete sequence
          Length = 9831

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 155 tgaaaagaaataataacatt 174
           ||||||||||||||||||||
Sbjct: 360 tgaaaagaaataataacatt 379
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>emb|BX640497.11| Zebrafish DNA sequence from clone CH211-108O9 in linkage group 20,
             complete sequence
          Length = 189717

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 82    atgctgacacgatatattgt 101
             ||||||||||||||||||||
Sbjct: 78894 atgctgacacgatatattgt 78875
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>emb|BX470128.8| Zebrafish DNA sequence from clone DKEY-19F21 in linkage group 20,
             complete sequence
          Length = 209360

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 82    atgctgacacgatatattgt 101
             ||||||||||||||||||||
Sbjct: 38990 atgctgacacgatatattgt 38971
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>gb|AY110434.1| Zea mays CL533_2 mRNA sequence
          Length = 843

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 276 aaaatccatggcttcttcctttcc 299
           ||||||||||||||||| ||||||
Sbjct: 672 aaaatccatggcttctttctttcc 649
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>emb|AM156959.1| Oryza glaberrima mRNA for putative eukaryotic translation initiation
            factor 4 gamma (eif(iso)4g gene), cultivar Tog5681
          Length = 2699

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 277  aaatccatggcttcttcctttcct 300
            |||||||||||||||| |||||||
Sbjct: 2699 aaatccatggcttctttctttcct 2676
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>gb|AC145869.2| Pan troglodytes BAC clone RP43-39F14 from chromosome 7, complete
             sequence
          Length = 201977

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 193   tcccatttgacagaagaaga 212
             ||||||||||||||||||||
Sbjct: 57056 tcccatttgacagaagaaga 57037
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>emb|AL161752.4|CNS01RHH Human chromosome 14 DNA sequence BAC R-99L13 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 178433

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 168   taacattggaggagacacaaaaac 191
             ||||||||||||||||||| ||||
Sbjct: 93093 taacattggaggagacacataaac 93116
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>gb|AC153487.1| Taeniopygia guttata clone TG__Ba0319A15, complete sequence
          Length = 136080

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 232   ttcccaggctccagcaagag 251
             ||||||||||||||||||||
Sbjct: 42008 ttcccaggctccagcaagag 41989
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>emb|AL954703.8| Zebrafish DNA sequence from clone CH211-51I10 in linkage group 1,
              complete sequence
          Length = 184073

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 82     atgctgacacgatatattgt 101
              ||||||||||||||||||||
Sbjct: 135077 atgctgacacgatatattgt 135096
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>gb|AC117544.8| Mus musculus chromosome 8, clone RP23-99L5, complete sequence
          Length = 179585

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 156  gaaaagaaataataacattg 175
            ||||||||||||||||||||
Sbjct: 7379 gaaaagaaataataacattg 7360
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>gb|AF479646.1| Homo sapiens carcinoembryonic antigen like-2 protein (CEAL2) gene,
            complete cds
          Length = 19950

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 194  cccatttgacagaagaagag 213
            ||||||||||||||||||||
Sbjct: 8446 cccatttgacagaagaagag 8427


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,928,755
Number of Sequences: 3902068
Number of extensions: 3928755
Number of successful extensions: 91708
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 91547
Number of HSP's gapped (non-prelim): 153
length of query: 335
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 313
effective length of database: 17,147,199,772
effective search space: 5367073528636
effective search space used: 5367073528636
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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