ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl22a08 |
|---|---|
| Clone Library Name | barley_pub |
>RS12_ONYPE (Q6YQW1) 30S ribosomal protein S12| Length = 139 Score = 29.6 bits (65), Expect = 2.9 Identities = 20/82 (24%), Positives = 37/82 (45%) Frame = +2 Query: 53 YGPSSLKKYTEDHGSPKPQLFCMHLPNVVKKKPLLEEAKTSRNTAKTLHVLLISSQRMKT 232 YG + L+K + + SP+ C+ + + KKP K +R V L + + Sbjct: 26 YGFNVLQKKAKHYSSPQKMGVCLRVTTMTPKKPNSALRKFAR-------VRLSNGSEVTA 78 Query: 233 AIPFIALAGQKHNSATDHGHKI 298 IP + + Q+H+S G ++ Sbjct: 79 YIPGVGHSLQEHSSVLVRGGRV 100
>DDEF1_BOVIN (O97902) 130-kDa phosphatidylinositol 4,5-biphosphate-dependent| ARF1 GTPase-activating protein (PIP2-dependent ARF1 GAP) (ADP-ribosylation factor-directed GTPase-activating protein 1) (ARF GTPase-activating protein 1) (Development and differe Length = 1129 Score = 29.3 bits (64), Expect = 3.7 Identities = 21/63 (33%), Positives = 27/63 (42%) Frame = +2 Query: 80 TEDHGSPKPQLFCMHLPNVVKKKPLLEEAKTSRNTAKTLHVLLISSQRMKTAIPFIALAG 259 TED+ SP F L N LLEEA TA Q++K ++ I +G Sbjct: 35 TEDYNSPTTSSFTTRLHNCRNTVTLLEEALDQDRTA---------LQKVKKSVKAIYNSG 85 Query: 260 QKH 268 Q H Sbjct: 86 QDH 88
>SCN7A_HUMAN (Q01118) Sodium channel protein type 7 alpha subunit (Sodium| channel protein type VII alpha subunit) (Putative voltage-gated sodium channel alpha subunit Nax) (Sodium channel protein, cardiac and skeletal muscle alpha-subunit) Length = 1682 Score = 29.3 bits (64), Expect = 3.7 Identities = 16/45 (35%), Positives = 20/45 (44%) Frame = +1 Query: 130 KRRQKKTAIGGGKDV*KHCKNSPCSTHILTTYENSHSFYRPSRPK 264 K Q K+ GG K+ K +S CST + E FY R K Sbjct: 851 KEIQSKSGDGGSKEKIKQSSSSECSTVDIAISEEEEMFYGGERSK 895
>CWC27_NEUCR (Q7SBX8) Peptidyl-prolyl isomerase cwc-27 (EC 5.2.1.8)| Length = 541 Score = 29.3 bits (64), Expect = 3.7 Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 9/74 (12%) Frame = +2 Query: 71 KKYTEDHGSPKPQLFCMHLPNVVKKKPLLEE-----AKTSRNTAKTLHVLLISSQRMKTA 235 KK+ +H SP+P+ KKK LLE+ A + +T+H + ++ K+A Sbjct: 323 KKHYSEHSSPEPE--------EPKKKSLLEKTNEEIAALKASMKRTIHSEPVKQEKKKSA 374 Query: 236 ----IPFIALAGQK 265 IP A+ G+K Sbjct: 375 LEQLIPDTAIRGRK 388
>DDEF1_MOUSE (Q9QWY8) 130-kDa phosphatidylinositol 4,5-biphosphate-dependent| ARF1 GTPase-activating protein (PIP2-dependent ARF1 GAP) (ADP-ribosylation factor-directed GTPase-activating protein 1) (ARF GTPase-activating protein 1) (Development and differe Length = 1147 Score = 29.3 bits (64), Expect = 3.7 Identities = 21/63 (33%), Positives = 27/63 (42%) Frame = +2 Query: 80 TEDHGSPKPQLFCMHLPNVVKKKPLLEEAKTSRNTAKTLHVLLISSQRMKTAIPFIALAG 259 TED+ SP F L N LLEEA TA Q++K ++ I +G Sbjct: 35 TEDYNSPTTSSFTTRLHNCRNTVTLLEEALDQDRTA---------LQKVKKSVKAIYNSG 85 Query: 260 QKH 268 Q H Sbjct: 86 QDH 88
>PVG3_SCHPO (Q9USX0) Beta-1,3-galactosyltransferase pvg3 (EC 2.4.1.134)| (Pyruvylated Gal-beta-1,3-epitope synthesis protein 3) (PvGal synthesis protein 3) Length = 378 Score = 28.9 bits (63), Expect = 4.9 Identities = 13/26 (50%), Positives = 18/26 (69%) Frame = +2 Query: 329 RIIFIGVHLLTHMLILSTVASWFSKL 406 RI I VH L + +LSTV++WF K+ Sbjct: 323 RIDAIAVHKLKSIPLLSTVSNWFKKM 348
>FADB_PHOLL (Q7MZ92) Fatty oxidation complex alpha subunit [Includes: Enoyl-CoA| hydratase (EC 4.2.1.17); Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8); 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35); 3-hydroxybutyryl-CoA epimerase (EC 5.1.2. Length = 728 Score = 28.9 bits (63), Expect = 4.9 Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 2/48 (4%) Frame = +2 Query: 101 KPQLFC-MHLPNVVKKKPLLEEAKTSRNTAKTLHVLLISSQRM-KTAI 238 +P+ FC MH N V + PL+E + + + KT+ ++ + +M KT I Sbjct: 442 RPENFCGMHFFNPVHRMPLVEVIRGEKTSEKTISTVVAYASKMGKTPI 489
>RYR2_HUMAN (Q92736) Ryanodine receptor 2 (Cardiac muscle-type ryanodine| receptor) (RyR2) (RYR-2) (Cardiac muscle ryanodine receptor-calcium release channel) (hRYR-2) Length = 4967 Score = 28.9 bits (63), Expect = 4.9 Identities = 22/91 (24%), Positives = 38/91 (41%), Gaps = 20/91 (21%) Frame = +2 Query: 155 LEEAKTSRNTAKTLHVLLISSQR---------MKTAIPFIALAGQKH-------NSATDH 286 LE + S + LH +L+ S +K+ I + G+ H + H Sbjct: 562 LERLEASSGILEVLHCVLVESPEALNIIKEGHIKSIISLLDKHGRNHKVLDVLCSLCVCH 621 Query: 287 GHKISSNRHLLC----LGRIIFIGVHLLTHM 367 G + SN+HL+C GR + + L+ H+ Sbjct: 622 GVAVRSNQHLICDNLLPGRDLLLQTRLVNHV 652
>FADB_SHEON (Q8EKR9) Fatty oxidation complex alpha subunit [Includes: Enoyl-CoA| hydratase (EC 4.2.1.17); Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8); 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35); 3-hydroxybutyryl-CoA epimerase (EC 5.1.2. Length = 716 Score = 28.9 bits (63), Expect = 4.9 Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 2/48 (4%) Frame = +2 Query: 101 KPQLFC-MHLPNVVKKKPLLEEAKTSRNTAKTL-HVLLISSQRMKTAI 238 KP+ FC MH N V K PL+E + ++ +T+ V+ +S+ KT I Sbjct: 442 KPERFCGMHFFNPVHKMPLVEVIRGEHSSEETIASVVAYASKMGKTPI 489
>RYR2_RABIT (P30957) Ryanodine receptor 2 (Cardiac muscle-type ryanodine| receptor) (RyR2) (RYR-2) (Cardiac muscle ryanodine receptor-calcium release channel) Length = 4969 Score = 28.9 bits (63), Expect = 4.9 Identities = 22/91 (24%), Positives = 38/91 (41%), Gaps = 20/91 (21%) Frame = +2 Query: 155 LEEAKTSRNTAKTLHVLLISSQR---------MKTAIPFIALAGQKH-------NSATDH 286 LE + S + LH +L+ S +K+ I + G+ H + H Sbjct: 562 LERLEASSGILEVLHCVLVESPEALNIIKEGHIKSIISLLDKHGRNHKVLDVLCSLCVCH 621 Query: 287 GHKISSNRHLLC----LGRIIFIGVHLLTHM 367 G + SN+HL+C GR + + L+ H+ Sbjct: 622 GVAVRSNQHLICDNLLPGRDLLLQTRLVNHV 652
>HISX_AZOBR (P18786) Putative histidinol dehydrogenase (EC 1.1.1.23) (HDH)| (Fragment) Length = 128 Score = 28.5 bits (62), Expect = 6.4 Identities = 15/48 (31%), Positives = 22/48 (45%) Frame = +2 Query: 248 ALAGQKHNSATDHGHKISSNRHLLCLGRIIFIGVHLLTHMLILSTVAS 391 A AG +H + K S RH+ C + + VH H LS +A+ Sbjct: 64 AHAGGQHQQGREGQEKASGRRHVRCHIPLCALSVHTTMHTHALSGIAT 111
>FADB_VIBF1 (Q5E8X6) Fatty oxidation complex alpha subunit [Includes: Enoyl-CoA| hydratase (EC 4.2.1.17); Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8); 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35); 3-hydroxybutyryl-CoA epimerase (EC 5.1.2. Length = 725 Score = 28.5 bits (62), Expect = 6.4 Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 2/48 (4%) Frame = +2 Query: 101 KPQLFC-MHLPNVVKKKPLLEEAKTSRNTAKTL-HVLLISSQRMKTAI 238 +P+ FC MH N V + PL+E + + + +T+ V+ +SQ KT I Sbjct: 442 RPENFCGMHFFNPVHRMPLVEVIRGEKTSQQTIDRVVAYASQMGKTPI 489
>FADB_YERPE (Q8ZAN0) Fatty oxidation complex alpha subunit [Includes: Enoyl-CoA| hydratase (EC 4.2.1.17); Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8); 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35); 3-hydroxybutyryl-CoA epimerase (EC 5.1.2. Length = 729 Score = 28.5 bits (62), Expect = 6.4 Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 2/48 (4%) Frame = +2 Query: 101 KPQLFC-MHLPNVVKKKPLLEEAKTSRNTAKTL-HVLLISSQRMKTAI 238 +P+ FC MH N V + PL+E + ++ + KTL V+ ++Q KT I Sbjct: 442 RPENFCGMHFFNPVHRMPLVEIIRGAKTSDKTLAAVVAYATQMGKTPI 489
>FADB_YERPS (Q66FR8) Fatty oxidation complex alpha subunit [Includes: Enoyl-CoA| hydratase (EC 4.2.1.17); Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8); 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35); 3-hydroxybutyryl-CoA epimerase (EC 5.1.2. Length = 729 Score = 28.1 bits (61), Expect = 8.3 Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 2/48 (4%) Frame = +2 Query: 101 KPQLFC-MHLPNVVKKKPLLEEAKTSRNTAKTL-HVLLISSQRMKTAI 238 +P+ FC MH N V + PL+E + ++ + KTL V+ ++Q KT I Sbjct: 442 RPENFCGMHFFNPVHQMPLVEIIRGAKTSDKTLAAVVAYATQMGKTPI 489 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 63,483,860 Number of Sequences: 219361 Number of extensions: 1269182 Number of successful extensions: 3179 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 3120 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3178 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 2169600302 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
