ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl21h09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AE017355.1| Bacillus thuringiensis serovar konkukian str. 97-... 38 2.8
2gb|AE017334.2| Bacillus anthracis str. 'Ames Ancestor', complete... 38 2.8
3gb|AE017225.1| Bacillus anthracis str. Sterne, complete genome 38 2.8
4gb|CP000001.1| Bacillus cereus E33L, complete genome 38 2.8
5emb|AL358176.22| Human DNA sequence from clone RP11-467I20 on ch... 38 2.8
6gb|AC079232.7| Homo sapiens BAC clone RP11-360H22 from 4, comple... 38 2.8
7gb|AE016879.1| Bacillus anthracis str. Ames, complete genome 38 2.8
8gb|AE017194.1| Bacillus cereus ATCC 10987, complete genome 38 2.8

>gb|AE017355.1| Bacillus thuringiensis serovar konkukian str. 97-27, complete genome
          Length = 5237682

 Score = 38.2 bits (19), Expect = 2.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 40      tttctaatactgacgtact 58
               |||||||||||||||||||
Sbjct: 1796246 tttctaatactgacgtact 1796228



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>gb|AE017334.2| Bacillus anthracis str. 'Ames Ancestor', complete genome
          Length = 5227419

 Score = 38.2 bits (19), Expect = 2.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 40      tttctaatactgacgtact 58
               |||||||||||||||||||
Sbjct: 1759355 tttctaatactgacgtact 1759337



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>gb|AE017225.1| Bacillus anthracis str. Sterne, complete genome
          Length = 5228663

 Score = 38.2 bits (19), Expect = 2.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 40      tttctaatactgacgtact 58
               |||||||||||||||||||
Sbjct: 1759300 tttctaatactgacgtact 1759282



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>gb|CP000001.1| Bacillus cereus E33L, complete genome
          Length = 5300915

 Score = 38.2 bits (19), Expect = 2.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 40      tttctaatactgacgtact 58
               |||||||||||||||||||
Sbjct: 1783843 tttctaatactgacgtact 1783825



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>emb|AL358176.22| Human DNA sequence from clone RP11-467I20 on chromosome 1 Contains the
              gene for protein related to DAN and cerberus (FLJ21195),
              two novel genes, a pseudogene similar to part of cytochrome
              c oxidase I (MTCOI1), a ribosomal protein S11 (RPS11)
              pseudogene, a ferredoxin pseudogene and a CpG island,
              complete sequence
          Length = 184311

 Score = 38.2 bits (19), Expect = 2.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 17     ttacattgggaagtaacag 35
              |||||||||||||||||||
Sbjct: 172364 ttacattgggaagtaacag 172382



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>gb|AC079232.7| Homo sapiens BAC clone RP11-360H22 from 4, complete sequence
          Length = 169281

 Score = 38.2 bits (19), Expect = 2.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 9     ctgcaaaattacattggga 27
             |||||||||||||||||||
Sbjct: 85722 ctgcaaaattacattggga 85704



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>gb|AE016879.1| Bacillus anthracis str. Ames, complete genome
          Length = 5227293

 Score = 38.2 bits (19), Expect = 2.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 40      tttctaatactgacgtact 58
               |||||||||||||||||||
Sbjct: 1759232 tttctaatactgacgtact 1759214



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>gb|AE017194.1| Bacillus cereus ATCC 10987, complete genome
          Length = 5224283

 Score = 38.2 bits (19), Expect = 2.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 40      tttctaatactgacgtact 58
               |||||||||||||||||||
Sbjct: 1890257 tttctaatactgacgtact 1890239


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 634,869
Number of Sequences: 3902068
Number of extensions: 634869
Number of successful extensions: 39516
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 39376
Number of HSP's gapped (non-prelim): 140
length of query: 71
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 50
effective length of database: 17,151,101,840
effective search space: 857555092000
effective search space used: 857555092000
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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