>FAS1_YARLI (P34229) Fatty acid synthase beta subunit (EC 2.3.1.86) [Includes:|
            3-hydroxypalmitoyl-[acyl-carrier-protein] dehydratase (EC
            4.2.1.61); Enoyl-[acyl-carrier-protein] reductase [NADH]
            (EC 1.3.1.9); [Acyl-carrier-protein] acetyltransferase
            (EC 2.
          Length = 2086

 Score = 31.6 bits (70), Expect = 0.48
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
 Frame = +1

Query: 154  LVRILLPSAI---LFQLLHLSNEVPHDPGADSASIGDPIPASPSV 279
            +++ + P AI   + +L+HLSN     PGAD   +GD + A+  +
Sbjct: 1360 IIKAIFPRAIDADILRLVHLSNGFKMMPGADPLQMGDVVSATAKI 1404

>TOXC_COCCA (Q92215) Putative fatty acid synthase subunit TOXC [Includes:|
            3-hydroxypalmitoyl-[acyl-carrier-protein] dehydratase (EC
            4.2.1.61); Enoyl-[acyl-carrier-protein] reductase [NADH]
            (EC 1.3.1.9); [Acyl-carrier-protein] acetyltransferase
            (EC 2.3.1.3
          Length = 2080

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +1

Query: 184  LFQLLHLSNEVPHDPGADSASIGDPI 261
            L QL+HLSNE    PGA+   IG+ +
Sbjct: 1360 LLQLVHLSNEFRMTPGAEPLKIGEEV 1385

>CL011_HUMAN (Q9NVM9) Protein C12orf11 (Sarcoma antigen NY-SAR-95)|
          Length = 706

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -2

Query: 308 PQQGHVELHLTDGEAGIGSPMEAESAPGSCGTSF 207
           P+  ++ELH   G   I SP++  S P SC T+F
Sbjct: 321 PRTNNIELHYCTGAYRI-SPVDVNSRPSSCLTNF 353

>GLYA4_COLP3 (Q47WY2) Serine hydroxymethyltransferase 4 (EC 2.1.2.1) (Serine|
           methylase 4) (SHMT 4)
          Length = 417

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = -2

Query: 377 RLANFED*LWRGSTQQDRRWKQNPQQGHVEL 285
           ++A F+D +W+   Q+D+R     QQ HVEL
Sbjct: 7   QIAGFDDSIWQAMEQEDKR-----QQDHVEL 32

>GLYA2_COLP3 (Q481S6) Serine hydroxymethyltransferase 2 (EC 2.1.2.1) (Serine|
           methylase 2) (SHMT 2)
          Length = 417

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = -2

Query: 377 RLANFED*LWRGSTQQDRRWKQNPQQGHVEL 285
           ++A F+D +W+   Q+D+R     QQ HVEL
Sbjct: 7   QIAGFDDSIWQAMEQEDKR-----QQDHVEL 32

>CAC1A_HUMAN (O00555) Voltage-dependent P/Q-type calcium channel alpha-1A subunit|
            (Voltage-gated calcium channel alpha subunit Cav2.1)
            (Calcium channel, L type, alpha-1 polypeptide isoform 4)
            (Brain calcium channel I) (BI)
          Length = 2505

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -2

Query: 332  QDRRWKQNPQQGHVELHLTDGEAGI-GSPMEAESAPGSCGTSFDR 201
            +D+RW ++P +G   +    G + + GSP     AP + GTS  R
Sbjct: 2242 RDQRWSRSPSEGREHMAHRQGSSSVSGSP-----APSTSGTSTPR 2281

>GPMI_BACLD (Q65EN1) 2,3-bisphosphoglycerate-independent phosphoglycerate|
           mutase (EC 5.4.2.1) (Phosphoglyceromutase)
           (BPG-independent PGAM) (iPGM)
          Length = 511

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -1

Query: 255 IADGSRIRTRVMWNFI*QMEKLE*DRRWKQNPHQ 154
           I DG  +R   + N + Q +K   DR W + PHQ
Sbjct: 10  ILDGFGLRDETVGNAVAQAKKPNFDRYWNKYPHQ 43



 Score = 27.3 bits (59), Expect = 9.1
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
 Frame = -3

Query: 328 IADGSRIHNRVMWNFI*QMEKLE*DRRWKQNPHQ----GHVELHLTDGEAG 188
           I DG  + +  + N + Q +K   DR W + PHQ        + L DG+ G
Sbjct: 10  ILDGFGLRDETVGNAVAQAKKPNFDRYWNKYPHQTLTASGEAVGLPDGQMG 60

>CL011_MOUSE (Q8QZV7) Protein C12orf11 homolog|
          Length = 732

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -2

Query: 308 PQQGHVELHLTDGEAGIGSPMEAESAPGSCGTSF 207
           P+   +ELH   G   I SP++  S P SC T+F
Sbjct: 321 PRTNSIELHYCTGAYRI-SPVDVNSRPSSCLTNF 353

>E2AK3_RAT (Q9Z1Z1) Eukaryotic translation initiation factor 2-alpha kinase 3|
           precursor (EC 2.7.11.1) (PRKR-like endoplasmic reticulum
           kinase) (Pancreatic eIF2-alpha kinase)
          Length = 1108

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 17/56 (30%), Positives = 22/56 (39%), Gaps = 7/56 (12%)
 Frame = -2

Query: 329 DRRWKQNPQQGHVELHLTD-------GEAGIGSPMEAESAPGSCGTSFDRWRSWNR 183
           D  W      G+V  +LTD       G  G G   EA++    C  +  R R  NR
Sbjct: 566 DNSWNDIKHSGYVSRYLTDFEPIQCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPNR 621

>LEPA_GEOKA (Q5KWZ3) GTP-binding protein lepA|
          Length = 609

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +2

Query: 260 FQLLHLSNEVPHDPVVDSASIGDPAELSLSIINPRNWRGGD 382
           F++  +    P   VVD  ++GD   L+ SI N ++ R GD
Sbjct: 241 FEVTEVGVFTPKQKVVDELTVGDVGYLTASIKNVKDTRVGD 281

>E2AK3_MOUSE (Q9Z2B5) Eukaryotic translation initiation factor 2-alpha kinase 3|
           precursor (EC 2.7.11.1) (PRKR-like endoplasmic reticulum
           kinase) (Pancreatic eIF2-alpha kinase)
          Length = 1114

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 17/56 (30%), Positives = 22/56 (39%), Gaps = 7/56 (12%)
 Frame = -2

Query: 329 DRRWKQNPQQGHVELHLTD-------GEAGIGSPMEAESAPGSCGTSFDRWRSWNR 183
           D  W      G+V  +LTD       G  G G   EA++    C  +  R R  NR
Sbjct: 570 DNSWNDMKYSGYVSRYLTDFEPIQCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPNR 625

>TREF1_HUMAN (Q96PN7) Transcriptional-regulating factor 1|
           (Transcriptional-regulating protein 132) (Zinc finger
           transcription factor TReP-132) (Zinc finger protein
           rapa)
          Length = 1200

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -2

Query: 290 ELHLTDGEAGIGSPMEAESAPGSCGTSFD 204
           ++HL DG A  GSP  +    G+ G  FD
Sbjct: 479 QMHLPDGRAQPGSPESSGQPKGAFGEQFD 507

>PUR9_MYCPA (Q9RAJ5) Bifunctional purine biosynthesis protein purH [Includes:|
           Phosphoribosylaminoimidazolecarboxamide
           formyltransferase (EC 2.1.2.3) (AICAR transformylase);
           IMP cyclohydrolase (EC 3.5.4.10) (Inosinicase) (IMP
           synthetase) (ATIC)]
          Length = 527

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = -2

Query: 284 HLTDGEAGIGSPMEAESAPGSCGTSFDRW--RSWNRIA 177
           H  D +  + + ME+  AP    T+F +W  RSW R A
Sbjct: 188 HTADYDIAVATWMESTLAPEHPPTTFPKWLGRSWRRSA 225

>UVRC_UREPA (Q9PQA9) UvrABC system protein C (Protein uvrC) (Excinuclease ABC|
           subunit C)
          Length = 584

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 13/47 (27%), Positives = 26/47 (55%)
 Frame = +2

Query: 176 RRSYSSFSICQMKFHMTLVRILLPSAILFQLLHLSNEVPHDPVVDSA 316
           +R ++ F   Q KFH  ++++ L +AIL+   ++ N +     +D A
Sbjct: 315 QRFHTKFINAQTKFHKRILKLALDNAILYFESNIKNVINKQNELDDA 361

>PDE1A_MOUSE (Q61481) Calcium/calmodulin-dependent 3',5'-cyclic nucleotide|
           phosphodiesterase 1A (EC 3.1.4.17) (Cam-PDE 1A) (61 kDa
           Cam-PDE)
          Length = 565

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -2

Query: 335 QQDRRWKQNPQQGHVELHLTDGEAGIGSPMEAESAP 228
           Q   RWK+   QG ++LH    E G      A++ P
Sbjct: 530 QNKERWKELAAQGELDLHKNSEELGNTEEKHADTRP 565

>GPMI_BACSU (P39773) 2,3-bisphosphoglycerate-independent phosphoglycerate|
           mutase (EC 5.4.2.1) (Phosphoglyceromutase)
           (BPG-independent PGAM) (iPGM) (Vegetative protein 107)
           (VEG107)
          Length = 510

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -3

Query: 328 IADGSRIHNRVMWNFI*QMEKLE*DRRWKQNPHQ 227
           I DG  + N  + N +   +K   DR W Q PHQ
Sbjct: 9   ILDGFGLRNETVGNAVALAKKPNFDRYWNQYPHQ 42



 Score = 27.3 bits (59), Expect = 9.1
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -1

Query: 255 IADGSRIRTRVMWNFI*QMEKLE*DRRWKQNPHQ 154
           I DG  +R   + N +   +K   DR W Q PHQ
Sbjct: 9   ILDGFGLRNETVGNAVALAKKPNFDRYWNQYPHQ 42

>GPMI_BACHD (Q9K716) 2,3-bisphosphoglycerate-independent phosphoglycerate|
           mutase (EC 5.4.2.1) (Phosphoglyceromutase)
           (BPG-independent PGAM) (iPGM)
          Length = 510

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 19/51 (37%), Positives = 23/51 (45%)
 Frame = -3

Query: 328 IADGSRIHNRVMWNFI*QMEKLE*DRRWKQNPHQGHVELHLTDGEAGIGSP 176
           I DG  + +    N + Q  K   DR W Q PH     L   DGEA +G P
Sbjct: 10  ILDGFAMRDEAKGNAVAQANKPNFDRYWNQYPH----ALLKADGEA-VGLP 55

>YSM5_CAEEL (Q10125) Hypothetical protein F52C9.5 precursor|
          Length = 618

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
 Frame = -2

Query: 203 RWRSWNRIADGSRIRTRVIWNCNYV----HHVSFCMKEI 99
           +W SW+   DG + R ++  N N +      V  C+ EI
Sbjct: 479 KWESWSECQDGKQTRRKICANFNQIEDCAEEVRDCVDEI 517

>TIM21_DEBHA (Q6BVK1) Import inner membrane translocase subunit TIM21,|
           mitochondrial precursor
          Length = 277

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -3

Query: 250 RWKQNPHQGHVELHLTDGEAGIGSPMEAESAPGSYGTVTM 131
           +W +N     V     DG+  +    + ES  G YGTVT+
Sbjct: 177 KWARNRPAQSVRTRGADGKDYLFMKFQVESPSGKYGTVTL 216

>GPMI_THIDA (Q3SGA3) 2,3-bisphosphoglycerate-independent phosphoglycerate|
           mutase (EC 5.4.2.1) (Phosphoglyceromutase)
           (BPG-independent PGAM) (iPGM)
          Length = 513

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 18/59 (30%), Positives = 24/59 (40%)
 Frame = -3

Query: 328 IADGSRIHNRVMWNFI*QMEKLE*DRRWKQNPHQGHVELHLTDGEAGIGSPMEAESAPG 152
           I DG    +    N I Q  K   DR WK +P   H  +H ++ E G+       S  G
Sbjct: 10  ILDGFGCRDERANNAIAQANKPNWDRLWKHHP---HTLIHASESEVGLPKGQMGNSEVG 65

>MRS2_ASPFU (Q4WCV3) Inner membrane magnesium transporter mrs2, mitochondrial|
           precursor (RNA-splicing protein mrs2)
          Length = 597

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 16/29 (55%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +2

Query: 224 TLVRILL-PSAILFQLLHLSNEVPHDPVV 307
           TL  IL+ PSAIL  LLHL   + HD V+
Sbjct: 216 TLPHILVRPSAILINLLHLRVLIKHDRVL 244

>FAS1_YEAST (P07149) Fatty acid synthase beta subunit (EC 2.3.1.86) [Includes:|
            3-hydroxypalmitoyl-[acyl-carrier-protein] dehydratase (EC
            4.2.1.61); Enoyl-[acyl-carrier-protein] reductase [NADH]
            (EC 1.3.1.9); [Acyl-carrier-protein] acetyltransferase
            (EC 2.
          Length = 2051

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 12/46 (26%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
 Frame = +1

Query: 154  LVRILLPSAI---LFQLLHLSNEVPHDPGADSASIGDPIPASPSVK 282
            +++ + P+ +   L +L+HLSN     PGA    +GD +  +  ++
Sbjct: 1334 IIKAIFPNTVDGDLLKLVHLSNGYKMIPGAKPLQVGDVVSTTAVIE 1379


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,221,867
Number of Sequences: 219361
Number of extensions: 1375137
Number of successful extensions: 4036
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 3102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4015
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 1386249648
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)