>VE4_HPV16 (P06922) Probable protein E4|
          Length = 95

 Score = 34.7 bits (78), Expect = 0.063
 Identities = 19/56 (33%), Positives = 28/56 (50%)
 Frame = +3

Query: 51  PTSPTSPLPRVFLHKPKKEQHMATDRDEGQANEWPLVAMKTPAPWVPNRHLPCSCC 218
           PT+P  P+P+     PKK + +++D+D+ Q  E       TPA        P SCC
Sbjct: 24  PTTPPRPIPKPSPWAPKKHRRLSSDQDQSQTPE-------TPA-------TPLSCC 65

>LOLB_PSEAE (P42812) Outer-membrane lipoprotein lolB precursor|
          Length = 205

 Score = 30.8 bits (68), Expect = 0.91
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = +1

Query: 64  LPLYLESSYTNLKRNNIWQLIEMKVRQMNGPWLP*KLQLHG 186
           L L  +S    L+++  WQ+   +  + NG WLP +L+LHG
Sbjct: 147 LTLDADSRLARLEQDG-WQIEYTRYAEQNGYWLPERLKLHG 186

>LOLB_PSEPK (Q88PX4) Outer-membrane lipoprotein lolB precursor|
          Length = 205

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 115 WQLIEMKVRQMNGPWLP*KLQLHG 186
           WQ+  +   + NG WLP +L+LHG
Sbjct: 163 WQVQYLSYTEQNGYWLPERLKLHG 186

>VRP1_YEAST (P37370) Verprolin|
          Length = 817

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 26/80 (32%), Positives = 36/80 (45%), Gaps = 6/80 (7%)
 Frame = +3

Query: 45  ILPTSPTSPLPRVFLHKPKKEQ---HMATDRDEGQANEWPLVAMKTP---APWVPNRHLP 206
           I+P+SP  PLP      PK  Q   HM + R   ++++     +  P   AP +P+  LP
Sbjct: 170 IVPSSPAPPLPLSGASAPKVPQNRPHMPSVRPAHRSHQRKSSNISLPSVSAPPLPSASLP 229

Query: 207 CSCC*CWHQVSFHPQATNPP 266
                    VS  PQA  PP
Sbjct: 230 T-------HVSNPPQAPPPP 242

>CABIN_RAT (O88480) Calcineurin-binding protein Cabin 1 (Calcineurin inhibitor)|
            (CAIN)
          Length = 2182

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 23/98 (23%), Positives = 38/98 (38%), Gaps = 2/98 (2%)
 Frame = +3

Query: 6    PVGGSTISHTGTAILPTSPTSPLPRVFLHKPKKEQHMATDRDEGQANEWPLVAMKTPAPW 185
            PVG +    TG          P PR+   +P +++   +   E    E  +   + PAP 
Sbjct: 1754 PVGPTEPMDTGETAARHPDLEPTPRLLPGRPPRDRGPESRSAELSLEELSISTRQQPAPL 1813

Query: 186  VPNRHLPCSCC--*CWHQVSFHPQATNPPDRRDPQYLQ 293
            VP+   P +        + + HP+   P   R  + LQ
Sbjct: 1814 VPSPVTPTTAAPTTMGARAAGHPEEAPPRPNRKRKLLQ 1851

>ABCBA_HUMAN (Q9NRK6) ATP-binding cassette sub-family B member 10, mitochondrial|
           precursor (ATP-binding cassette transporter 10) (ABC
           transporter 10 protein) (Mitochondrial ATP-binding
           cassette 2) (M-ABC2)
          Length = 738

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +3

Query: 150 WPLVAMKTPAPWVPNRHLPCSCC*CWHQVSFHPQATNP 263
           WPL  ++ P+P  P R LP +C   W   S  P + +P
Sbjct: 7   WPLRLLEPPSPAEPGRLLPVAC--VWAAASRVPGSLSP 42

>YWV3_CAEEL (Q11077) Hypothetical protein B0403.3 precursor|
          Length = 270

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -3

Query: 127 LSVAICCSFLGLCRKTRGRGEVGDVGRIAVPVWEIV 20
           L   +C S+   C K+RGR   GD  RI  P  +IV
Sbjct: 9   LFAVVCISY---CHKSRGRRHFGDEYRINTPACDIV 41

>Y441_MYCPN (P75337) Hypothetical protein MPN441 (H08_orf102)|
          Length = 102

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
 Frame = +3

Query: 114 MATDRDEGQANEWPLVAMKT----PAPWVPNRHLPCSCC*CWHQVSFHP 248
           + +D+  G++  WPL   +T    P+ W P   LP  CC  +  ++  P
Sbjct: 27  LVSDKLNGKSITWPLSVPRTYLVRPSFWTPFVWLPSCCCFGFSSIASSP 75

>MEF2D_MOUSE (Q63943) Myocyte-specific enhancer factor 2D|
          Length = 514

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 22/86 (25%), Positives = 31/86 (36%), Gaps = 28/86 (32%)
 Frame = +3

Query: 9   VGGSTISHTGTAILPT------------------SPTSPLPRVF----------LHKPKK 104
           + GS + H G A+  T                  SP  P P VF          L  P  
Sbjct: 409 IPGSPLPHVGAALTVTTHPHISIKSEPVSPSRERSPAPPPPAVFPAARPEPGEGLSSPAG 468

Query: 105 EQHMATDRDEGQANEWPLVAMKTPAP 182
             +   DRD+G+ +  P + +  PAP
Sbjct: 469 GSYETGDRDDGRGDFGPTLGLLRPAP 494

>Y378_HALSA (Q9HS70) UPF0204 protein Vng0378c|
          Length = 390

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
 Frame = +3

Query: 12  GGSTISHTGTAILPTSPTSP---LPRVFLHKPKKEQHMATDRDEGQAN 146
           GG  I H G  I P + TS       V LH+  +E+      DEG+ N
Sbjct: 343 GGEAIEHDGRTIAPAAVTSTETVRADVALHERPRERVRRPSDDEGKGN 390

>HELZ_HUMAN (P42694) Probable helicase with zinc-finger domain (EC 3.6.1.-)|
          Length = 1942

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +3

Query: 96  PKKEQHMATDRDEGQANEWPLVAMKTPAPWVPNR 197
           P  E H A DR +     +P ++M    PW PNR
Sbjct: 599 PLCEMHYALDRIKDNGVLFPDISMTPTIPWSPNR 632

>MEF2D_HUMAN (Q14814) Myocyte-specific enhancer factor 2D|
          Length = 521

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 22/86 (25%), Positives = 31/86 (36%), Gaps = 28/86 (32%)
 Frame = +3

Query: 9   VGGSTISHTGTAILPT------------------SPTSPLPRVF----------LHKPKK 104
           + GS + H G A+  T                  SP  P P VF          L  P  
Sbjct: 416 IPGSPLPHVGAALTVTTHPHISIKSEPVSPSRERSPAPPPPAVFPAARPEPGDGLSSPAG 475

Query: 105 EQHMATDRDEGQANEWPLVAMKTPAP 182
             +   DRD+G+ +  P + +  PAP
Sbjct: 476 GSYETGDRDDGRGDFGPTLGLLRPAP 501

>TPOR_HUMAN (P40238) Thrombopoietin receptor precursor (TPO-R)|
           (Myeloproliferative leukemia protein) (C-mpl) (CD110
           antigen)
          Length = 635

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -1

Query: 216 SSCKASDGLAPMELEFSWQPRAIHLPDLHLYQLPY 112
           S  KA  G  P EL+ SW+  A  + D   Y+L Y
Sbjct: 137 SIIKAMGGSQPGELQISWEEPAPEISDFLRYELRY 171

>LOLB_PSESM (Q888C4) Outer-membrane lipoprotein lolB precursor|
          Length = 205

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +1

Query: 115 WQLIEMKVRQMNGPWLP*KLQLHG 186
           WQ+  +   + NG WLP +++LHG
Sbjct: 163 WQVEYLSYVEQNGYWLPERVKLHG 186

>PHK_NOCFA (Q5Z066) Probable phosphoketolase (EC 4.1.2.-)|
          Length = 822

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +3

Query: 108 QHMATDRDEGQANEWPLVAMKTPAPW 185
           Q  A D  +G    WP++ ++TP  W
Sbjct: 295 QRAARDGADGSRPAWPMIVLRTPKGW 320

>TDGF2_HUMAN (P51864) Teratocarcinoma-derived growth factor 2 (Epidermal growth|
           factor-like cripto protein CR3) (Cripto-3 growth factor)
          Length = 188

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = +3

Query: 183 WVPNRHLPCSCC*CWH-QVSFHPQATNP 263
           W+P +   CS C CWH Q+   PQA  P
Sbjct: 123 WLPKK---CSLCKCWHGQLRCFPQAFLP 147

>TDGF1_HUMAN (P13385) Teratocarcinoma-derived growth factor 1 precursor|
           (Epidermal growth factor-like cripto protein CR1)
           (Cripto-1 growth factor) (CRGF)
          Length = 188

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = +3

Query: 183 WVPNRHLPCSCC*CWH-QVSFHPQATNP 263
           W+P +   CS C CWH Q+   PQA  P
Sbjct: 123 WLPKK---CSLCKCWHGQLRCFPQAFLP 147


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,828,598
Number of Sequences: 219361
Number of extensions: 1101211
Number of successful extensions: 3374
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 3288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3370
length of database: 80,573,946
effective HSP length: 77
effective length of database: 63,683,149
effective search space used: 1528395576
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)