ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl22a11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1DDB1_LYCES (Q6QNU4) DNA damage binding protein 1 (UV-damaged DNA... 124 1e-28
2DDB1_LYCCS (Q6E7D1) DNA damage binding protein 1 (UV-damaged DNA... 124 1e-28
3DDB1A_ARATH (Q9M0V3) DNA damage binding protein 1a (UV-damaged D... 121 8e-28
4DDB1B_ARATH (O49552) DNA damage binding protein 1b (UV-damaged D... 116 2e-26
5DDB1_HUMAN (Q16531) DNA damage-binding protein 1 (Damage-specifi... 79 6e-15
6DDB1_CERAE (P33194) DNA damage-binding protein 1 (Damage-specifi... 79 6e-15
7DDB1_SCHPO (O13807) DNA damage-binding protein 1 (Damage-specifi... 48 9e-06
8CPSF1_DROME (Q9V726) Cleavage and polyadenylation specificity fa... 37 0.027
9RSE1_YEAST (Q04693) Pre-mRNA splicing factor RSE1 (RNA splicing ... 36 0.035
10RSE1_DEBHA (Q6BYK1) Pre-mRNA-splicing factor RSE1 36 0.046
11RSE1_CANAL (Q5A7S5) Pre-mRNA-splicing factor RSE1 35 0.10
12Y109_NPVOP (O10348) Hypothetical 44.3 kDa protein (ORF109) 32 0.67
13IFNG_MOSBE (Q647G2) Interferon gamma precursor (IFN-gamma) 32 0.67
14IFNG_SIGHI (Q9QXX2) Interferon gamma precursor (IFN-gamma) 32 0.67
15SY124_ARATH (O64791) Putative syntaxin-124 (AtSYP124) 32 0.87
16SY125_ARATH (Q9SXB0) Putative syntaxin-125 (AtSYP125) 31 1.1
17SIN3A_HUMAN (Q96ST3) Paired amphipathic helix protein Sin3a (Tra... 30 3.3
18SIN3A_MOUSE (Q60520) Paired amphipathic helix protein Sin3a (Tra... 30 3.3
19SMRC2_MOUSE (Q6PDG5) SWI/SNF-related matrix-associated actin-dep... 29 4.3
20APOL4_HUMAN (Q9BPW4) Apolipoprotein-L4 precursor (Apolipoprotein... 29 4.3
21CPSF1_CAEEL (Q9N4C2) Probable cleavage and polyadenylation speci... 29 5.7
22BRO1_YEAST (P48582) Vacuolar sorting protein BRO1 (BRO domain-co... 28 7.4
23CO4A2_ASCSU (P27393) Collagen alpha-2(IV) chain precursor 28 7.4
24YHY2_YEAST (P38870) Hypothetical 90.1 kDa protein in OYE2-GND1 i... 28 7.4
25CO5A3_HUMAN (P25940) Collagen alpha-3(V) chain precursor 28 7.4
26G168_PARPR (P17053) G surface protein, allelic form 168 precursor 28 7.4
27MODA_MYCTU (P0A5Y0) Molybdate-binding protein precursor 28 9.7
28MODA_MYCBO (P0A5Y1) Molybdate-binding protein precursor 28 9.7
29ODP2_BUCAI (P57302) Dihydrolipoyllysine-residue acetyltransferas... 28 9.7
30GATB_WOLSU (Q7M7Y2) Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransfe... 28 9.7
31RSE1_ASHGO (Q753D4) Pre-mRNA-splicing factor RSE1 28 9.7
32SY121_ARATH (Q9ZSD4) Syntaxin-121 (AtSYP121) (Syntaxin-related p... 28 9.7

>DDB1_LYCES (Q6QNU4) DNA damage binding protein 1 (UV-damaged DNA-binding protein|
            1) (High pigmentation protein 1)
          Length = 1090

 Score =  124 bits (310), Expect = 1e-28
 Identities = 59/76 (77%), Positives = 69/76 (90%)
 Frame = -2

Query: 434  QATLVKFIKGVGSLSHEQWRSFHNDKKTSEARNFLDGDLIESFLDLNRSKMEEVAKAMAV 255
            Q  L K IKGVG LSHEQWRSF+N+KKT +A+NFLDGDLIESFLDL+R++MEE++KAM+V
Sbjct: 1015 QTNLRKVIKGVGGLSHEQWRSFYNEKKTVDAKNFLDGDLIESFLDLSRNRMEEISKAMSV 1074

Query: 254  PVEELSKRVEELTRLH 207
            PVEEL KRVEELTRLH
Sbjct: 1075 PVEELMKRVEELTRLH 1090



to top

>DDB1_LYCCS (Q6E7D1) DNA damage binding protein 1 (UV-damaged DNA-binding protein|
            1)
          Length = 1095

 Score =  124 bits (310), Expect = 1e-28
 Identities = 59/76 (77%), Positives = 69/76 (90%)
 Frame = -2

Query: 434  QATLVKFIKGVGSLSHEQWRSFHNDKKTSEARNFLDGDLIESFLDLNRSKMEEVAKAMAV 255
            Q  L K IKGVG LSHEQWRSF+N+KKT +A+NFLDGDLIESFLDL+R++MEE++KAM+V
Sbjct: 1020 QTNLRKVIKGVGGLSHEQWRSFYNEKKTVDAKNFLDGDLIESFLDLSRNRMEEISKAMSV 1079

Query: 254  PVEELSKRVEELTRLH 207
            PVEEL KRVEELTRLH
Sbjct: 1080 PVEELMKRVEELTRLH 1095



to top

>DDB1A_ARATH (Q9M0V3) DNA damage binding protein 1a (UV-damaged DNA-binding|
            protein 1a) (DDB1a)
          Length = 1088

 Score =  121 bits (303), Expect = 8e-28
 Identities = 58/76 (76%), Positives = 70/76 (92%)
 Frame = -2

Query: 434  QATLVKFIKGVGSLSHEQWRSFHNDKKTSEARNFLDGDLIESFLDLNRSKMEEVAKAMAV 255
            Q++L K IKGVG LSHEQWRSF+N+K+T+EARNFLDGDLIESFLDL+R+KME+++K+M V
Sbjct: 1013 QSSLRKVIKGVGGLSHEQWRSFNNEKRTAEARNFLDGDLIESFLDLSRNKMEDISKSMNV 1072

Query: 254  PVEELSKRVEELTRLH 207
             VEEL KRVEELTRLH
Sbjct: 1073 QVEELCKRVEELTRLH 1088



to top

>DDB1B_ARATH (O49552) DNA damage binding protein 1b (UV-damaged DNA-binding|
            protein 1b) (DDB1b)
          Length = 1088

 Score =  116 bits (291), Expect = 2e-26
 Identities = 56/76 (73%), Positives = 66/76 (86%)
 Frame = -2

Query: 434  QATLVKFIKGVGSLSHEQWRSFHNDKKTSEARNFLDGDLIESFLDLNRSKMEEVAKAMAV 255
            Q +L K IKGVG LSHEQWRSF+N+K+T+EA+ +LDGDLIESFLDL+R KMEE++K M V
Sbjct: 1013 QTSLRKVIKGVGGLSHEQWRSFNNEKRTAEAKGYLDGDLIESFLDLSRGKMEEISKGMDV 1072

Query: 254  PVEELSKRVEELTRLH 207
             VEEL KRVEELTRLH
Sbjct: 1073 QVEELCKRVEELTRLH 1088



to top

>DDB1_HUMAN (Q16531) DNA damage-binding protein 1 (Damage-specific DNA-binding|
            protein 1) (UV-damaged DNA-binding factor) (DDB p127
            subunit) (DDBa) (UV-damaged DNA-binding protein 1)
            (UV-DDB 1) (Xeroderma pigmentosum group E-complementing
            protein) (XPCe)
          Length = 1140

 Score = 78.6 bits (192), Expect = 6e-15
 Identities = 41/86 (47%), Positives = 52/86 (60%), Gaps = 10/86 (11%)
 Frame = -2

Query: 434  QATLVKFIKGVGSLSHEQWRSFHNDKKTSEARNFLDGDLIESFLDLNRSKMEEVAKAM-- 261
            Q  L K IK VG + H  WRSFH ++KT  A  F+DGDLIESFLD++R KM+EV   +  
Sbjct: 1055 QNRLNKVIKSVGKIEHSFWRSFHTERKTEPATGFIDGDLIESFLDISRPKMQEVVANLQY 1114

Query: 260  --------AVPVEELSKRVEELTRLH 207
                        ++L K VEELTR+H
Sbjct: 1115 DDGSGMKREATADDLIKVVEELTRIH 1140



to top

>DDB1_CERAE (P33194) DNA damage-binding protein 1 (Damage-specific DNA-binding|
            protein 1) (DDB p127 subunit) (DDBa) (UV-damaged
            DNA-binding protein 1) (UV-DDB 1)
          Length = 1140

 Score = 78.6 bits (192), Expect = 6e-15
 Identities = 41/86 (47%), Positives = 52/86 (60%), Gaps = 10/86 (11%)
 Frame = -2

Query: 434  QATLVKFIKGVGSLSHEQWRSFHNDKKTSEARNFLDGDLIESFLDLNRSKMEEVAKAM-- 261
            Q  L K IK VG + H  WRSFH ++KT  A  F+DGDLIESFLD++R KM+EV   +  
Sbjct: 1055 QNRLNKVIKSVGKIEHSFWRSFHTERKTEPATGFIDGDLIESFLDISRPKMQEVVANLQY 1114

Query: 260  --------AVPVEELSKRVEELTRLH 207
                        ++L K VEELTR+H
Sbjct: 1115 DDGSGMKREATADDLIKVVEELTRIH 1140



to top

>DDB1_SCHPO (O13807) DNA damage-binding protein 1 (Damage-specific DNA-binding|
            protein 1)
          Length = 1072

 Score = 48.1 bits (113), Expect = 9e-06
 Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 6/82 (7%)
 Frame = -2

Query: 434  QATLVKFIKGVGSLSHEQWRSFHNDKKTSEARNFLDGDLIESFLDLNRSKMEEVAKA--- 264
            Q  + K I   G LSH++W+ +  + +TS + + +DG LIES L L    + E+      
Sbjct: 991  QDNIRKVIPSFGGLSHKEWKEYRGENETSPS-DLIDGSLIESILGLREPILNEIVNGGHE 1049

Query: 263  ---MAVPVEELSKRVEELTRLH 207
               + + V++L   +E L +LH
Sbjct: 1050 GTKLDISVQDLKSIIENLEKLH 1071



to top

>CPSF1_DROME (Q9V726) Cleavage and polyadenylation specificity factor, 160 kDa|
            subunit (CPSF 160 kDa subunit) (CPSF-160) (dCPSF)
          Length = 1455

 Score = 36.6 bits (83), Expect = 0.027
 Identities = 23/77 (29%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
 Frame = -2

Query: 434  QATLVKFIKGVGSLSHEQWRSFHNDKKT--SEARNFLDGDLIESFLDLNRSKMEEVAKAM 261
            Q  L+ + + +  L+ +++R+  + KK   + +R  +DGDLI S+  +  S+  EVAK +
Sbjct: 1375 QNVLLSYQEHLCGLNPKEYRTLKSSKKQGINPSRCIIDGDLIWSYRLMANSERNEVAKKI 1434

Query: 260  AVPVEELSKRVEELTRL 210
                EE+   + E+ RL
Sbjct: 1435 GTRTEEILGDLLEIERL 1451



to top

>RSE1_YEAST (Q04693) Pre-mRNA splicing factor RSE1 (RNA splicing and ER to Golgi|
            transport factor 1) (Spliceosome-associated protein 130)
          Length = 1361

 Score = 36.2 bits (82), Expect = 0.035
 Identities = 19/58 (32%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
 Frame = -2

Query: 389  HEQWRSFHNDKKTSEARNFLDGDLIESFLDLNRSKMEEVAKAM-AVPVEELSKRVEEL 219
            H+++RS++     +  R  +DGDL E+FL L+ ++ E +AK + +V VE++ + + E+
Sbjct: 1304 HQEYRSYY-----APVRKVIDGDLCENFLRLSLNEQEFLAKNLKSVQVEDIIQTINEV 1356



to top

>RSE1_DEBHA (Q6BYK1) Pre-mRNA-splicing factor RSE1|
          Length = 1256

 Score = 35.8 bits (81), Expect = 0.046
 Identities = 18/57 (31%), Positives = 32/57 (56%)
 Frame = -2

Query: 389  HEQWRSFHNDKKTSEARNFLDGDLIESFLDLNRSKMEEVAKAMAVPVEELSKRVEEL 219
            H ++RS++N  K     N +DGDLIE F +L++S    +   +     E+ K++ E+
Sbjct: 1199 HLKFRSYYNPVK-----NVMDGDLIERFYELSQSMKIRIGTELNRTPREIEKKISEM 1250



to top

>RSE1_CANAL (Q5A7S5) Pre-mRNA-splicing factor RSE1|
          Length = 1219

 Score = 34.7 bits (78), Expect = 0.10
 Identities = 18/57 (31%), Positives = 34/57 (59%)
 Frame = -2

Query: 389  HEQWRSFHNDKKTSEARNFLDGDLIESFLDLNRSKMEEVAKAMAVPVEELSKRVEEL 219
            H + RS++N  K     N +DGDL+E FL+ + S   E+++ +   V ++ K++ +L
Sbjct: 1162 HLKLRSYYNPIK-----NVIDGDLLERFLEFDISLKIEISRKLNKSVNDIEKKLIDL 1213



to top

>Y109_NPVOP (O10348) Hypothetical 44.3 kDa protein (ORF109)|
          Length = 390

 Score = 32.0 bits (71), Expect = 0.67
 Identities = 19/81 (23%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
 Frame = -2

Query: 398 SLSHEQWRSFHNDKKTSEARNFLDGDLIESFLDLNRSKMEEVAKAMA-VPVEELSKRVEE 222
           +L HE+  S +N    +  R  L GD+  +   +NR+ ++ V  A   + + + S+ + E
Sbjct: 224 NLPHEEVDSLYNKLNWARTRRLLRGDIPSNCATVNRASLQYVKDAQTLLHIAKCSQTIVE 283

Query: 221 LTRL--H*VAPCRVHPVLFVR 165
             R+    + P ++ P++ V+
Sbjct: 284 FVRIFQQLIFPYQIVPIVIVK 304



to top

>IFNG_MOSBE (Q647G2) Interferon gamma precursor (IFN-gamma)|
          Length = 166

 Score = 32.0 bits (71), Expect = 0.67
 Identities = 14/60 (23%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
 Frame = -2

Query: 380 WRSFHNDKKTSEARNFLDGDLIESFLDLNRSKMEEVAKAMAVPVEELS---KRVEELTRL 210
           + +F +D+    + + +  D+ + FL+ +  K+E+  K + +PV++L    K + EL ++
Sbjct: 80  FENFKDDQVIQRSMDIIKQDMFQKFLNGSSEKLEDFKKLIQIPVDDLQIQRKAINELIKV 139



to top

>IFNG_SIGHI (Q9QXX2) Interferon gamma precursor (IFN-gamma)|
          Length = 170

 Score = 32.0 bits (71), Expect = 0.67
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
 Frame = -2

Query: 359 KKTSEARNFLDGDLIESFLDLNRSKMEEVAKAMAVPVEELS---KRVEEL 219
           K   E+ N +  DLI +F + +R KM++  K   +PV +L    K V EL
Sbjct: 84  KTIQESINTIRADLIVNFFNNSREKMDDFIKLTTIPVNDLQVQRKAVNEL 133



to top

>SY124_ARATH (O64791) Putative syntaxin-124 (AtSYP124)|
          Length = 303

 Score = 31.6 bits (70), Expect = 0.87
 Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 8/60 (13%)
 Frame = -2

Query: 413 IKGVGSL------SHEQWRSFHNDKKTSEARNFLDGDLIESF--LDLNRSKMEEVAKAMA 258
           +KGV +L      S+E+ ++ HN KK  E R  +DGD+ +    + + + K+E + KA A
Sbjct: 47  MKGVETLYKSLQDSNEECKTVHNAKKVKELRAKMDGDVAQVLKRVKMIKQKLEALEKANA 106



to top

>SY125_ARATH (Q9SXB0) Putative syntaxin-125 (AtSYP125)|
          Length = 298

 Score = 31.2 bits (69), Expect = 1.1
 Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 8/60 (13%)
 Frame = -2

Query: 413 IKGVGSL------SHEQWRSFHNDKKTSEARNFLDGD--LIESFLDLNRSKMEEVAKAMA 258
           +KGV +L      S+E+ ++ HN KK  E R  +DGD  ++   + + + K+E + KA A
Sbjct: 42  MKGVEALYKKLQDSNEECKTVHNAKKVKELRAKMDGDVAMVLKRVKIIKQKLEALEKANA 101



to top

>SIN3A_HUMAN (Q96ST3) Paired amphipathic helix protein Sin3a (Transcriptional|
            corepressor Sin3a) (Histone deacetylase complex subunit
            Sin3a)
          Length = 1273

 Score = 29.6 bits (65), Expect = 3.3
 Identities = 29/91 (31%), Positives = 42/91 (46%)
 Frame = -2

Query: 365  NDKKTSEARNFLDGDLIESFLDLNRSKMEEVAKAMAVPVEELSKRVEELTRLH*VAPCRV 186
            N KKT E  + LD   +E    LN  KM  V K+     E+   R   L R H  +  RV
Sbjct: 1151 NSKKTMENVDSLDK--LECRFKLNSYKMVYVIKS-----EDYMYRRTALLRAH-QSHERV 1202

Query: 185  HPVLFVRFRCVVNRWRPENDPLQVFVATFRF 93
               L  RF+  V++W  E+ P ++   T ++
Sbjct: 1203 SKRLHQRFQAWVDKWTKEHVPREMAAETSKW 1233



to top

>SIN3A_MOUSE (Q60520) Paired amphipathic helix protein Sin3a (Transcriptional|
            corepressor Sin3a) (Histone deacetylase complex subunit
            Sin3a)
          Length = 1282

 Score = 29.6 bits (65), Expect = 3.3
 Identities = 29/91 (31%), Positives = 41/91 (45%)
 Frame = -2

Query: 365  NDKKTSEARNFLDGDLIESFLDLNRSKMEEVAKAMAVPVEELSKRVEELTRLH*VAPCRV 186
            N KKT E  N    D +E    LN  KM  V K+     E+   R   L R H  +  RV
Sbjct: 1160 NSKKTME--NVESLDKLECRFKLNSYKMVYVIKS-----EDYMYRRTALLRAH-QSHERV 1211

Query: 185  HPVLFVRFRCVVNRWRPENDPLQVFVATFRF 93
               L  RF+  V++W  E+ P ++   T ++
Sbjct: 1212 SKRLHQRFQAWVDKWTKEHVPREMAAETSKW 1242



to top

>SMRC2_MOUSE (Q6PDG5) SWI/SNF-related matrix-associated actin-dependent regulator|
            of chromatin subfamily C member 2 (SWI/SNF complex 170
            kDa subunit) (BRG1-associated factor 170)
          Length = 1213

 Score = 29.3 bits (64), Expect = 4.3
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
 Frame = +2

Query: 317  SGRRPGSCGPPTSSCRCGTTA---TARGSGCPRP**T*PGLP 433
            SG  PGS GP     + GTTA     + +G P+P    PG+P
Sbjct: 1000 SGAPPGSLGPSEQIGQAGTTAGPQQPQQAGAPQPGAVPPGVP 1041



to top

>APOL4_HUMAN (Q9BPW4) Apolipoprotein-L4 precursor (Apolipoprotein L-IV)|
           (ApoL-IV)
          Length = 351

 Score = 29.3 bits (64), Expect = 4.3
 Identities = 12/39 (30%), Positives = 24/39 (61%)
 Frame = -2

Query: 323 DLIESFLDLNRSKMEEVAKAMAVPVEELSKRVEELTRLH 207
           +L++  LDL++    E A+++    +EL + + ELT +H
Sbjct: 307 NLVQDSLDLHKGAKSESAESLRQWAQELEENLNELTHIH 345



to top

>CPSF1_CAEEL (Q9N4C2) Probable cleavage and polyadenylation specificity factor,|
            160 kDa subunit (CPSF 160 kDa subunit)
          Length = 1454

 Score = 28.9 bits (63), Expect = 5.7
 Identities = 13/45 (28%), Positives = 26/45 (57%)
 Frame = -2

Query: 344  ARNFLDGDLIESFLDLNRSKMEEVAKAMAVPVEELSKRVEELTRL 210
            ARN +DGD++E +L L+     ++A+ + V    +   + +L R+
Sbjct: 1406 ARNLIDGDVVEQYLHLSLYDKTDLARRLGVGRYHIIDDLMQLRRM 1450



to top

>BRO1_YEAST (P48582) Vacuolar sorting protein BRO1 (BRO domain-containing|
           protein 1) (BCK1-like resistance to osmotic shock
           protein 1) (Vacuolar protein sorting protein 31) (Amino
           acid sensor-independent protein 6) (Nitrogen permease
           inactivating protein
          Length = 844

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
 Frame = -2

Query: 398 SLSHEQWRSFHNDKKTSE---ARNFLDGDLIESFL 303
           S    QWR+F+++K TSE    RN  +G+L  S L
Sbjct: 29  SYGSSQWRTFYDEKATSELDHLRNNANGELAPSSL 63



to top

>CO4A2_ASCSU (P27393) Collagen alpha-2(IV) chain precursor|
          Length = 1763

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = -1

Query: 435 PGNPGQVHQGRGQPEPRAVAVVPQRQEDVGGPQLPG 328
           PG PGQ  +  G P PR    +P +   VG P LPG
Sbjct: 617 PGYPGQKGE-TGFPGPRGQEGLPGKPGIVGAPGLPG 651



to top

>YHY2_YEAST (P38870) Hypothetical 90.1 kDa protein in OYE2-GND1 intergenic|
           region
          Length = 785

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
 Frame = -2

Query: 425 LVKFIKGVGSLSHEQWRSFHNDKKTSEARNFLDGDLIESF-LDLNRSKMEEVAKAMAVPV 249
           L+K IK      ++ W+   N+ +  EA N ++  L+E      N    E+V +   +P+
Sbjct: 60  LIKDIKFYNDFVNKFWKPTLNNLQKMEATNSMNSRLLEVMSKQFNIISTEQVERDCKIPL 119

Query: 248 EELSKRVEELTR 213
           +EL    E   R
Sbjct: 120 QELRDLNESFLR 131



to top

>CO5A3_HUMAN (P25940) Collagen alpha-3(V) chain precursor|
          Length = 1745

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = -1

Query: 435 PGNPGQV--HQGRGQPEPRAVAVVPQRQEDVGGPQLPG 328
           PG PGQ   H  +G P P+ +   P  +   G P +PG
Sbjct: 637 PGPPGQQGNHGSQGLPGPQGLIGTPGEKGPPGNPGIPG 674



to top

>G168_PARPR (P17053) G surface protein, allelic form 168 precursor|
          Length = 2704

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +1

Query: 106  ATNTCRGSFSGRQRFTTQRKRTNKTGCTRHGAT*C 210
            A  TC   + G   +++      K GCT +GAT C
Sbjct: 1637 AATTCDAVYLGTGNYSSANCNEMKAGCTNNGATAC 1671



to top

>MODA_MYCTU (P0A5Y0) Molybdate-binding protein precursor|
          Length = 261

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -2

Query: 317 IESFLDLNRSKMEEVAKAMAVPVEELSKRVEELTRLH 207
           I SF DL R  +  V    +VP    ++R+E+ T +H
Sbjct: 133 IRSFADLTRPGLNVVVCQPSVPCGSATRRIEDATGIH 169



to top

>MODA_MYCBO (P0A5Y1) Molybdate-binding protein precursor|
          Length = 261

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -2

Query: 317 IESFLDLNRSKMEEVAKAMAVPVEELSKRVEELTRLH 207
           I SF DL R  +  V    +VP    ++R+E+ T +H
Sbjct: 133 IRSFADLTRPGLNVVVCQPSVPCGSATRRIEDATGIH 169



to top

>ODP2_BUCAI (P57302) Dihydrolipoyllysine-residue acetyltransferase component of|
           pyruvate dehydrogenase complex (EC 2.3.1.12) (E2)
           (Dihydrolipoamide acetyltransferase component of
           pyruvate dehydrogenase complex)
          Length = 396

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 10/31 (32%), Positives = 21/31 (67%)
 Frame = +1

Query: 310 DSIRSPSRKLRASDVFLSLWNDRHCSWLRLP 402
           DS +S +++L  SD+  ++ N+ H +W+ +P
Sbjct: 159 DSKKSKTKELELSDIQKNIGNNLHRNWMNIP 189



to top

>GATB_WOLSU (Q7M7Y2) Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B|
           (EC 6.3.5.-) (Asp/Glu-ADT subunit B)
          Length = 472

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 16/52 (30%), Positives = 29/52 (55%)
 Frame = -2

Query: 377 RSFHNDKKTSEARNFLDGDLIESFLDLNRSKMEEVAKAMAVPVEELSKRVEE 222
           RS    +++++ R F D DL+  F+D   + MEE  K   +P E+ ++ V +
Sbjct: 258 RSMRGKEESADYRYFPDPDLLPVFID--ATLMEEAEKIPELPDEKRARLVRD 307



to top

>RSE1_ASHGO (Q753D4) Pre-mRNA-splicing factor RSE1|
          Length = 1288

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
 Frame = -2

Query: 380  WRSFHNDKKTSEARNFLDGDLIESFLDLNRSKMEEV-AKAMAVPVEELSKRVEEL 219
            +RS++N       R+  DGDL E FL+L  S+   + A+     V+E+ +R+ ++
Sbjct: 1234 YRSYYNP-----VRHVTDGDLCEQFLELYPSEKNFLAARVDNRSVQEIERRINDM 1283



to top

>SY121_ARATH (Q9ZSD4) Syntaxin-121 (AtSYP121) (Syntaxin-related protein At-Syr1)|
          Length = 346

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 15/42 (35%), Positives = 25/42 (59%)
 Frame = -2

Query: 398 SLSHEQWRSFHNDKKTSEARNFLDGDLIESFLDLNRSKMEEV 273
           S  HEQ ++ HN K   + R+ +DGD+    + L ++KM +V
Sbjct: 69  SSCHEQSKTLHNAKAVKDLRSKMDGDV---GVALKKAKMIKV 107


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,869,883
Number of Sequences: 219361
Number of extensions: 879629
Number of successful extensions: 3728
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 3495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3715
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2511994855
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top