ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl21h12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GIMA2_HUMAN (Q9UG22) GTPase, IMAP family member 2 (Immunity-asso... 28 6.7
2AFP_ASPGI (P17737) Antifungal protein precursor 28 8.7
3ESM1_RAT (P97682) Endothelial cell-specific molecule 1 precursor... 28 8.7
4ESM1_MOUSE (Q9QYY7) Endothelial cell-specific molecule 1 precurs... 28 8.7

>GIMA2_HUMAN (Q9UG22) GTPase, IMAP family member 2 (Immunity-associated protein|
           2) (hIMAP2)
          Length = 337

 Score = 28.1 bits (61), Expect = 6.7
 Identities = 11/41 (26%), Positives = 24/41 (58%)
 Frame = -1

Query: 126 LHIVLQWSCLYNLPCPLHCITIYTLTLVYTCGLNILI*KKV 4
           L +++ W C+ +  C L C  ++++  ++ C L  +I KK+
Sbjct: 281 LRLIILWLCILHSMCNLFCCLLFSMCNLF-CSLLFIIPKKL 320



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>AFP_ASPGI (P17737) Antifungal protein precursor|
          Length = 94

 Score = 27.7 bits (60), Expect = 8.7
 Identities = 14/53 (26%), Positives = 24/53 (45%)
 Frame = +2

Query: 26  FNPQVYTRVNV*IVIQCKGQGRLYKQLHCNTMCKLCTRNQQTKKFNQYKSNCW 184
           +N + Y + N+     CK + +  K   C    K C R+    +F+ YK  C+
Sbjct: 46  YNGKCYKKDNI-----CKYKAQSGKTAICKCYVKKCPRDGAKCEFDSYKGKCY 93



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>ESM1_RAT (P97682) Endothelial cell-specific molecule 1 precursor (ESM-1|
           secretory protein) (ESM-1) (PG25)
          Length = 184

 Score = 27.7 bits (60), Expect = 8.7
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 126 LHIVLQWSCLYNLPCPLHC 70
           LH+ + WS  Y + CP HC
Sbjct: 14  LHLGMAWSAKYAVDCPEHC 32



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>ESM1_MOUSE (Q9QYY7) Endothelial cell-specific molecule 1 precursor (ESM-1|
           secretory protein) (ESM-1)
          Length = 184

 Score = 27.7 bits (60), Expect = 8.7
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 126 LHIVLQWSCLYNLPCPLHC 70
           LH+ + WS  Y + CP HC
Sbjct: 14  LHLGMAWSAKYAVDCPEHC 32


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,340,446
Number of Sequences: 219361
Number of extensions: 422609
Number of successful extensions: 890
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 890
length of database: 80,573,946
effective HSP length: 37
effective length of database: 72,457,589
effective search space used: 1738982136
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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