ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl22b05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC125223.3| Mus musculus BAC clone RP23-31C10 from 13, comple... 44 0.33
2gb|AC104542.10| Mus musculus chromosome 1, clone RP23-165D11, co... 42 1.3
3gb|AY661558.1| Hordeum vulgare subsp. vulgare eIF4E gene locus, ... 42 1.3
4gb|AY817668.1| Homo sapiens arsenic (+3 oxidation state) methylt... 40 5.2
5gb|AC157211.7| Mus musculus chromosome 1, clone RP23-204C6, comp... 40 5.2
6gb|AC164646.3| Mus musculus BAC clone RP24-262I1 from chromosome... 40 5.2
7gb|AC118194.8| Mus musculus chromosome 3, clone RP23-464I9, comp... 40 5.2
8gb|AC161169.10| Mus musculus chromosome 5, clone RP24-102B13, co... 40 5.2
9emb|Z98255.2|HS279N11 Human DNA sequence from clone RP1-279N11 o... 40 5.2
10emb|AL358790.22| Human DNA sequence from clone RP11-753C18 on ch... 40 5.2
11gb|AC009144.5|AC009144 Homo sapiens chromosome 16 clone RP11-551... 40 5.2
12gb|AC102383.7| Mus musculus chromosome 1, clone RP24-312K8, comp... 40 5.2
13gb|AC007011.1|AC007011 Homo sapiens chromosome 16 clone 165E7, c... 40 5.2 
>gb|AC125223.3| Mus musculus BAC clone RP23-31C10 from 13, complete sequence
          Length = 221903

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 254   atcctattccagcttctccatc 275
             ||||||||||||||||||||||
Sbjct: 42307 atcctattccagcttctccatc 42328



 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 181   atcctattccagcttctccatc 202
             ||||||||||||||||||||||
Sbjct: 42307 atcctattccagcttctccatc 42328
to top
>gb|AC104542.10| Mus musculus chromosome 1, clone RP23-165D11, complete sequence
          Length = 211537

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 263    cagcttctccatctgtcaaat 283
              |||||||||||||||||||||
Sbjct: 206122 cagcttctccatctgtcaaat 206102



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 190    cagcttctccatctgtcaaat 210
              |||||||||||||||||||||
Sbjct: 206122 cagcttctccatctgtcaaat 206102
to top
>gb|AY661558.1| Hordeum vulgare subsp. vulgare eIF4E gene locus, complete sequence
          Length = 439641

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                       
Query: 133    tagttacagttccatatgaccctggtgcggattctgcttcc 173
              |||||||||||||||||| || ||  ||| |||||||||||
Sbjct: 107524 tagttacagttccatatggccttgccgcgaattctgcttcc 107564
to top
>gb|AY817668.1| Homo sapiens arsenic (+3 oxidation state) methyltransferase (AS3MT)
             gene, complete cds
          Length = 38888

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 195   tctccatctgtcaaatgaag 214
             ||||||||||||||||||||
Sbjct: 34294 tctccatctgtcaaatgaag 34275



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 268   tctccatctgtcaaatgaag 287
             ||||||||||||||||||||
Sbjct: 34294 tctccatctgtcaaatgaag 34275
to top
>gb|AC157211.7| Mus musculus chromosome 1, clone RP23-204C6, complete sequence
          Length = 206840

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 194    ttctccatctgtcaaatgaa 213
              ||||||||||||||||||||
Sbjct: 139356 ttctccatctgtcaaatgaa 139337



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 267    ttctccatctgtcaaatgaa 286
              ||||||||||||||||||||
Sbjct: 139356 ttctccatctgtcaaatgaa 139337
to top
>gb|AC164646.3| Mus musculus BAC clone RP24-262I1 from chromosome 3, complete
            sequence
          Length = 175326

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 91   taaacacagatttctttcat 110
            ||||||||||||||||||||
Sbjct: 2294 taaacacagatttctttcat 2313
to top
>gb|AC118194.8| Mus musculus chromosome 3, clone RP23-464I9, complete sequence
          Length = 180205

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 91    taaacacagatttctttcat 110
             ||||||||||||||||||||
Sbjct: 91517 taaacacagatttctttcat 91536
to top
>gb|AC161169.10| Mus musculus chromosome 5, clone RP24-102B13, complete sequence
          Length = 239061

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 5      ggtgtccatacaaggatctc 24
              ||||||||||||||||||||
Sbjct: 211105 ggtgtccatacaaggatctc 211124
to top
>emb|Z98255.2|HS279N11 Human DNA sequence from clone RP1-279N11 on chromosome Xq11.2-13.3
            Contain the 3' end of a novel gene, complete sequence
          Length = 169998

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 197  tccatctgtcaaatgaagtt 216
            ||||||||||||||||||||
Sbjct: 9226 tccatctgtcaaatgaagtt 9245



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 270  tccatctgtcaaatgaagtt 289
            ||||||||||||||||||||
Sbjct: 9226 tccatctgtcaaatgaagtt 9245
to top
>emb|AL358790.22| Human DNA sequence from clone RP11-753C18 on chromosome 10 Contains three
              novel genes, the CYP17A1 gene for cytochrome P450 17A1, a
              profilin 1 (PFN1) pseudogene, the gene for
              methyltransferase cyt19, an unactive progesterone receptor
              23 kD (TEBP) pseudogene, a ribosomal protein L22 (RPL22)
              pseudogene and a CpG island, complete sequence
          Length = 131753

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 195    tctccatctgtcaaatgaag 214
              ||||||||||||||||||||
Sbjct: 125852 tctccatctgtcaaatgaag 125833



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 268    tctccatctgtcaaatgaag 287
              ||||||||||||||||||||
Sbjct: 125852 tctccatctgtcaaatgaag 125833
to top
>gb|AC009144.5|AC009144 Homo sapiens chromosome 16 clone RP11-551E2, complete sequence
          Length = 173758

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 195    tctccatctgtcaaatgaag 214
              ||||||||||||||||||||
Sbjct: 109885 tctccatctgtcaaatgaag 109866



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 268    tctccatctgtcaaatgaag 287
              ||||||||||||||||||||
Sbjct: 109885 tctccatctgtcaaatgaag 109866
to top
>gb|AC102383.7| Mus musculus chromosome 1, clone RP24-312K8, complete sequence
          Length = 142805

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 89    cctaaacacagatttctttcatgcaaaa 116
             |||||||||| |||||||||||| ||||
Sbjct: 57950 cctaaacacaaatttctttcatggaaaa 57977
to top
>gb|AC007011.1|AC007011 Homo sapiens chromosome 16 clone 165E7, complete sequence
          Length = 161264

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 192    gcttctccatctgtcaaatg 211
              ||||||||||||||||||||
Sbjct: 104715 gcttctccatctgtcaaatg 104696



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 265    gcttctccatctgtcaaatg 284
              ||||||||||||||||||||
Sbjct: 104715 gcttctccatctgtcaaatg 104696


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,544,316
Number of Sequences: 3902068
Number of extensions: 3544316
Number of successful extensions: 60822
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 60789
Number of HSP's gapped (non-prelim): 33
length of query: 387
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 365
effective length of database: 17,147,199,772
effective search space: 6258727916780
effective search space used: 6258727916780
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top