ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl22a11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC130728.2| Oryza sativa (japonica cultivar-group) chromosome... 246 5e-62
2dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 246 5e-62
3dbj|AK104782.1| Oryza sativa (japonica cultivar-group) cDNA clon... 246 5e-62
4dbj|AK065508.1| Oryza sativa (japonica cultivar-group) cDNA clon... 246 5e-62
5dbj|AK059736.1| Oryza sativa (japonica cultivar-group) cDNA clon... 246 5e-62
6dbj|AB037144.1| Oryza sativa (japonica cultivar-group) OsUV-DDB ... 246 5e-62
7ref|XM_476019.1| Oryza sativa (japonica cultivar-group), predic... 242 8e-61
8gb|BT024148.1| Zea mays clone EL01N0440D08 mRNA sequence 196 4e-47
9gb|AY104362.1| Zea mays PCO060159 mRNA sequence 109 8e-21
10ref|XM_785030.1| PREDICTED: Strongylocentrotus purpuratus hypoth... 42 1.5
11ref|NM_118228.2| Arabidopsis thaliana DDB1B (DAMAGED DNA BINDING... 40 5.8
12ref|NM_021099.2| Mus musculus kit oncogene (Kit), mRNA 40 5.8
13ref|XM_956852.1| Neurospora crassa OR74A hypothetical protein (N... 40 5.8
14ref|XM_326439.1| Neurospora crassa OR74A hypothetical protein (N... 40 5.8
15gb|CP000352.1| Ralstonia metallidurans CH34, complete genome 40 5.8
16ref|XM_745943.1| Aspergillus fumigatus Af293 hypothetical protei... 40 5.8
17ref|XM_547518.2| PREDICTED: Canis familiaris similar to Apoptosi... 40 5.8
18gb|AC099575.10| Mus musculus chromosome 14, clone RP23-83E2, com... 40 5.8
19gb|AC110157.7| Mus musculus chromosome 14, clone RP23-151K23, co... 40 5.8
20emb|X65998.1|MMCKITPRO M.musculus genomic DNA of c-kit promoter ... 40 5.8
21gb|AC129091.19| Medicago truncatula clone mth2-15j7, complete se... 40 5.8
22emb|AL353573.10| Human DNA sequence from clone RP11-550E18 on ch... 40 5.8
23ref|XM_964284.1| PREDICTED: Tribolium castaneum similar to CG121... 40 5.8
24ref|XM_964211.1| PREDICTED: Tribolium castaneum similar to CG121... 40 5.8
25ref|XM_962438.1| PREDICTED: Tribolium castaneum similar to CG121... 40 5.8
26emb|Y00864.1|MMCKIT Mouse c-kit mRNA 40 5.8
27emb|AL161554.2|ATCHRIV54 Arabidopsis thaliana DNA chromosome 4, ... 40 5.8
28emb|AL021960.2|ATF7J7 Arabidopsis thaliana DNA chromosome 4, BAC... 40 5.8
29gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome 40 5.8
30gb|AF356350.1|AF356350 Mus musculus c-KIT gene, promoter region ... 40 5.8
31dbj|AK220648.1| Arabidopsis thaliana mRNA for UV-damaged DNA-bin... 40 5.8
32gb|AC149135.2| Medicago truncatula chromosome 2 BAC clone mth2-3... 40 5.8
33dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete g... 40 5.8
34emb|AL731729.10| Mouse DNA sequence from clone RP23-92L12 on chr... 40 5.8
35gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 40 5.8
36gb|AE017221.1| Thermus thermophilus HB27, complete genome 40 5.8
37dbj|AP007294.1| Lotus japonicus genomic DNA, clone:LjT42E17, TM0... 40 5.8 
>gb|AC130728.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0663C08,
             complete sequence
          Length = 142196

 Score =  246 bits (124), Expect = 5e-62
 Identities = 199/224 (88%)
 Strand = Plus / Minus

                                                                         
Query: 202   acctagtgcagtctcgtcagctcctccacccgcttggacagctcctcgacggggaccgcc 261
             |||||||||| ||| |||||||||||||||| |||||| |||||||| ||||||||| ||
Sbjct: 77982 acctagtgcaatctagtcagctcctccaccctcttggatagctcctcaacggggaccccc 77923

                                                                         
Query: 262   atcgccttggccacctcctccatcttggacctgttgaggtcgaggaatgactcaatcagg 321
             ||  |||||||||||||||||||||||   ||| | || || ||||||||||| ||||||
Sbjct: 77922 atacccttggccacctcctccatcttgtttctgcttagatcaaggaatgactcgatcagg 77863

                                                                         
Query: 322   tcgccgtccaggaagttgcgggcctccgacgtcttcttgtcgttgtggaacgaccgccac 381
             || || |||||||| |||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 77862 tcaccatccaggaaattgcgggcctccgacgtcttcttgtcgttgtggaacgaccgccat 77803

                                                         
Query: 382   tgctcgtggctcaggctgcccacgcccttgatgaacttgaccag 425
             ||||| ||||||||| | ||||||||||| |||||||| |||||
Sbjct: 77802 tgctcatggctcaggttccccacgccctttatgaacttcaccag 77759
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  246 bits (124), Expect = 5e-62
 Identities = 199/224 (88%)
 Strand = Plus / Minus

                                                                            
Query: 202      acctagtgcagtctcgtcagctcctccacccgcttggacagctcctcgacggggaccgcc 261
                |||||||||| ||| |||||||||||||||| |||||| |||||||| ||||||||| ||
Sbjct: 29299325 acctagtgcaatctagtcagctcctccaccctcttggatagctcctcaacggggaccccc 29299266

                                                                            
Query: 262      atcgccttggccacctcctccatcttggacctgttgaggtcgaggaatgactcaatcagg 321
                ||  |||||||||||||||||||||||   ||| | || || ||||||||||| ||||||
Sbjct: 29299265 atacccttggccacctcctccatcttgtttctgcttagatcaaggaatgactcgatcagg 29299206

                                                                            
Query: 322      tcgccgtccaggaagttgcgggcctccgacgtcttcttgtcgttgtggaacgaccgccac 381
                || || |||||||| |||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 29299205 tcaccatccaggaaattgcgggcctccgacgtcttcttgtcgttgtggaacgaccgccat 29299146

                                                            
Query: 382      tgctcgtggctcaggctgcccacgcccttgatgaacttgaccag 425
                ||||| ||||||||| | ||||||||||| |||||||| |||||
Sbjct: 29299145 tgctcatggctcaggttccccacgccctttatgaacttcaccag 29299102
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>dbj|AK104782.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-039-C09, full
           insert sequence
          Length = 1135

 Score =  246 bits (124), Expect = 5e-62
 Identities = 199/224 (88%)
 Strand = Plus / Minus

                                                                       
Query: 202 acctagtgcagtctcgtcagctcctccacccgcttggacagctcctcgacggggaccgcc 261
           |||||||||| ||| |||||||||||||||| |||||| |||||||| ||||||||| ||
Sbjct: 734 acctagtgcaatctagtcagctcctccaccctcttggatagctcctcaacggggaccccc 675

                                                                       
Query: 262 atcgccttggccacctcctccatcttggacctgttgaggtcgaggaatgactcaatcagg 321
           ||  |||||||||||||||||||||||   ||| | || || ||||||||||| ||||||
Sbjct: 674 atacccttggccacctcctccatcttgtttctgcttagatcaaggaatgactcgatcagg 615

                                                                       
Query: 322 tcgccgtccaggaagttgcgggcctccgacgtcttcttgtcgttgtggaacgaccgccac 381
           || || |||||||| |||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 614 tcaccatccaggaaattgcgggcctccgacgtcttcttgtcgttgtggaacgaccgccat 555

                                                       
Query: 382 tgctcgtggctcaggctgcccacgcccttgatgaacttgaccag 425
           ||||| ||||||||| | ||||||||||| |||||||| |||||
Sbjct: 554 tgctcatggctcaggttccccacgccctttatgaacttcaccag 511
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>dbj|AK065508.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013026I01, full
            insert sequence
          Length = 3792

 Score =  246 bits (124), Expect = 5e-62
 Identities = 199/224 (88%)
 Strand = Plus / Minus

                                                                        
Query: 202  acctagtgcagtctcgtcagctcctccacccgcttggacagctcctcgacggggaccgcc 261
            |||||||||| ||| |||||||||||||||| |||||| |||||||| ||||||||| ||
Sbjct: 3391 acctagtgcaatctagtcagctcctccaccctcttggatagctcctcaacggggaccccc 3332

                                                                        
Query: 262  atcgccttggccacctcctccatcttggacctgttgaggtcgaggaatgactcaatcagg 321
            ||  |||||||||||||||||||||||   ||| | || || ||||||||||| ||||||
Sbjct: 3331 atacccttggccacctcctccatcttgtttctgcttagatcaaggaatgactcgatcagg 3272

                                                                        
Query: 322  tcgccgtccaggaagttgcgggcctccgacgtcttcttgtcgttgtggaacgaccgccac 381
            || || |||||||| |||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 3271 tcaccatccaggaaattgcgggcctccgacgtcttcttgtcgttgtggaacgaccgccat 3212

                                                        
Query: 382  tgctcgtggctcaggctgcccacgcccttgatgaacttgaccag 425
            ||||| ||||||||| | ||||||||||| |||||||| |||||
Sbjct: 3211 tgctcatggctcaggttccccacgccctttatgaacttcaccag 3168
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>dbj|AK059736.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-202-D04, full
           insert sequence
          Length = 1135

 Score =  246 bits (124), Expect = 5e-62
 Identities = 199/224 (88%)
 Strand = Plus / Minus

                                                                       
Query: 202 acctagtgcagtctcgtcagctcctccacccgcttggacagctcctcgacggggaccgcc 261
           |||||||||| ||| |||||||||||||||| |||||| |||||||| ||||||||| ||
Sbjct: 734 acctagtgcaatctagtcagctcctccaccctcttggatagctcctcaacggggaccccc 675

                                                                       
Query: 262 atcgccttggccacctcctccatcttggacctgttgaggtcgaggaatgactcaatcagg 321
           ||  |||||||||||||||||||||||   ||| | || || ||||||||||| ||||||
Sbjct: 674 atacccttggccacctcctccatcttgtttctgcttagatcaaggaatgactcgatcagg 615

                                                                       
Query: 322 tcgccgtccaggaagttgcgggcctccgacgtcttcttgtcgttgtggaacgaccgccac 381
           || || |||||||| |||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 614 tcaccatccaggaaattgcgggcctccgacgtcttcttgtcgttgtggaacgaccgccat 555

                                                       
Query: 382 tgctcgtggctcaggctgcccacgcccttgatgaacttgaccag 425
           ||||| ||||||||| | ||||||||||| |||||||| |||||
Sbjct: 554 tgctcatggctcaggttccccacgccctttatgaacttcaccag 511
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>dbj|AB037144.1| Oryza sativa (japonica cultivar-group) OsUV-DDB mRNA for UV-damaged
            DNA binding protein, complete cds
          Length = 3658

 Score =  246 bits (124), Expect = 5e-62
 Identities = 199/224 (88%)
 Strand = Plus / Minus

                                                                        
Query: 202  acctagtgcagtctcgtcagctcctccacccgcttggacagctcctcgacggggaccgcc 261
            |||||||||| ||| |||||||||||||||| |||||| |||||||| ||||||||| ||
Sbjct: 3391 acctagtgcaatctagtcagctcctccaccctcttggatagctcctcaacggggaccccc 3332

                                                                        
Query: 262  atcgccttggccacctcctccatcttggacctgttgaggtcgaggaatgactcaatcagg 321
            ||  |||||||||||||||||||||||   ||| | || || ||||||||||| ||||||
Sbjct: 3331 atacccttggccacctcctccatcttgtttctgcttagatcaaggaatgactcgatcagg 3272

                                                                        
Query: 322  tcgccgtccaggaagttgcgggcctccgacgtcttcttgtcgttgtggaacgaccgccac 381
            || || |||||||| |||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 3271 tcaccatccaggaaattgcgggcctccgacgtcttcttgtcgttgtggaacgaccgccat 3212

                                                        
Query: 382  tgctcgtggctcaggctgcccacgcccttgatgaacttgaccag 425
            ||||| ||||||||| | ||||||||||| |||||||| |||||
Sbjct: 3211 tgctcatggctcaggttccccacgccctttatgaacttcaccag 3168
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>ref|XM_476019.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 3273

 Score =  242 bits (122), Expect = 8e-61
 Identities = 197/222 (88%)
 Strand = Plus / Minus

                                                                        
Query: 204  ctagtgcagtctcgtcagctcctccacccgcttggacagctcctcgacggggaccgccat 263
            |||||||| ||| |||||||||||||||| |||||| |||||||| ||||||||| ||||
Sbjct: 3273 ctagtgcaatctagtcagctcctccaccctcttggatagctcctcaacggggacccccat 3214

                                                                        
Query: 264  cgccttggccacctcctccatcttggacctgttgaggtcgaggaatgactcaatcaggtc 323
              |||||||||||||||||||||||   ||| | || || ||||||||||| ||||||||
Sbjct: 3213 acccttggccacctcctccatcttgtttctgcttagatcaaggaatgactcgatcaggtc 3154

                                                                        
Query: 324  gccgtccaggaagttgcgggcctccgacgtcttcttgtcgttgtggaacgaccgccactg 383
             || |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 3153 accatccaggaaattgcgggcctccgacgtcttcttgtcgttgtggaacgaccgccattg 3094

                                                      
Query: 384  ctcgtggctcaggctgcccacgcccttgatgaacttgaccag 425
            ||| ||||||||| | ||||||||||| |||||||| |||||
Sbjct: 3093 ctcatggctcaggttccccacgccctttatgaacttcaccag 3052
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>gb|BT024148.1| Zea mays clone EL01N0440D08 mRNA sequence
          Length = 1582

 Score =  196 bits (99), Expect = 4e-47
 Identities = 186/215 (86%)
 Strand = Plus / Plus

                                                                       
Query: 214 ctcgtcagctcctccacccgcttggacagctcctcgacggggaccgccatcgccttggcc 273
           ||||||||||| ||||||| ||||||||||||||| ||||||||  |||||||||||| |
Sbjct: 246 ctcgtcagctcttccaccctcttggacagctcctccacggggacgcccatcgccttggac 305

                                                                       
Query: 274 acctcctccatcttggacctgttgaggtcgaggaatgactcaatcaggtcgccgtccagg 333
           |||||||||||||||  || | | ||||| ||||| ||||| |||||||| ||||| |||
Sbjct: 306 acctcctccatcttgctccggctaaggtcaaggaaagactcgatcaggtcaccgtcgagg 365

                                                                       
Query: 334 aagttgcgggcctccgacgtcttcttgtcgttgtggaacgaccgccactgctcgtggctc 393
           ||||| || ||||||| ||||||||||||||| ||||| |||||||| ||||||||||||
Sbjct: 366 aagttccgagcctccgccgtcttcttgtcgttatggaaggaccgccattgctcgtggctc 425

                                              
Query: 394 aggctgcccacgcccttgatgaacttgaccagggt 428
           ||| | || |||||||| ||| |||| || |||||
Sbjct: 426 aggtttccgacgccctttatgtacttcacaagggt 460
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>gb|AY104362.1| Zea mays PCO060159 mRNA sequence
          Length = 1296

 Score =  109 bits (55), Expect = 8e-21
 Identities = 157/191 (82%)
 Strand = Plus / Minus

                                                                       
Query: 204 ctagtgcagtctcgtcagctcctccacccgcttggacagctcctcgacggggaccgccat 263
           |||||| || ||||||||||| |||||   ||||||||| ||||| || |  ||  ||||
Sbjct: 860 ctagtgaagcctcgtcagctcttccacaatcttggacagatcctccaccgaaacgcccat 801

                                                                       
Query: 264 cgccttggccacctcctccatcttggacctgttgaggtcgaggaatgactcaatcaggtc 323
            ||||||| |||| |||||||||||  || | | ||||| ||||| ||||| ||||||||
Sbjct: 800 agccttggacaccacctccatcttgctccggctaaggtcaaggaacgactcgatcaggtc 741

                                                                       
Query: 324 gccgtccaggaagttgcgggcctccgacgtcttcttgtcgttgtggaacgaccgccactg 383
            || || |||||||| || |||||||  |||||||||||||| |||||||||||||| ||
Sbjct: 740 accatcaaggaagttccgtgcctccgctgtcttcttgtcgttatggaacgaccgccattg 681

                      
Query: 384 ctcgtggctca 394
           ||| |||||||
Sbjct: 680 ctcatggctca 670
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>ref|XM_785030.1| PREDICTED: Strongylocentrotus purpuratus hypothetical protein
           LOC585193 (LOC585193), mRNA
          Length = 1668

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 264 cgccttggccacctcctccat 284
           |||||||||||||||||||||
Sbjct: 264 cgccttggccacctcctccat 244
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>ref|NM_118228.2| Arabidopsis thaliana DDB1B (DAMAGED DNA BINDING PROTEIN 1 B)
            AT4G21100 (DDB1B) mRNA, complete cds
          Length = 3390

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 361  tcgttgtggaacgaccgccactgctcgtggct 392
            ||||||| |||||| | |||||||||||||||
Sbjct: 3110 tcgttgttgaacgatctccactgctcgtggct 3079
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>ref|NM_021099.2| Mus musculus kit oncogene (Kit), mRNA
          Length = 5132

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 258  cgccatcgccttggccacct 277
            ||||||||||||||||||||
Sbjct: 2365 cgccatcgccttggccacct 2346
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>ref|XM_956852.1| Neurospora crassa OR74A hypothetical protein (NCU06585.1) partial
            mRNA
          Length = 3123

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 266  ccttggccacctcctccatc 285
            ||||||||||||||||||||
Sbjct: 2548 ccttggccacctcctccatc 2529
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>ref|XM_326439.1| Neurospora crassa OR74A hypothetical protein (NCU06585.1) partial
            mRNA
          Length = 3123

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 266  ccttggccacctcctccatc 285
            ||||||||||||||||||||
Sbjct: 2548 ccttggccacctcctccatc 2529
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>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome
          Length = 3928089

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 261     catcgccttggccacctcctccat 284
               |||||||||||||||||| |||||
Sbjct: 2717222 catcgccttggccacctcttccat 2717245
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>ref|XM_745943.1| Aspergillus fumigatus Af293 hypothetical protein (Afu6g11530)
           partial mRNA
          Length = 438

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 10  ctgctgataaacaacggcga 29
           ||||||||||||||||||||
Sbjct: 278 ctgctgataaacaacggcga 259
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>ref|XM_547518.2| PREDICTED: Canis familiaris similar to Apoptosis stimulating of p53
            protein 2 (Tumor suppressor p53-binding protein 2)
            (p53-binding protein 2) (53BP2) (Bcl2-binding protein)
            (Bbp) (LOC490397), mRNA
          Length = 3792

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 212  gtctcgtcagctcctccacc 231
            ||||||||||||||||||||
Sbjct: 1102 gtctcgtcagctcctccacc 1083
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>gb|AC099575.10| Mus musculus chromosome 14, clone RP23-83E2, complete sequence
          Length = 138102

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 276   ctcctccatcttggacctgt 295
             ||||||||||||||||||||
Sbjct: 32235 ctcctccatcttggacctgt 32254
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>gb|AC110157.7| Mus musculus chromosome 14, clone RP23-151K23, complete sequence
          Length = 243114

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 276    ctcctccatcttggacctgt 295
              ||||||||||||||||||||
Sbjct: 203840 ctcctccatcttggacctgt 203859
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>emb|X65998.1|MMCKITPRO M.musculus genomic DNA of c-kit promoter region
          Length = 1161

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 258 cgccatcgccttggccacct 277
           ||||||||||||||||||||
Sbjct: 30  cgccatcgccttggccacct 11
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>gb|AC129091.19| Medicago truncatula clone mth2-15j7, complete sequence
          Length = 106540

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 61    aaagttacactcttatcaaa 80
             ||||||||||||||||||||
Sbjct: 92380 aaagttacactcttatcaaa 92361
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>emb|AL353573.10| Human DNA sequence from clone RP11-550E18 on chromosome 9 Contains a
             solute carrier family 25 (mitochondrial carrier; adenine
             nucleotide translocator), member 5 (SLC25A5) (ANT2)
             pseudogene, complete sequence
          Length = 166664

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 148   tttacaacacagcgaaaacgaacaaata 175
             |||||| ||||| |||||||||||||||
Sbjct: 20150 tttacagcacagtgaaaacgaacaaata 20177
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>ref|XM_964284.1| PREDICTED: Tribolium castaneum similar to CG1213-PA, isoform A
           (LOC657849), mRNA
          Length = 1353

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 249 gacggggaccgccatcgcct 268
           ||||||||||||||||||||
Sbjct: 54  gacggggaccgccatcgcct 73
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>ref|XM_964211.1| PREDICTED: Tribolium castaneum similar to CG1213-PA, isoform A
           (LOC657769), mRNA
          Length = 1441

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 249 gacggggaccgccatcgcct 268
           ||||||||||||||||||||
Sbjct: 51  gacggggaccgccatcgcct 70
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>ref|XM_962438.1| PREDICTED: Tribolium castaneum similar to CG1213-PA, isoform A
           (LOC655877), mRNA
          Length = 1444

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 249 gacggggaccgccatcgcct 268
           ||||||||||||||||||||
Sbjct: 54  gacggggaccgccatcgcct 73
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>emb|Y00864.1|MMCKIT Mouse c-kit mRNA
          Length = 5098

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 258  cgccatcgccttggccacct 277
            ||||||||||||||||||||
Sbjct: 2365 cgccatcgccttggccacct 2346
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>emb|AL161554.2|ATCHRIV54 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 54
          Length = 198715

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 361   tcgttgtggaacgaccgccactgctcgtggct 392
             ||||||| |||||| | |||||||||||||||
Sbjct: 70651 tcgttgttgaacgatctccactgctcgtggct 70682
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>emb|AL021960.2|ATF7J7 Arabidopsis thaliana DNA chromosome 4, BAC clone  F7J7 (ESSA project)
          Length = 91387

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 361   tcgttgtggaacgaccgccactgctcgtggct 392
             ||||||| |||||| | |||||||||||||||
Sbjct: 12448 tcgttgttgaacgatctccactgctcgtggct 12479
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>gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome
          Length = 2932766

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 233    gcttggacagctcctcgacg 252
              ||||||||||||||||||||
Sbjct: 221434 gcttggacagctcctcgacg 221453
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>gb|AF356350.1|AF356350 Mus musculus c-KIT gene, promoter region and partial cds
          Length = 1210

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 258 cgccatcgccttggccacct 277
           ||||||||||||||||||||
Sbjct: 75  cgccatcgccttggccacct 56
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>dbj|AK220648.1| Arabidopsis thaliana mRNA for UV-damaged DNA-binding protein-like,
            complete cds, clone: RAFL21-64-B09
          Length = 3586

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 361  tcgttgtggaacgaccgccactgctcgtggct 392
            ||||||| |||||| | |||||||||||||||
Sbjct: 3264 tcgttgttgaacgatctccactgctcgtggct 3233
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>gb|AC149135.2| Medicago truncatula chromosome 2 BAC clone mth2-31g23, complete
             sequence
          Length = 113812

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 61    aaagttacactcttatcaaa 80
             ||||||||||||||||||||
Sbjct: 94991 aaagttacactcttatcaaa 95010
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>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome
          Length = 1849742

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 264    cgccttggccacctcctcca 283
              ||||||||||||||||||||
Sbjct: 290449 cgccttggccacctcctcca 290468
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>emb|AL731729.10| Mouse DNA sequence from clone RP23-92L12 on chromosome X, complete
             sequence
          Length = 216656

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 55    acagataaagttacactctt 74
             ||||||||||||||||||||
Sbjct: 39645 acagataaagttacactctt 39626
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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 257     ccgccatcgccttggccacc 276
               ||||||||||||||||||||
Sbjct: 1957900 ccgccatcgccttggccacc 1957919
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>gb|AE017221.1| Thermus thermophilus HB27, complete genome
          Length = 1894877

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 264     cgccttggccacctcctcca 283
               ||||||||||||||||||||
Sbjct: 1595005 cgccttggccacctcctcca 1594986
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>dbj|AP007294.1| Lotus japonicus genomic DNA, clone:LjT42E17, TM0355, complete sequence
          Length = 124602

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 71     tcttatcaaagtcgaaaaca 90
              ||||||||||||||||||||
Sbjct: 118575 tcttatcaaagtcgaaaaca 118594


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,440,712
Number of Sequences: 3902068
Number of extensions: 3440712
Number of successful extensions: 63791
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 63497
Number of HSP's gapped (non-prelim): 286
length of query: 435
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 413
effective length of database: 17,147,199,772
effective search space: 7081793505836
effective search space used: 7081793505836
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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