ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl22b11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Y9128_RHOBA (Q7UM18) UPF0314 protein RB9128 30 2.2
2PIP25_ARATH (Q9SV31) Probable aquaporin PIP2.5 (Plasma membrane ... 29 2.9
3GATB_STRMU (Q8DSG6) Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransfe... 29 3.7

>Y9128_RHOBA (Q7UM18) UPF0314 protein RB9128|
          Length = 201

 Score = 29.6 bits (65), Expect = 2.2
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 83  RKFWCPCHSFIPKFICIWQKHS 18
           R+FWC C S++P    IW  H+
Sbjct: 44  RRFWCECGSWVPWSWDIWTAHN 65



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>PIP25_ARATH (Q9SV31) Probable aquaporin PIP2.5 (Plasma membrane intrinsic|
           protein 2d) (PIP2d)
          Length = 286

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -1

Query: 216 QDPPPQSSQPLAD*KKIPALSFFRLLISRLQSLFFSLYIEFL 91
           QDPPP+   PL D  ++   SF+R LI+   +    LY+  +
Sbjct: 18  QDPPPE---PLFDATELGKWSFYRALIAEFIATLLFLYVTIM 56



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>GATB_STRMU (Q8DSG6) Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B|
           (EC 6.3.5.-) (Asp/Glu-ADT subunit B)
          Length = 479

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = -3

Query: 88  GQESFGARVILSFLNSFVFGRSTPCYQKK 2
           GQE+FG +  L  LNSF F R    Y++K
Sbjct: 203 GQEAFGVKTELKNLNSFNFVRRGLAYEEK 231


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,972,818
Number of Sequences: 219361
Number of extensions: 478236
Number of successful extensions: 1306
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1259
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1306
length of database: 80,573,946
effective HSP length: 52
effective length of database: 69,167,174
effective search space used: 1660012176
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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