ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl22a06 |
|---|---|
| Clone Library Name | barley_pub |
>SPL11_ORYSA (Q64HA9) Spotted leaf protein 11 (Spotted leaf11) (Cell| death-related protein SPL11) Length = 694 Score = 58.9 bits (141), Expect = 5e-09 Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 1/70 (1%) Frame = -2 Query: 348 PGHFLCPILQEIMEDPCVAADGYTYDRKAIETWV-SMKDKSPMTNLRLPSRSLIPNHSLR 172 P F CPI E+M+DP + + G TY+R IE W+ S P T ++ + +L PN+ LR Sbjct: 274 PDEFRCPISLELMKDPVIVSTGQTYERACIEKWIASGHHTCPTTQQKMSTSALTPNYVLR 333 Query: 171 SAIMDWRSKN 142 S I W N Sbjct: 334 SLISQWCETN 343
>PUB14_ARATH (Q8VZ40) E3 ubiquitin ligase PUB14 (EC 6.3.2.-) (Prototypical U-box| domain protein 14) Length = 632 Score = 53.5 bits (127), Expect = 2e-07 Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 1/70 (1%) Frame = -2 Query: 348 PGHFLCPILQEIMEDPCVAADGYTYDRKAIETWVSMKDKS-PMTNLRLPSRSLIPNHSLR 172 P +F CPI E+M+DP + + G TY+R +I+ W+ K+ P + L L PN+ L+ Sbjct: 249 PEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLK 308 Query: 171 SAIMDWRSKN 142 S I W N Sbjct: 309 SLIALWCESN 318
>STUB1_HUMAN (Q9UNE7) STIP1 homology and U box-containing protein 1 (EC 6.3.2.-)| (STIP1 homology and U-box-containing protein 1) (Carboxy terminus of Hsp70-interacting protein) (E3 ubiquitin protein ligase CHIP) (CLL-associated antigen KW-8) (Antigen NY-C Length = 303 Score = 42.4 bits (98), Expect = 4e-04 Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 2/68 (2%) Frame = -2 Query: 339 FLC-PILQEIMEDPCVAADGYTYDRKAIETWVS-MKDKSPMTNLRLPSRSLIPNHSLRSA 166 +LC I E+M +PC+ G TYDRK IE + + P+T L LIPN +++ Sbjct: 230 YLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQEQLIPNLAMKEV 289 Query: 165 IMDWRSKN 142 I + S+N Sbjct: 290 IDAFISEN 297
>STUB1_MOUSE (Q9WUD1) STIP1 homology and U box-containing protein 1 (EC 6.3.2.-)| (STIP1 homology and U-box-containing protein 1) (Carboxy terminus of Hsp70-interacting protein) (E3 ubiquitin protein ligase CHIP) Length = 304 Score = 42.4 bits (98), Expect = 4e-04 Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 2/68 (2%) Frame = -2 Query: 339 FLC-PILQEIMEDPCVAADGYTYDRKAIETWVS-MKDKSPMTNLRLPSRSLIPNHSLRSA 166 +LC I E+M +PC+ G TYDRK IE + + P+T L LIPN +++ Sbjct: 231 YLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQEQLIPNLAMKEV 290 Query: 165 IMDWRSKN 142 I + S+N Sbjct: 291 IDAFISEN 298
>STUB1_CHICK (Q5ZHY5) STIP1 homology and U box-containing protein 1 (EC 6.3.2.-)| (STIP1 homology and U-box-containing protein 1) Length = 314 Score = 41.6 bits (96), Expect = 8e-04 Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 2/68 (2%) Frame = -2 Query: 339 FLC-PILQEIMEDPCVAADGYTYDRKAIETWVS-MKDKSPMTNLRLPSRSLIPNHSLRSA 166 +LC I E+M +PC+ G TYDRK IE + + P+T L LIPN +++ Sbjct: 241 YLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMKEV 300 Query: 165 IMDWRSKN 142 I + S+N Sbjct: 301 IDAFISEN 308
>UBE4_CAEEL (Q09349) Probable ubiquitin conjugation factor E4| Length = 980 Score = 39.7 bits (91), Expect = 0.003 Identities = 20/65 (30%), Positives = 28/65 (43%) Frame = -2 Query: 348 PGHFLCPILQEIMEDPCVAADGYTYDRKAIETWVSMKDKSPMTNLRLPSRSLIPNHSLRS 169 P F PI+ IM DP G+ DR IE + +P L L P+ L++ Sbjct: 907 PEEFKDPIMDAIMVDPVKLPSGHVMDRAVIERHLLSTPNNPFNRAPLSHNELSPDSELKA 966 Query: 168 AIMDW 154 I +W Sbjct: 967 KIQEW 971
>PRP19_RAT (Q9JMJ4) Pre-mRNA-splicing factor 19 (PRP19/PSO4 homolog) (Neuronal| differentiation-related gene protein) Length = 504 Score = 35.0 bits (79), Expect = 0.072 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%) Frame = -2 Query: 336 LCPILQEIMEDPCVA-ADGYTYDRKAIETWVSMKDKSPMTNLRLPSRSLI 190 +C I E+ E PCV+ + Y+R+ IE +++ P+ N L LI Sbjct: 4 ICSISNEVPEHPCVSPVSNHVYERRLIEKYIAENGTDPINNQPLSEEQLI 53
>PRP19_MOUSE (Q99KP6) Pre-mRNA-splicing factor 19 (PRP19/PSO4 homolog) (Nuclear| matrix protein 200) (Nuclear matrix protein SNEV) Length = 504 Score = 35.0 bits (79), Expect = 0.072 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%) Frame = -2 Query: 336 LCPILQEIMEDPCVA-ADGYTYDRKAIETWVSMKDKSPMTNLRLPSRSLI 190 +C I E+ E PCV+ + Y+R+ IE +++ P+ N L LI Sbjct: 4 ICSISNEVPEHPCVSPVSNHVYERRLIEKYIAENGTDPINNQPLSEEQLI 53
>PRP19_HUMAN (Q9UMS4) Pre-mRNA-splicing factor 19 (PRP19/PSO4 homolog) (Nuclear| matrix protein 200) (hPso4) Length = 504 Score = 35.0 bits (79), Expect = 0.072 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%) Frame = -2 Query: 336 LCPILQEIMEDPCVA-ADGYTYDRKAIETWVSMKDKSPMTNLRLPSRSLI 190 +C I E+ E PCV+ + Y+R+ IE +++ P+ N L LI Sbjct: 4 ICSISNEVPEHPCVSPVSNHVYERRLIEKYIAENGTDPINNQPLSEEQLI 53
>PRP19_CHICK (Q5ZMA2) Pre-mRNA-splicing factor 19 (PRP19/PSO4 homolog)| Length = 505 Score = 35.0 bits (79), Expect = 0.072 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%) Frame = -2 Query: 336 LCPILQEIMEDPCVA-ADGYTYDRKAIETWVSMKDKSPMTNLRLPSRSLI 190 +C I E+ E PCV+ + Y+R+ IE +++ P+ N L LI Sbjct: 4 ICSISNEVPEHPCVSPVSNHVYERRLIEKYIAENGTDPVNNQPLSEEQLI 53
>YNN1_CAEEL (Q03605) Hypothetical RING finger protein T02C1.1 in chromosome III| Length = 160 Score = 34.3 bits (77), Expect = 0.12 Identities = 18/64 (28%), Positives = 33/64 (51%) Frame = -2 Query: 339 FLCPILQEIMEDPCVAADGYTYDRKAIETWVSMKDKSPMTNLRLPSRSLIPNHSLRSAIM 160 F C + + +PC+ G++Y R IE+ +++ +K P+ R + + I N L S M Sbjct: 6 FCCAVCLDFFVEPCIIECGHSYCRFCIESHLNINEKCPL--CRAHTGNPIRNRQLESLTM 63 Query: 159 DWRS 148 + S Sbjct: 64 SYVS 67
>UFD2_SCHPO (Q9HE05) Ubiquitin conjugation factor E4 (Ubiquitin fusion| degradation protein 2) (UB fusion protein 2) Length = 1010 Score = 33.5 bits (75), Expect = 0.21 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 1/63 (1%) Frame = -2 Query: 348 PGHFLCPILQEIMEDPCV-AADGYTYDRKAIETWVSMKDKSPMTNLRLPSRSLIPNHSLR 172 P +FL P++ IM+DP V G + DR I+ + P L + PN +LR Sbjct: 932 PDYFLDPLMFTIMKDPVVLPRSGISIDRSTIKAHLLSDATDPFNRTPLTLDDVTPNDTLR 991 Query: 171 SAI 163 I Sbjct: 992 EEI 994
>CTAG2_HUMAN (O75638) Cancer/testis antigen 2 (L antigen family member 1)| (LAGE-1 protein) (ESO-2 protein) Length = 210 Score = 31.2 bits (69), Expect = 1.0 Identities = 21/64 (32%), Positives = 25/64 (39%), Gaps = 1/64 (1%) Frame = -1 Query: 424 GRRSQGSQGD-EGPSSPVGVSCGRGGARAFPLPHSSGNHGGPMXXXXXXXXRPEGDRDVG 248 GR + GS GD +GP P G+ G GG P + GP P G G Sbjct: 5 GRGTGGSTGDADGPGGP-GIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRG 63 Query: 247 EHEG 236 H G Sbjct: 64 PHGG 67
>COCA1_MOUSE (Q60847) Collagen alpha-1(XII) chain precursor| Length = 3119 Score = 30.8 bits (68), Expect = 1.4 Identities = 18/41 (43%), Positives = 22/41 (53%) Frame = -1 Query: 424 GRRSQGSQGDEGPSSPVGVSCGRGGARAFPLPHSSGNHGGP 302 G R GSQG GP P G +G +R P P S+G+ G P Sbjct: 2988 GERGTGSQGPRGPPGPPG---PQGESRTGP-PGSTGSRGPP 3024
>PRP19_CAEEL (Q10051) PRP19/PSO4 homolog| Length = 492 Score = 30.8 bits (68), Expect = 1.4 Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 1/51 (1%) Frame = -2 Query: 339 FLCPILQEIMEDPCVA-ADGYTYDRKAIETWVSMKDKSPMTNLRLPSRSLI 190 F+C I E+ EDP V+ G+ +DR+ I +++ P+++ L L+ Sbjct: 3 FVCGISGELTEDPVVSQVSGHIFDRRLIVKFIAENGTDPISHGELSEDQLV 53
>VRP2_SALTY (P21454) 65 kDa virulence protein| Length = 591 Score = 30.8 bits (68), Expect = 1.4 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 3/44 (6%) Frame = -1 Query: 424 GRRSQGSQGDEGPSS---PVGVSCGRGGARAFPLPHSSGNHGGP 302 G ++ G +G +S P+ +S RG A A LP+SSG GP Sbjct: 23 GGKALSQSGPDGLASITLPLPISAERGFAPALALPYSSGGGNGP 66
>CO1A2_ONCMY (O93484) Collagen alpha-2(I) chain precursor| Length = 1356 Score = 30.4 bits (67), Expect = 1.8 Identities = 16/38 (42%), Positives = 21/38 (55%) Frame = -1 Query: 412 QGSQGDEGPSSPVGVSCGRGGARAFPLPHSSGNHGGPM 299 +GS G+ G + P G+ RGGA LP G GGP+ Sbjct: 375 RGSTGEVGATGPAGLRGARGGAGTRGLPGLEG-RGGPI 411 Score = 28.5 bits (62), Expect = 6.7 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 3/63 (4%) Frame = -1 Query: 415 SQGSQGDEGPSSPVGVSCGRGGARAFPLPHSSGNHGG---PMXXXXXXXXRPEGDRDVGE 245 SQG+ G GP+ G G+G + + ++G+ G P P+G++ G Sbjct: 596 SQGAIGARGPAGTPGPDGGKGEPGSVGIVGAAGHQGPGGMPGERGAGGTPGPKGEKGEGG 655 Query: 244 HEG 236 H G Sbjct: 656 HRG 658
>HES4_HUMAN (Q9HCC6) Transcription factor HES-4 (Hairy and enhancer of split 4)| (bHLH factor Hes4) Length = 221 Score = 30.4 bits (67), Expect = 1.8 Identities = 17/47 (36%), Positives = 18/47 (38%), Gaps = 8/47 (17%) Frame = +3 Query: 303 GPP*FPEEWGRGNARAPPR--------PQLTPTGEEGPSSPWLPWLR 419 G P P G APP P G +GP PW PWLR Sbjct: 175 GRPLLPSLGGPFPLLAPPLLPGLTRALPAAPRAGPQGPGGPWRPWLR 221
>CTG1B_HUMAN (P78358) Cancer/testis antigen 1B (L antigen family member 2)| (LAGE-2 protein) (Autoimmunogenic cancer/testis antigen NY-ESO-1) Length = 180 Score = 30.4 bits (67), Expect = 1.8 Identities = 21/64 (32%), Positives = 25/64 (39%), Gaps = 1/64 (1%) Frame = -1 Query: 424 GRRSQGSQGD-EGPSSPVGVSCGRGGARAFPLPHSSGNHGGPMXXXXXXXXRPEGDRDVG 248 GR + GS GD +GP P G+ G GG P + GP P G G Sbjct: 5 GRGTGGSTGDADGPGGP-GIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRG 63 Query: 247 EHEG 236 H G Sbjct: 64 PHGG 67
>CO4A2_CAEEL (P17140) Collagen alpha-2(IV) chain precursor (Lethal protein 2)| Length = 1758 Score = 30.4 bits (67), Expect = 1.8 Identities = 13/37 (35%), Positives = 19/37 (51%) Frame = -1 Query: 412 QGSQGDEGPSSPVGVSCGRGGARAFPLPHSSGNHGGP 302 +G +G +GP PVG+ RG P + G +G P Sbjct: 74 KGLKGAQGPPGPVGIKGDRGAVGVPGFPGNDGGNGRP 110
>CO3A1_HUMAN (P02461) Collagen alpha-1(III) chain precursor| Length = 1466 Score = 30.0 bits (66), Expect = 2.3 Identities = 15/36 (41%), Positives = 16/36 (44%) Frame = -1 Query: 409 GSQGDEGPSSPVGVSCGRGGARAFPLPHSSGNHGGP 302 GSQG+ G P G S RG P GN G P Sbjct: 555 GSQGESGRPGPPGPSGPRGQPGVMGFPGPKGNDGAP 590
>COCA1_RAT (P70560) Collagen alpha-1(XII) chain (Fragment)| Length = 317 Score = 30.0 bits (66), Expect = 2.3 Identities = 18/41 (43%), Positives = 22/41 (53%) Frame = -1 Query: 424 GRRSQGSQGDEGPSSPVGVSCGRGGARAFPLPHSSGNHGGP 302 G R GSQG GP P G +G +R P P S+G+ G P Sbjct: 186 GERGIGSQGPRGPPGPPG---PQGESRTGP-PGSTGSRGPP 222
>COT2_RAT (O09018) COUP transcription factor 2 (COUP-TF2) (COUP-TF II)| (Apolipoprotein AI regulatory protein 1) (ARP-1) (Ovalbumin upstream promoter beta nuclear receptor) (COUPb) Length = 414 Score = 30.0 bits (66), Expect = 2.3 Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 12/73 (16%) Frame = -1 Query: 415 SQGSQGDEGPSSPVGV-----SCGRGGARAFPLPHSSGNHGGPMXXXXXXXXRPE----- 266 SQ SQ P P G + G+GG + P ++G+ GGP + + Sbjct: 21 SQASQAPPVPGPPPGAPHTPQTPGQGGPASTPAQTAAGSQGGPGGPGSDKQQQQQHIECV 80 Query: 265 --GDRDVGEHEGQ 233 GD+ G+H GQ Sbjct: 81 VCGDKSSGKHYGQ 93
>CO3A1_RAT (P13941) Collagen alpha-1(III) chain precursor| Length = 1463 Score = 30.0 bits (66), Expect = 2.3 Identities = 15/36 (41%), Positives = 16/36 (44%) Frame = -1 Query: 409 GSQGDEGPSSPVGVSCGRGGARAFPLPHSSGNHGGP 302 GSQG+ G P G S RG P GN G P Sbjct: 554 GSQGESGRPGPPGPSGPRGQPGVMGFPGPKGNDGAP 589
>CO1A2_HUMAN (P08123) Collagen alpha-2(I) chain precursor| Length = 1366 Score = 30.0 bits (66), Expect = 2.3 Identities = 16/41 (39%), Positives = 20/41 (48%) Frame = -1 Query: 424 GRRSQGSQGDEGPSSPVGVSCGRGGARAFPLPHSSGNHGGP 302 G+ +G G GP+ PVG + G G P P S GGP Sbjct: 743 GKGPKGENGVVGPTGPVG-AAGPAGPNGPPGPAGSRGDGGP 782
>CO3A1_MOUSE (P08121) Collagen alpha-1(III) chain precursor| Length = 1464 Score = 30.0 bits (66), Expect = 2.3 Identities = 15/36 (41%), Positives = 16/36 (44%) Frame = -1 Query: 409 GSQGDEGPSSPVGVSCGRGGARAFPLPHSSGNHGGP 302 GSQG+ G P G S RG P GN G P Sbjct: 554 GSQGESGRPGPPGPSGPRGQPGVMGFPGPKGNDGAP 589 Score = 28.1 bits (61), Expect = 8.8 Identities = 14/41 (34%), Positives = 18/41 (43%) Frame = -1 Query: 424 GRRSQGSQGDEGPSSPVGVSCGRGGARAFPLPHSSGNHGGP 302 G+ G+ G+ GP G+ RGGA P P GP Sbjct: 672 GKGDSGAPGERGPPGTAGIPGARGGAGP-PGPEGGKGPAGP 711
>COT2_MOUSE (P43135) COUP transcription factor 2 (COUP-TF2) (COUP-TF II)| (Apolipoprotein AI regulatory protein 1) (ARP-1) Length = 414 Score = 29.6 bits (65), Expect = 3.0 Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 12/73 (16%) Frame = -1 Query: 415 SQGSQGDEGPSSPVGV-----SCGRGGARAFPLPHSSGNHGGPMXXXXXXXXRPE----- 266 SQ SQ P P G + G+GG + P ++G GGP + + Sbjct: 21 SQASQAPPVPGPPPGAPHTPQTPGQGGPASTPAQTAAGGQGGPGGPGSDKQQQQQHIECV 80 Query: 265 --GDRDVGEHEGQ 233 GD+ G+H GQ Sbjct: 81 VCGDKSSGKHYGQ 93
>COT2_HUMAN (P24468) COUP transcription factor 2 (COUP-TF2) (COUP-TF II)| (Apolipoprotein AI regulatory protein 1) (ARP-1) Length = 414 Score = 29.6 bits (65), Expect = 3.0 Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 12/73 (16%) Frame = -1 Query: 415 SQGSQGDEGPSSPVGV-----SCGRGGARAFPLPHSSGNHGGPMXXXXXXXXRPE----- 266 SQ SQ P P G + G+GG + P ++G GGP + + Sbjct: 21 SQASQAPPVPGPPPGAPHTPQTPGQGGPASTPAQTAAGGQGGPGGPGSDKQQQQQHIECV 80 Query: 265 --GDRDVGEHEGQ 233 GD+ G+H GQ Sbjct: 81 VCGDKSSGKHYGQ 93
>COT2_BOVIN (Q9TTR7) COUP transcription factor 2 (COUP-TF2) (COUP-TF II)| Length = 414 Score = 29.6 bits (65), Expect = 3.0 Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 12/73 (16%) Frame = -1 Query: 415 SQGSQGDEGPSSPVGV-----SCGRGGARAFPLPHSSGNHGGPMXXXXXXXXRPE----- 266 SQ SQ P P G + G+GG + P ++G GGP + + Sbjct: 21 SQASQAPPVPGPPPGAPHTPQTPGQGGPASTPAQTAAGGQGGPGGPGSDKQQQQQHIECV 80 Query: 265 --GDRDVGEHEGQ 233 GD+ G+H GQ Sbjct: 81 VCGDKSSGKHYGQ 93
>CO1A2_CANFA (O46392) Collagen alpha-2(I) chain precursor| Length = 1366 Score = 29.6 bits (65), Expect = 3.0 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 2/42 (4%) Frame = -1 Query: 421 RRSQGSQGDEGPSSPVGV--SCGRGGARAFPLPHSSGNHGGP 302 R ++G +G+ GP P G S G G P P S GGP Sbjct: 741 RGTKGPKGENGPVGPTGPIGSAGPSGPNGPPGPAGSRGDGGP 782
>CO3A1_CHICK (P12105) Collagen alpha-1(III) chain precursor (Fragments)| Length = 1262 Score = 29.6 bits (65), Expect = 3.0 Identities = 21/62 (33%), Positives = 27/62 (43%) Frame = -1 Query: 409 GSQGDEGPSSPVGVSCGRGGARAFPLPHSSGNHGGPMXXXXXXXXRPEGDRDVGEHEGQV 230 GS+G +GP P G G G +P G G P P+GD+ GE G+ Sbjct: 701 GSEGAKGPPGPPGAPGGTGLPGLQGMPGERGASGSP---------GPKGDK--GEPGGKG 749 Query: 229 AD 224 AD Sbjct: 750 AD 751 Score = 29.6 bits (65), Expect = 3.0 Identities = 14/36 (38%), Positives = 17/36 (47%) Frame = -1 Query: 409 GSQGDEGPSSPVGVSCGRGGARAFPLPHSSGNHGGP 302 G+QG+ G S P G + RG P GN G P Sbjct: 554 GNQGEPGRSGPPGPAGPRGQPGVMGFPGPKGNEGAP 589 Score = 28.5 bits (62), Expect = 6.7 Identities = 15/38 (39%), Positives = 17/38 (44%) Frame = -1 Query: 415 SQGSQGDEGPSSPVGVSCGRGGARAFPLPHSSGNHGGP 302 S G +G+ GP P G S G G R P P GP Sbjct: 345 SPGFKGEAGPPGPAGAS-GNPGERGEPGPQGQAGPPGP 381
>CO4A3_HUMAN (Q01955) Collagen alpha-3(IV) chain precursor (Goodpasture antigen)| Length = 1670 Score = 29.3 bits (64), Expect = 3.9 Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 3/53 (5%) Frame = -1 Query: 412 QGSQGDEGPSSPVGVSCGRGGARAFP---LPHSSGNHGGPMXXXXXXXXRPEG 263 +G+ GD GP P G+ G G P +P +GN G P P G Sbjct: 1206 KGAMGDAGPRGPTGIE-GFPGPPGLPGAIIPGQTGNRGPPGSRGSPGAPGPPG 1257
>CO5A3_HUMAN (P25940) Collagen alpha-3(V) chain precursor| Length = 1745 Score = 29.3 bits (64), Expect = 3.9 Identities = 14/37 (37%), Positives = 19/37 (51%) Frame = -1 Query: 412 QGSQGDEGPSSPVGVSCGRGGARAFPLPHSSGNHGGP 302 +G++G+ GP P+G G G R FP P GP Sbjct: 955 EGAKGELGPPGPLGKE-GPAGLRGFPGPKGGPGDPGP 990
>DED1_CANGA (Q8TFK8) ATP-dependent RNA helicase DED1 (EC 3.6.1.-)| Length = 617 Score = 29.3 bits (64), Expect = 3.9 Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 3/38 (7%) Frame = -2 Query: 345 GHFLCPILQE-IMEDPC--VAADGYTYDRKAIETWVSM 241 G FL P+L E + P A DGY+Y RKA T V M Sbjct: 197 GGFLFPVLSESFLTGPAEKAANDGYSYQRKAFPTAVVM 234
>CO6A2_MOUSE (Q02788) Collagen alpha-2(VI) chain precursor| Length = 1029 Score = 29.3 bits (64), Expect = 3.9 Identities = 17/60 (28%), Positives = 24/60 (40%) Frame = -1 Query: 412 QGSQGDEGPSSPVGVSCGRGGARAFPLPHSSGNHGGPMXXXXXXXXRPEGDRDVGEHEGQ 233 +G+ G++G P G GRG P G+ G P P G R + EG+ Sbjct: 531 RGTPGEKGEPGPPGPEGGRGDFGLKGTPGRKGDKGEPADPGPPGEPGPRGPRGIPGPEGE 590
>CO6A2_CHICK (P15988) Collagen alpha-2(VI) chain precursor| Length = 1022 Score = 29.3 bits (64), Expect = 3.9 Identities = 17/53 (32%), Positives = 23/53 (43%) Frame = -1 Query: 415 SQGSQGDEGPSSPVGVSCGRGGARAFPLPHSSGNHGGPMXXXXXXXXRPEGDR 257 ++G +G+ GP P G RG P + G+ GGP PEG R Sbjct: 407 TKGRKGETGPPGPKGEPGRRGD------PGTKGSKGGPGAKGERGDPGPEGPR 453
>EWS_MOUSE (Q61545) RNA-binding protein EWS| Length = 655 Score = 29.3 bits (64), Expect = 3.9 Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 1/37 (2%) Frame = -1 Query: 409 GSQGDEGPSSPVGVSCGRGGAR-AFPLPHSSGNHGGP 302 G G GP P+G GRGG R FP G+ G P Sbjct: 472 GPGGPGGPGGPMGRMGGRGGDRGGFPPRGPRGSRGNP 508
>UBE4A_RAT (Q6P7A2) Ubiquitin conjugation factor E4 A| Length = 1066 Score = 29.3 bits (64), Expect = 3.9 Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 6/68 (8%) Frame = -2 Query: 339 FLCPILQEIMEDPC------VAADGYTYDRKAIETWVSMKDKSPMTNLRLPSRSLIPNHS 178 FL PI+ +M DP V DG T R + ++SP+T + PN Sbjct: 992 FLDPIMSTLMSDPVVLPSSRVTVDGSTIARHLLSDQTDPFNRSPLT-----MDQIRPNTE 1046 Query: 177 LRSAIMDW 154 L+ I W Sbjct: 1047 LKEKIQRW 1054
>CO1A1_MOUSE (P11087) Collagen alpha-1(I) chain precursor| Length = 1453 Score = 29.3 bits (64), Expect = 3.9 Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 4/40 (10%) Frame = -1 Query: 409 GSQGDEGPSSPVGVSCGRGGARAFP----LPHSSGNHGGP 302 G+ G +GP P G G+ GAR P LP G GGP Sbjct: 441 GATGVQGPPGPAGEE-GKRGARGEPGPSGLPGPPGERGGP 479 Score = 28.1 bits (61), Expect = 8.8 Identities = 13/37 (35%), Positives = 18/37 (48%) Frame = -1 Query: 412 QGSQGDEGPSSPVGVSCGRGGARAFPLPHSSGNHGGP 302 QG +G+ GP P G + G A P + G +G P Sbjct: 356 QGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAP 392
>CO1A1_CHICK (P02457) Collagen alpha-1(I) chain precursor| Length = 1453 Score = 29.3 bits (64), Expect = 3.9 Identities = 14/37 (37%), Positives = 18/37 (48%) Frame = -1 Query: 412 QGSQGDEGPSSPVGVSCGRGGARAFPLPHSSGNHGGP 302 QGS+G+ GP P G + G A P + G G P Sbjct: 356 QGSRGEPGPPGPAGAAGPAGNPGADGQPGAKGATGAP 392
>K1C9_HUMAN (P35527) Keratin, type I cytoskeletal 9 (Cytokeratin-9) (CK-9)| (Keratin-9) (K9) Length = 623 Score = 29.3 bits (64), Expect = 3.9 Identities = 17/40 (42%), Positives = 20/40 (50%) Frame = -1 Query: 424 GRRSQGSQGDEGPSSPVGVSCGRGGARAFPLPHSSGNHGG 305 G R S G G SS V CGRGG +F + G+ GG Sbjct: 44 GGRFSSSSGYGGGSSRV---CGRGGGGSFGYSYGGGSGGG 80
>CO1A1_HUMAN (P02452) Collagen alpha-1(I) chain precursor| Length = 1464 Score = 29.3 bits (64), Expect = 3.9 Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 2/38 (5%) Frame = -1 Query: 409 GSQGDEGPSSPVGVSCGRG--GARAFPLPHSSGNHGGP 302 G +G+ GPS P G + RG G R P P GP Sbjct: 779 GDKGESGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGP 816 Score = 28.1 bits (61), Expect = 8.8 Identities = 17/40 (42%), Positives = 19/40 (47%), Gaps = 4/40 (10%) Frame = -1 Query: 409 GSQGDEGPSSPVGVSCGRGGARAFP----LPHSSGNHGGP 302 G G +GP P G G+ GAR P LP G GGP Sbjct: 452 GPVGVQGPPGPAGEE-GKRGARGEPGPTGLPGPPGERGGP 490 Score = 28.1 bits (61), Expect = 8.8 Identities = 13/37 (35%), Positives = 18/37 (48%) Frame = -1 Query: 412 QGSQGDEGPSSPVGVSCGRGGARAFPLPHSSGNHGGP 302 QG +G+ GP P G + G A P + G +G P Sbjct: 367 QGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAP 403
>EWS_HUMAN (Q01844) RNA-binding protein EWS (EWS oncogene) (Ewing sarcoma| breakpoint region 1 protein) Length = 656 Score = 29.3 bits (64), Expect = 3.9 Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 1/37 (2%) Frame = -1 Query: 409 GSQGDEGPSSPVGVSCGRGGAR-AFPLPHSSGNHGGP 302 G G GP P+G GRGG R FP G+ G P Sbjct: 473 GPGGPGGPGGPMGRMGGRGGDRGGFPPRGPRGSRGNP 509
>CO1A2_RANCA (O42350) Collagen alpha-2(I) chain precursor| Length = 1355 Score = 28.9 bits (63), Expect = 5.1 Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 5/43 (11%) Frame = -1 Query: 415 SQGSQGDEGPSSPVGVSCGRG-----GARAFPLPHSSGNHGGP 302 + GS G GP+ P G + RG GA FP P GP Sbjct: 749 AHGSAGPAGPNGPAGSTGARGDAGPSGATGFPGPAGRAGAPGP 791
>LORI_MOUSE (P18165) Loricrin| Length = 486 Score = 28.9 bits (63), Expect = 5.1 Identities = 17/40 (42%), Positives = 19/40 (47%) Frame = -1 Query: 424 GRRSQGSQGDEGPSSPVGVSCGRGGARAFPLPHSSGNHGG 305 G S G G G SS G SCG GG ++ S G GG Sbjct: 33 GYYSGGGSGCGGGSSGGGSSCGGGGGGSYGGGSSCGGGGG 72
>CO2A1_HUMAN (P02458) Collagen alpha-1(II) chain precursor [Contains:| Chondrocalcin] Length = 1418 Score = 28.9 bits (63), Expect = 5.1 Identities = 22/67 (32%), Positives = 26/67 (38%), Gaps = 15/67 (22%) Frame = -1 Query: 412 QGSQGDEGPSSPVGVSCGRG--------GARAFP-------LPHSSGNHGGPMXXXXXXX 278 QG G GP P GV+ +G GA FP P S+GN G P Sbjct: 797 QGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGK 856 Query: 277 XRPEGDR 257 P+G R Sbjct: 857 DGPKGAR 863
>CO1A1_CANFA (Q9XSJ7) Collagen alpha-1(I) chain precursor| Length = 1460 Score = 28.9 bits (63), Expect = 5.1 Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 2/38 (5%) Frame = -1 Query: 409 GSQGDEGPSSPVGVSCGRG--GARAFPLPHSSGNHGGP 302 G +G+ GPS P G + RG G R P P GP Sbjct: 775 GDKGEAGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGP 812 Score = 28.5 bits (62), Expect = 6.7 Identities = 17/40 (42%), Positives = 19/40 (47%), Gaps = 4/40 (10%) Frame = -1 Query: 409 GSQGDEGPSSPVGVSCGRGGARAFP----LPHSSGNHGGP 302 G G +GP P G G+ GAR P LP G GGP Sbjct: 448 GPTGIQGPPGPAGEE-GKRGARGEPGPTGLPGPPGERGGP 486 Score = 28.1 bits (61), Expect = 8.8 Identities = 13/37 (35%), Positives = 18/37 (48%) Frame = -1 Query: 412 QGSQGDEGPSSPVGVSCGRGGARAFPLPHSSGNHGGP 302 QG +G+ GP P G + G A P + G +G P Sbjct: 363 QGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAP 399
>HTPX_RHILO (Q98ET0) Probable protease htpX homolog (EC 3.4.24.-)| Length = 336 Score = 28.9 bits (63), Expect = 5.1 Identities = 11/23 (47%), Positives = 13/23 (56%) Frame = +3 Query: 336 GNARAPPRPQLTPTGEEGPSSPW 404 G +A PRP GE+ PS PW Sbjct: 282 GGTQAAPRPTPRQAGEQQPSGPW 304
>CPSF6_MOUSE (Q6NVF9) Cleavage and polyadenylation specificity factor 6| Length = 551 Score = 28.5 bits (62), Expect = 6.7 Identities = 14/32 (43%), Positives = 15/32 (46%) Frame = +3 Query: 306 PP*FPEEWGRGNARAPPRPQLTPTGEEGPSSP 401 PP FP + PPRP L P G GP P Sbjct: 227 PPPFPA------GQTPPRPPLGPPGPPGPPGP 252
>CPSF6_HUMAN (Q16630) Cleavage and polyadenylation specificity factor 6| (Cleavage and polyadenylation specificity factor 68 kDa subunit) (CPSF 68 kDa subunit) (Pre-mRNA cleavage factor Im 68-kDa subunit) (Protein HPBRII-4/7) Length = 551 Score = 28.5 bits (62), Expect = 6.7 Identities = 14/32 (43%), Positives = 15/32 (46%) Frame = +3 Query: 306 PP*FPEEWGRGNARAPPRPQLTPTGEEGPSSP 401 PP FP + PPRP L P G GP P Sbjct: 227 PPPFPA------GQTPPRPPLGPPGPPGPPGP 252
>COL39_CAEEL (Q09455) Cuticle collagen 39 precursor| Length = 323 Score = 28.5 bits (62), Expect = 6.7 Identities = 18/48 (37%), Positives = 20/48 (41%), Gaps = 14/48 (29%) Frame = -1 Query: 409 GSQGDEGPSSPVGVS--------------CGRGGARAFPLPHSSGNHG 308 GSQG GP P G + GRGG R+ LP SG G Sbjct: 165 GSQGPAGPRGPAGDAGAPGQVGAPGNPGQAGRGGQRSHGLPGPSGAPG 212
>VE4_HPV5B (P26550) Probable protein E4| Length = 245 Score = 28.5 bits (62), Expect = 6.7 Identities = 18/54 (33%), Positives = 24/54 (44%) Frame = -1 Query: 406 SQGDEGPSSPVGVSCGRGGARAFPLPHSSGNHGGPMXXXXXXXXRPEGDRDVGE 245 S+GD+GP + G+ GR + P P G GP + DRD GE Sbjct: 77 SKGDQGPDTGPGLGPGRAPS---PKPTPLGPPPGPGPRRSARLGPLQADRDPGE 127
>PEX12_YEAST (Q04370) Peroxisome assembly protein 12 (Peroxin-12)| Length = 399 Score = 28.5 bits (62), Expect = 6.7 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%) Frame = -2 Query: 333 CPILQEIMEDPCVAADGYTYDRK-AIETWVSMKDKSPMTNLRL 208 CP+ ++ +++PCV GY AI V+ + P+TN +L Sbjct: 334 CPVCEKTVQNPCVLETGYVACYPCAISYLVNNEGHCPVTNKKL 376
>CO1A2_BOVIN (P02465) Collagen alpha-2(I) chain precursor| Length = 1364 Score = 28.5 bits (62), Expect = 6.7 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 2/42 (4%) Frame = -1 Query: 421 RRSQGSQGDEGPSSPVGV--SCGRGGARAFPLPHSSGNHGGP 302 R ++G +G+ GP P G + G G P P S GGP Sbjct: 739 RGTKGPKGENGPVGPTGPVGAAGPSGPNGPPGPAGSRGDGGP 780
>CPSF6_PONPY (Q5NVH8) Cleavage and polyadenylation specificity factor 6| Length = 552 Score = 28.5 bits (62), Expect = 6.7 Identities = 14/32 (43%), Positives = 15/32 (46%) Frame = +3 Query: 306 PP*FPEEWGRGNARAPPRPQLTPTGEEGPSSP 401 PP FP + PPRP L P G GP P Sbjct: 227 PPPFPA------GQTPPRPPLGPPGPPGPPGP 252
>CO1A1_RAT (P02454) Collagen alpha-1(I) chain precursor| Length = 1453 Score = 28.5 bits (62), Expect = 6.7 Identities = 17/40 (42%), Positives = 19/40 (47%), Gaps = 4/40 (10%) Frame = -1 Query: 409 GSQGDEGPSSPVGVSCGRGGARAFP----LPHSSGNHGGP 302 G G +GP P G G+ GAR P LP G GGP Sbjct: 441 GPAGVQGPPGPAGEE-GKRGARGEPGPSGLPGPPGERGGP 479 Score = 28.1 bits (61), Expect = 8.8 Identities = 13/37 (35%), Positives = 18/37 (48%) Frame = -1 Query: 412 QGSQGDEGPSSPVGVSCGRGGARAFPLPHSSGNHGGP 302 QG +G+ GP P G + G A P + G +G P Sbjct: 356 QGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAP 392
>HOL3_HOLDI (Q25055) Holotricin-3 precursor| Length = 104 Score = 28.5 bits (62), Expect = 6.7 Identities = 14/35 (40%), Positives = 16/35 (45%) Frame = -1 Query: 409 GSQGDEGPSSPVGVSCGRGGARAFPLPHSSGNHGG 305 G G G S G S G G +P H G+HGG Sbjct: 64 GGGGRGGGGSGGGGSPGHGAGGGYPGGHGGGHHGG 98
>CYB_PARTE (P15585) Cytochrome b| Length = 391 Score = 28.5 bits (62), Expect = 6.7 Identities = 12/51 (23%), Positives = 29/51 (56%), Gaps = 4/51 (7%) Frame = +3 Query: 15 FVYSHFDFLLRVHIHIFSMAAQHNTK----SIVVFAKTTSYHLIIMCFWIS 155 F++S+F L ++++++F + + + K S +VF + L++ C +S Sbjct: 80 FIFSYFHLLRKLYLNVFDLETEASWKSGVFSFLVFQVVVFFGLVLCCTHLS 130
>COBA1_HUMAN (P12107) Collagen alpha-1(XI) chain precursor| Length = 1806 Score = 28.1 bits (61), Expect = 8.8 Identities = 18/55 (32%), Positives = 22/55 (40%) Frame = -1 Query: 421 RRSQGSQGDEGPSSPVGVSCGRGGARAFPLPHSSGNHGGPMXXXXXXXXRPEGDR 257 R QG G +GP P G GG P +GN G P P+G+R Sbjct: 1227 RGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPP---GEAGVGGPKGER 1278
>CO4A2_ASCSU (P27393) Collagen alpha-2(IV) chain precursor| Length = 1763 Score = 28.1 bits (61), Expect = 8.8 Identities = 17/51 (33%), Positives = 20/51 (39%), Gaps = 1/51 (1%) Frame = -1 Query: 409 GSQGDEGPSSPVGVSCGRGGARAFP-LPHSSGNHGGPMXXXXXXXXRPEGD 260 G G GP P G GR GA P +P G+ GG +GD Sbjct: 500 GPPGPRGPQGPKGYD-GRDGAPGLPGIPGPKGDRGGTCAFCAHGAKGEKGD 549
>CO3A1_BOVIN (P04258) Collagen alpha-1(III) chain| Length = 1049 Score = 28.1 bits (61), Expect = 8.8 Identities = 21/61 (34%), Positives = 22/61 (36%), Gaps = 12/61 (19%) Frame = -1 Query: 409 GSQGDEGPSSPVGVSCGRG-----GARAFP-------LPHSSGNHGGPMXXXXXXXXRPE 266 G G GP P GV RG GA FP P S+GN G P P Sbjct: 690 GGSGPAGPPGPQGVKGERGSPGGPGAAGFPGGRGPPGPPGSNGNPGPPGSSGAPGKDGPP 749 Query: 265 G 263 G Sbjct: 750 G 750
>COBA1_MOUSE (Q61245) Collagen alpha-1(XI) chain precursor| Length = 1804 Score = 28.1 bits (61), Expect = 8.8 Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 3/40 (7%) Frame = -1 Query: 412 QGSQGDEGPSSPVGVSCGRGGARA---FPLPHSSGNHGGP 302 +G +G +GP PVG RG A A LP G G P Sbjct: 1042 KGGEGPQGPQGPVGSPGERGSAGAAGPIGLPGRPGPQGPP 1081
>CO6A2_HUMAN (P12110) Collagen alpha-2(VI) chain precursor| Length = 1019 Score = 28.1 bits (61), Expect = 8.8 Identities = 18/60 (30%), Positives = 23/60 (38%) Frame = -1 Query: 412 QGSQGDEGPSSPVGVSCGRGGARAFPLPHSSGNHGGPMXXXXXXXXRPEGDRDVGEHEGQ 233 +G+ G++G P G GRG P G G P P G R V EG+ Sbjct: 521 RGAPGEKGEPGPRGPEGGRGDFGLKGEPGRKGEKGEPADPGPPGEPGPRGPRGVPGPEGE 580
>CO4A1_DROME (P08120) Collagen alpha-1(IV) chain precursor| Length = 1775 Score = 28.1 bits (61), Expect = 8.8 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 7/42 (16%) Frame = -1 Query: 412 QGSQGDEGPSSPVGVSCGRGGARAFP-------LPHSSGNHG 308 QG +GD GP+ P+G G G+ +P LP SG G Sbjct: 865 QGEKGDRGPTGPIGFP-GADGSVGYPGDRGDAGLPGVSGRPG 905
>CAFF_RIFPA (P30754) Fibril-forming collagen alpha chain (Fragment)| Length = 1027 Score = 28.1 bits (61), Expect = 8.8 Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 9/47 (19%) Frame = -1 Query: 421 RRSQGSQGDEGPSSPVGVS-----CGRGGARAFP----LPHSSGNHG 308 R G QG++GP P G++ G GAR P P G HG Sbjct: 390 RGKDGKQGEQGPQGPQGLAGLQGRAGPPGARGEPGKNGAPGEPGAHG 436
>PEX10_PICAN (Q00940) Peroxisome assembly protein 10 (Peroxin-10) (Peroxisome| biogenesis factor 10) (Peroxisome assembly protein PER8) Length = 295 Score = 28.1 bits (61), Expect = 8.8 Identities = 11/49 (22%), Positives = 22/49 (44%) Frame = -2 Query: 333 CPILQEIMEDPCVAADGYTYDRKAIETWVSMKDKSPMTNLRLPSRSLIP 187 C + M+DP G+ + K + WV + + P+ ++ L+P Sbjct: 245 CMLCLSPMKDPSCGECGHVFCWKCVLDWVKERQECPLCRAKMRESQLLP 293 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 55,617,624 Number of Sequences: 219361 Number of extensions: 992834 Number of successful extensions: 4264 Number of sequences better than 10.0: 66 Number of HSP's better than 10.0 without gapping: 3285 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4208 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2278320915 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
