Clone Name | rbastl22b11 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | Y9128_RHOBA (Q7UM18) UPF0314 protein RB9128 | 30 | 2.2 | 2 | PIP25_ARATH (Q9SV31) Probable aquaporin PIP2.5 (Plasma membrane ... | 29 | 2.9 | 3 | GATB_STRMU (Q8DSG6) Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransfe... | 29 | 3.7 |
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>Y9128_RHOBA (Q7UM18) UPF0314 protein RB9128| Length = 201 Score = 29.6 bits (65), Expect = 2.2 Identities = 10/22 (45%), Positives = 14/22 (63%) Frame = -2 Query: 83 RKFWCPCHSFIPKFICIWQKHS 18 R+FWC C S++P IW H+ Sbjct: 44 RRFWCECGSWVPWSWDIWTAHN 65
>PIP25_ARATH (Q9SV31) Probable aquaporin PIP2.5 (Plasma membrane intrinsic| protein 2d) (PIP2d) Length = 286 Score = 29.3 bits (64), Expect = 2.9 Identities = 15/42 (35%), Positives = 23/42 (54%) Frame = -1 Query: 216 QDPPPQSSQPLAD*KKIPALSFFRLLISRLQSLFFSLYIEFL 91 QDPPP+ PL D ++ SF+R LI+ + LY+ + Sbjct: 18 QDPPPE---PLFDATELGKWSFYRALIAEFIATLLFLYVTIM 56
>GATB_STRMU (Q8DSG6) Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B| (EC 6.3.5.-) (Asp/Glu-ADT subunit B) Length = 479 Score = 28.9 bits (63), Expect = 3.7 Identities = 14/29 (48%), Positives = 18/29 (62%) Frame = -3 Query: 88 GQESFGARVILSFLNSFVFGRSTPCYQKK 2 GQE+FG + L LNSF F R Y++K Sbjct: 203 GQEAFGVKTELKNLNSFNFVRRGLAYEEK 231 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 31,972,818 Number of Sequences: 219361 Number of extensions: 478236 Number of successful extensions: 1306 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 1259 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1306 length of database: 80,573,946 effective HSP length: 52 effective length of database: 69,167,174 effective search space used: 1660012176 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)