Clone Name | rbastl22b07 |
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Clone Library Name | barley_pub |
>gb|L37358.1|BLYLOXC Hordeum vulgare lipoxygenase 2 (LoxC) mRNA, complete cds Length = 2910 Score = 250 bits (126), Expect = 2e-63 Identities = 142/147 (96%), Gaps = 4/147 (2%) Strand = Plus / Minus Query: 4 ttcattattgggcaaaacaagggattttttctgcacacgacgatgcattgaccggtagcc 63 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2896 ttcattattgggcaaaacaagggattttttctgcacacgacgatgcattgaccggtagcc 2837 Query: 64 agctgagctgagcttccgcatgccgatcagacccgtcgggcacgcaccc----ttattgc 119 |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| Sbjct: 2836 agctgagctgagcttccgcatgccgatcagacccgtcgtgcacgcacccttatttattgc 2777 Query: 120 cttaattattcatgcaccggcacaact 146 ||||||||||||||||||||||||||| Sbjct: 2776 cttaattattcatgcaccggcacaact 2750 Score = 113 bits (57), Expect = 3e-22 Identities = 72/77 (93%) Strand = Plus / Minus Query: 169 agctagctccggggtaagcaagcaaggatagcacaaaagcatgaggtctcgacaacggac 228 |||||||||||| |||||||||||||||||||||||| |||||||||||| || |||||| Sbjct: 2727 agctagctccggtgtaagcaagcaaggatagcacaaaggcatgaggtctccacgacggac 2668 Query: 229 gtgctcaaatcagatgg 245 ||||||| ||||||||| Sbjct: 2667 gtgctcagatcagatgg 2651
>gb|BT009097.1| Triticum aestivum clone wkm2c.pk005.n2:fis, full insert mRNA sequence Length = 1129 Score = 52.0 bits (26), Expect = 8e-04 Identities = 41/46 (89%) Strand = Plus / Minus Query: 1 gacttcattattgggcaaaacaagggattttttctgcacacgacga 46 ||||| ||||||||||||| |||||| |||||||| ||||||||| Sbjct: 1095 gactttattattgggcaaatgaagggaatttttctgtacacgacga 1050 Score = 44.1 bits (22), Expect = 0.20 Identities = 41/46 (89%), Gaps = 1/46 (2%) Strand = Plus / Minus Query: 79 ccgcatgccgatcagacccgtcgggcacgcac-ccttattgcctta 123 ||||||||||||| ||||||||| |||| ||| | ||||||||||| Sbjct: 1045 ccgcatgccgatcggacccgtcgtgcacacacgcattattgcctta 1000
>gb|AC137004.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0615D12, complete sequence Length = 155402 Score = 46.1 bits (23), Expect = 0.051 Identities = 23/23 (100%) Strand = Plus / Plus Query: 111 ccttattgccttaattattcatg 133 ||||||||||||||||||||||| Sbjct: 136193 ccttattgccttaattattcatg 136215 Score = 46.1 bits (23), Expect = 0.051 Identities = 23/23 (100%) Strand = Plus / Plus Query: 111 ccttattgccttaattattcatg 133 ||||||||||||||||||||||| Sbjct: 94214 ccttattgccttaattattcatg 94236
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 46.1 bits (23), Expect = 0.051 Identities = 23/23 (100%) Strand = Plus / Plus Query: 111 ccttattgccttaattattcatg 133 ||||||||||||||||||||||| Sbjct: 21745017 ccttattgccttaattattcatg 21745039 Score = 46.1 bits (23), Expect = 0.051 Identities = 23/23 (100%) Strand = Plus / Plus Query: 111 ccttattgccttaattattcatg 133 ||||||||||||||||||||||| Sbjct: 21703038 ccttattgccttaattattcatg 21703060
>emb|Z82288.2|CEZK896 Caenorhabditis elegans Cosmid ZK896, complete sequence Length = 37711 Score = 42.1 bits (21), Expect = 0.80 Identities = 21/21 (100%) Strand = Plus / Plus Query: 18 aaacaagggattttttctgca 38 ||||||||||||||||||||| Sbjct: 32565 aaacaagggattttttctgca 32585
>emb|BX294385.17| Zebrafish DNA sequence from clone CH211-197E8 in linkage group 24, complete sequence Length = 155584 Score = 42.1 bits (21), Expect = 0.80 Identities = 21/21 (100%) Strand = Plus / Minus Query: 15 gcaaaacaagggattttttct 35 ||||||||||||||||||||| Sbjct: 39634 gcaaaacaagggattttttct 39614 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,509,303 Number of Sequences: 3902068 Number of extensions: 1509303 Number of successful extensions: 26205 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 6 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 26184 Number of HSP's gapped (non-prelim): 20 length of query: 245 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 223 effective length of database: 17,147,199,772 effective search space: 3823825549156 effective search space used: 3823825549156 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)