>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  103 bits (52), Expect = 2e-19
 Identities = 133/159 (83%), Gaps = 2/159 (1%)
 Strand = Plus / Minus

                                                                            
Query: 4        tcttctgataacagggagtgcttctgccaaatacaaatgaatttaggaatgaaagaatga 63
                ||||||||||||| |||||||||||| || ||||||| ||||| |||||| |||||||| 
Sbjct: 10412372 tcttctgataacaaggagtgcttctggcagatacaaaagaattcaggaatcaaagaatgg 10412313

                                                                            
Query: 64       cacgggcaccaaaactttctt--gccctctaagaactctatatacagactgaaaaataga 121
                || | ||||||||| | || |   ||| |||| | |  ||||||||||| ||||||||||
Sbjct: 10412312 catgagcaccaaaattctcctaacccccctaaaagccttatatacagaccgaaaaataga 10412253

                                                       
Query: 122      ctctggagtctacttattaatagtctgaagaaactaaga 160
                || ||||||||||||||| ||  ||||||| ||||||||
Sbjct: 10412252 ctatggagtctacttattgatgatctgaagtaactaaga 10412214



 Score = 50.1 bits (25), Expect = 0.003
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                         
Query: 176      cagtctgcaagaggctgactactct 200
                |||||||||||||||||||||||||
Sbjct: 10412201 cagtctgcaagaggctgactactct 10412177

>gb|AC137931.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0039F10, complete sequence
          Length = 139714

 Score =  103 bits (52), Expect = 2e-19
 Identities = 133/159 (83%), Gaps = 2/159 (1%)
 Strand = Plus / Minus

                                                                         
Query: 4     tcttctgataacagggagtgcttctgccaaatacaaatgaatttaggaatgaaagaatga 63
             ||||||||||||| |||||||||||| || ||||||| ||||| |||||| |||||||| 
Sbjct: 68925 tcttctgataacaaggagtgcttctggcagatacaaaagaattcaggaatcaaagaatgg 68866

                                                                         
Query: 64    cacgggcaccaaaactttctt--gccctctaagaactctatatacagactgaaaaataga 121
             || | ||||||||| | || |   ||| |||| | |  ||||||||||| ||||||||||
Sbjct: 68865 catgagcaccaaaattctcctaacccccctaaaagccttatatacagaccgaaaaataga 68806

                                                    
Query: 122   ctctggagtctacttattaatagtctgaagaaactaaga 160
             || ||||||||||||||| ||  ||||||| ||||||||
Sbjct: 68805 ctatggagtctacttattgatgatctgaagtaactaaga 68767



 Score = 50.1 bits (25), Expect = 0.003
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                      
Query: 176   cagtctgcaagaggctgactactct 200
             |||||||||||||||||||||||||
Sbjct: 68754 cagtctgcaagaggctgactactct 68730

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  103 bits (52), Expect = 2e-19
 Identities = 133/159 (83%), Gaps = 2/159 (1%)
 Strand = Plus / Minus

                                                                            
Query: 4        tcttctgataacagggagtgcttctgccaaatacaaatgaatttaggaatgaaagaatga 63
                ||||||||||||| |||||||||||| || ||||||| ||||| |||||| |||||||| 
Sbjct: 10410473 tcttctgataacaaggagtgcttctggcagatacaaaagaattcaggaatcaaagaatgg 10410414

                                                                            
Query: 64       cacgggcaccaaaactttctt--gccctctaagaactctatatacagactgaaaaataga 121
                || | ||||||||| | || |   ||| |||| | |  ||||||||||| ||||||||||
Sbjct: 10410413 catgagcaccaaaattctcctaacccccctaaaagccttatatacagaccgaaaaataga 10410354

                                                       
Query: 122      ctctggagtctacttattaatagtctgaagaaactaaga 160
                || ||||||||||||||| ||  ||||||| ||||||||
Sbjct: 10410353 ctatggagtctacttattgatgatctgaagtaactaaga 10410315



 Score = 50.1 bits (25), Expect = 0.003
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                         
Query: 176      cagtctgcaagaggctgactactct 200
                |||||||||||||||||||||||||
Sbjct: 10410302 cagtctgcaagaggctgactactct 10410278

>dbj|AK107121.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-124-B05, full
            insert sequence
          Length = 1650

 Score =  103 bits (52), Expect = 2e-19
 Identities = 133/159 (83%), Gaps = 2/159 (1%)
 Strand = Plus / Minus

                                                                        
Query: 4    tcttctgataacagggagtgcttctgccaaatacaaatgaatttaggaatgaaagaatga 63
            ||||||||||||| |||||||||||| || ||||||| ||||| |||||| |||||||| 
Sbjct: 1585 tcttctgataacaaggagtgcttctggcagatacaaaagaattcaggaatcaaagaatgg 1526

                                                                        
Query: 64   cacgggcaccaaaactttctt--gccctctaagaactctatatacagactgaaaaataga 121
            || | ||||||||| | || |   ||| |||| | |  ||||||||||| ||||||||||
Sbjct: 1525 catgagcaccaaaattctcctaacccccctaaaagccttatatacagaccgaaaaataga 1466

                                                   
Query: 122  ctctggagtctacttattaatagtctgaagaaactaaga 160
            || ||||||||||||||| ||  ||||||| ||||||||
Sbjct: 1465 ctatggagtctacttattgatgatctgaagtaactaaga 1427



 Score = 50.1 bits (25), Expect = 0.003
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                     
Query: 176  cagtctgcaagaggctgactactct 200
            |||||||||||||||||||||||||
Sbjct: 1414 cagtctgcaagaggctgactactct 1390

>gb|AC118670.2| Genomic sequence for Oryza sativa, Nipponbare stain, clone OSJNBb0036D03,
              from chromosome 3, complete sequence
          Length = 125800

 Score = 73.8 bits (37), Expect = 2e-10
 Identities = 55/61 (90%)
 Strand = Plus / Minus

                                                                          
Query: 100    tatatacagactgaaaaatagactctggagtctacttattaatagtctgaagaaactaag 159
              ||||||||||| |||||||||||| ||||||||||||||| ||  ||||||| |||||||
Sbjct: 125740 tatatacagaccgaaaaatagactatggagtctacttattgatgatctgaagtaactaag 125681

               
Query: 160    a 160
              |
Sbjct: 125680 a 125680



 Score = 50.1 bits (25), Expect = 0.003
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                       
Query: 176    cagtctgcaagaggctgactactct 200
              |||||||||||||||||||||||||
Sbjct: 125667 cagtctgcaagaggctgactactct 125643

>gb|AC083964.3| Homo sapiens chromosome 8, clone RP11-91J19, complete sequence
          Length = 161160

 Score = 46.1 bits (23), Expect = 0.048
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 95     aactctatatacagactgaaaaa 117
              |||||||||||||||||||||||
Sbjct: 155387 aactctatatacagactgaaaaa 155409

>emb|CR774192.15| Zebrafish DNA sequence from clone DKEY-191M6 in linkage group 12,
             complete sequence
          Length = 146133

 Score = 46.1 bits (23), Expect = 0.048
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 15    cagggagtgcttctgccaaatacaaat 41
             |||| ||||||||||||||||||||||
Sbjct: 73572 caggaagtgcttctgccaaatacaaat 73598

>gb|AC090135.13| Homo sapiens chromosome 8, clone RP11-18D5, complete sequence
          Length = 103709

 Score = 46.1 bits (23), Expect = 0.048
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 95    aactctatatacagactgaaaaa 117
             |||||||||||||||||||||||
Sbjct: 25345 aactctatatacagactgaaaaa 25323

>gb|AC104774.4| Homo sapiens BAC clone RP11-5N22 from 2, complete sequence
          Length = 113862

 Score = 42.1 bits (21), Expect = 0.75
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 36    acaaatgaatttaggaatgaa 56
             |||||||||||||||||||||
Sbjct: 53216 acaaatgaatttaggaatgaa 53236

>gb|AC150432.2| Branchiostoma floridae clone CH302-9D15, complete sequence
          Length = 173785

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 95     aactctatatacagactgaa 114
              ||||||||||||||||||||
Sbjct: 112238 aactctatatacagactgaa 112219

>gb|AC161287.2| Pan troglodytes BAC clone CH251-267A11 from chromosome 7, complete
              sequence
          Length = 166684

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 70     caccaaaactttcttgccct 89
              ||||||||||||||||||||
Sbjct: 144423 caccaaaactttcttgccct 144404

>emb|CT009723.4| Mouse DNA sequence from clone RP23-12L5 on chromosome 9, complete
             sequence
          Length = 210030

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 113   aaaaatagactctggagtctactt 136
             |||||| |||||||||||||||||
Sbjct: 33094 aaaaattgactctggagtctactt 33071

>gb|AC129317.3| Mus musculus BAC clone RP23-443L14 from chromosome 9, complete sequence
          Length = 210950

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 113    aaaaatagactctggagtctactt 136
              |||||| |||||||||||||||||
Sbjct: 199654 aaaaattgactctggagtctactt 199677

>gb|AC002456.2| Homo sapiens BAC clone CTB-13L3 from 7, complete sequence
          Length = 156399

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 70    caccaaaactttcttgccct 89
             ||||||||||||||||||||
Sbjct: 56291 caccaaaactttcttgccct 56272

>emb|AL513489.7| Human DNA sequence from clone RP11-179D21 on chromosome X, complete
             sequence
          Length = 22695

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 148   gaagaaactaagagctggga 167
             ||||||||||||||||||||
Sbjct: 20220 gaagaaactaagagctggga 20239

>gb|AC165428.1| Strongylocentrotus purpuratus BAC clone contig containing Eve, the hox
              cluster, cholinesterase, and COLP5alpha genes, complete
              sequence
          Length = 796348

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 24     cttctgccaaatacaaatga 43
              ||||||||||||||||||||
Sbjct: 297488 cttctgccaaatacaaatga 297469

>gb|AC106029.8| Homo sapiens chromosome 15, clone CTD-2538I11, complete sequence
          Length = 180591

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 36     acaaatgaatttaggaatga 55
              ||||||||||||||||||||
Sbjct: 143624 acaaatgaatttaggaatga 143605

>gb|AC026495.13| Homo sapiens chromosome 15, clone RP11-509A17, complete sequence
          Length = 188605

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 36     acaaatgaatttaggaatga 55
              ||||||||||||||||||||
Sbjct: 138484 acaaatgaatttaggaatga 138465

>gb|AC124220.20| Pan troglodytes clone rp43-70b2, complete sequence
          Length = 178815

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 36     acaaatgaatttaggaatga 55
              ||||||||||||||||||||
Sbjct: 152752 acaaatgaatttaggaatga 152771

>gb|AC100721.2| Homo sapiens chromosome 15, clone CTD-3177I6, complete sequence
          Length = 64373

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 36    acaaatgaatttaggaatga 55
             ||||||||||||||||||||
Sbjct: 16772 acaaatgaatttaggaatga 16791

>gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete genome
          Length = 6260361

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 135    ttattaatagtctgaagaaa 154
              ||||||||||||||||||||
Sbjct: 766718 ttattaatagtctgaagaaa 766737

>gb|AC122870.4| Mus musculus BAC clone RP23-103D17 from 3, complete sequence
          Length = 181063

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 116    aatagactctggagtctacttattaata 143
              ||||| |||||||||| |||||||||||
Sbjct: 116693 aatagtctctggagtccacttattaata 116720

>gb|AC174070.1| Homo sapiens chromosome 15 clone WI2-635I4, complete sequence
          Length = 38013

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 36    acaaatgaatttaggaatga 55
             ||||||||||||||||||||
Sbjct: 12922 acaaatgaatttaggaatga 12941

>emb|CT030710.7| Mouse DNA sequence from clone RP23-386A10 on chromosome 9, complete
              sequence
          Length = 206562

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 61     tgacacgggcaccaaaactt 80
              ||||||||||||||||||||
Sbjct: 129977 tgacacgggcaccaaaactt 129996


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,186,833
Number of Sequences: 3902068
Number of extensions: 2186833
Number of successful extensions: 41535
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 41450
Number of HSP's gapped (non-prelim): 85
length of query: 231
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 209
effective length of database: 17,147,199,772
effective search space: 3583764752348
effective search space used: 3583764752348
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)