ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl22b03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GAT1B_XENLA (P23768) GATA-binding factor 1-B (Transcription fact... 32 0.50
2GAT1A_XENLA (P23767) GATA-binding factor 1-A (Transcription fact... 31 0.65
3PRA12_HUMAN (O95522) PRAME family member DJ1198H6.2 30 1.5

>GAT1B_XENLA (P23768) GATA-binding factor 1-B (Transcription factor xGATA-1B)|
          Length = 364

 Score = 31.6 bits (70), Expect = 0.50
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = +2

Query: 230 NHFTRNPRLSHSAPVLSYYY 289
           +HF ++PR+SHS P +SY Y
Sbjct: 334 HHFLQSPRMSHSTPAVSYRY 353



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>GAT1A_XENLA (P23767) GATA-binding factor 1-A (Transcription factor xGATA-1A)|
          Length = 359

 Score = 31.2 bits (69), Expect = 0.65
 Identities = 11/18 (61%), Positives = 16/18 (88%)
 Frame = +2

Query: 230 NHFTRNPRLSHSAPVLSY 283
           +HF ++PR+SHSAP +SY
Sbjct: 332 HHFLQSPRISHSAPAVSY 349



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>PRA12_HUMAN (O95522) PRAME family member DJ1198H6.2|
          Length = 483

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
 Frame = +1

Query: 163 GRAVQLSS*IMKTKRCFRMPEIEPFHAKPAPQ-XXXXXXXXXXXHCIAGSIC 315
           GR  QL + +MKT R  R P+I  F   P P+            HC+  + C
Sbjct: 427 GRFSQLGAELMKTLRDLRQPKIIVFSTVPCPRCGIRASYDLEPSHCLLNACC 478


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,951,376
Number of Sequences: 219361
Number of extensions: 679871
Number of successful extensions: 1320
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1298
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1320
length of database: 80,573,946
effective HSP length: 94
effective length of database: 59,954,012
effective search space used: 1438896288
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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