ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl22b07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|L37358.1|BLYLOXC Hordeum vulgare lipoxygenase 2 (LoxC) mRNA, ... 250 2e-63
2gb|BT009097.1| Triticum aestivum clone wkm2c.pk005.n2:fis, full ... 52 8e-04
3gb|AC137004.2| Oryza sativa (japonica cultivar-group) chromosome... 46 0.051
4dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.051
5emb|Z82288.2|CEZK896 Caenorhabditis elegans Cosmid ZK896, comple... 42 0.80
6emb|BX294385.17| Zebrafish DNA sequence from clone CH211-197E8 i... 42 0.80

>gb|L37358.1|BLYLOXC Hordeum vulgare lipoxygenase 2 (LoxC) mRNA, complete cds
          Length = 2910

 Score =  250 bits (126), Expect = 2e-63
 Identities = 142/147 (96%), Gaps = 4/147 (2%)
 Strand = Plus / Minus

                                                                        
Query: 4    ttcattattgggcaaaacaagggattttttctgcacacgacgatgcattgaccggtagcc 63
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2896 ttcattattgggcaaaacaagggattttttctgcacacgacgatgcattgaccggtagcc 2837

                                                                        
Query: 64   agctgagctgagcttccgcatgccgatcagacccgtcgggcacgcaccc----ttattgc 119
            |||||||||||||||||||||||||||||||||||||| ||||||||||    |||||||
Sbjct: 2836 agctgagctgagcttccgcatgccgatcagacccgtcgtgcacgcacccttatttattgc 2777

                                       
Query: 120  cttaattattcatgcaccggcacaact 146
            |||||||||||||||||||||||||||
Sbjct: 2776 cttaattattcatgcaccggcacaact 2750



 Score =  113 bits (57), Expect = 3e-22
 Identities = 72/77 (93%)
 Strand = Plus / Minus

                                                                        
Query: 169  agctagctccggggtaagcaagcaaggatagcacaaaagcatgaggtctcgacaacggac 228
            |||||||||||| |||||||||||||||||||||||| |||||||||||| || ||||||
Sbjct: 2727 agctagctccggtgtaagcaagcaaggatagcacaaaggcatgaggtctccacgacggac 2668

                             
Query: 229  gtgctcaaatcagatgg 245
            ||||||| |||||||||
Sbjct: 2667 gtgctcagatcagatgg 2651



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>gb|BT009097.1| Triticum aestivum clone wkm2c.pk005.n2:fis, full insert mRNA sequence
          Length = 1129

 Score = 52.0 bits (26), Expect = 8e-04
 Identities = 41/46 (89%)
 Strand = Plus / Minus

                                                          
Query: 1    gacttcattattgggcaaaacaagggattttttctgcacacgacga 46
            ||||| |||||||||||||  |||||| |||||||| |||||||||
Sbjct: 1095 gactttattattgggcaaatgaagggaatttttctgtacacgacga 1050



 Score = 44.1 bits (22), Expect = 0.20
 Identities = 41/46 (89%), Gaps = 1/46 (2%)
 Strand = Plus / Minus

                                                          
Query: 79   ccgcatgccgatcagacccgtcgggcacgcac-ccttattgcctta 123
            ||||||||||||| ||||||||| |||| ||| | |||||||||||
Sbjct: 1045 ccgcatgccgatcggacccgtcgtgcacacacgcattattgcctta 1000



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>gb|AC137004.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0615D12,
              complete sequence
          Length = 155402

 Score = 46.1 bits (23), Expect = 0.051
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 111    ccttattgccttaattattcatg 133
              |||||||||||||||||||||||
Sbjct: 136193 ccttattgccttaattattcatg 136215



 Score = 46.1 bits (23), Expect = 0.051
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 111   ccttattgccttaattattcatg 133
             |||||||||||||||||||||||
Sbjct: 94214 ccttattgccttaattattcatg 94236



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 46.1 bits (23), Expect = 0.051
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                       
Query: 111      ccttattgccttaattattcatg 133
                |||||||||||||||||||||||
Sbjct: 21745017 ccttattgccttaattattcatg 21745039



 Score = 46.1 bits (23), Expect = 0.051
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                       
Query: 111      ccttattgccttaattattcatg 133
                |||||||||||||||||||||||
Sbjct: 21703038 ccttattgccttaattattcatg 21703060



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>emb|Z82288.2|CEZK896 Caenorhabditis elegans Cosmid ZK896, complete sequence
          Length = 37711

 Score = 42.1 bits (21), Expect = 0.80
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 18    aaacaagggattttttctgca 38
             |||||||||||||||||||||
Sbjct: 32565 aaacaagggattttttctgca 32585



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>emb|BX294385.17| Zebrafish DNA sequence from clone CH211-197E8 in linkage group 24,
             complete sequence
          Length = 155584

 Score = 42.1 bits (21), Expect = 0.80
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 15    gcaaaacaagggattttttct 35
             |||||||||||||||||||||
Sbjct: 39634 gcaaaacaagggattttttct 39614


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,509,303
Number of Sequences: 3902068
Number of extensions: 1509303
Number of successful extensions: 26205
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 26184
Number of HSP's gapped (non-prelim): 20
length of query: 245
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 223
effective length of database: 17,147,199,772
effective search space: 3823825549156
effective search space used: 3823825549156
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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