ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl21h08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|Z12021.1|GMCATALG G.max gene for catalase 40 1.6
2gb|AC004082.1|AC004082 Homo sapiens PAC clone RP5-897G10 from 7q... 40 1.6
3dbj|AK065005.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 1.6
4gb|AF035254.1|AF035254 Glycine max catalase (cat3) mRNA, complet... 40 1.6
5gb|AF035253.1|AF035253 Glycine max catalase (cat2) mRNA, complet... 40 1.6
6gb|AF035252.1|AF035252 Glycine max catalase (cat1) mRNA, complet... 40 1.6
7gb|BC053719.1| Mus musculus expressed sequence C87499, mRNA (cDN... 38 6.5
8dbj|AK135883.1| Mus musculus in vitro fertilized eggs cDNA, RIKE... 38 6.5
9gb|AC093805.3| Homo sapiens BAC clone RP11-326O9 from 4, complet... 38 6.5
10dbj|AK163216.1| Mus musculus 2 cells egg cDNA, RIKEN full-length... 38 6.5
11gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome 38 6.5
12gb|AC093142.2| Homo sapiens chromosome 3 clone RP11-301D8, compl... 38 6.5
13gb|AY110365.1| Zea mays CL38215_1 mRNA sequence 38 6.5
14ref|NM_198663.1| Mus musculus expressed sequence C87499 (C87499)... 38 6.5
15emb|AL772394.7| Mouse DNA sequence from clone RP23-67C1 on chrom... 38 6.5

>emb|Z12021.1|GMCATALG G.max gene for catalase
          Length = 4687

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 51   actctacatccaaacattgg 70
            ||||||||||||||||||||
Sbjct: 2829 actctacatccaaacattgg 2848



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>gb|AC004082.1|AC004082 Homo sapiens PAC clone RP5-897G10 from 7q11.23-q21.1, complete sequence
          Length = 98029

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 48    gttactctacatccaaacat 67
             ||||||||||||||||||||
Sbjct: 95634 gttactctacatccaaacat 95653



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>dbj|AK065005.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001E11, full
            insert sequence
          Length = 2911

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 1    gtattaacaaggaataaagt 20
            ||||||||||||||||||||
Sbjct: 2880 gtattaacaaggaataaagt 2861



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>gb|AF035254.1|AF035254 Glycine max catalase (cat3) mRNA, complete cds
          Length = 1715

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 51  actctacatccaaacattgg 70
           ||||||||||||||||||||
Sbjct: 809 actctacatccaaacattgg 828



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>gb|AF035253.1|AF035253 Glycine max catalase (cat2) mRNA, complete cds
          Length = 1831

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 51  actctacatccaaacattgg 70
           ||||||||||||||||||||
Sbjct: 841 actctacatccaaacattgg 860



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>gb|AF035252.1|AF035252 Glycine max catalase (cat1) mRNA, complete cds
          Length = 1733

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 51  actctacatccaaacattgg 70
           ||||||||||||||||||||
Sbjct: 856 actctacatccaaacattgg 875



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>gb|BC053719.1| Mus musculus expressed sequence C87499, mRNA (cDNA clone MGC:60825
           IMAGE:30053512), complete cds
          Length = 1851

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 62  aaacattggcaggtgacaactga 84
           ||||||| |||||||||||||||
Sbjct: 526 aaacatttgcaggtgacaactga 548



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>dbj|AK135883.1| Mus musculus in vitro fertilized eggs cDNA, RIKEN full-length
           enriched library, clone:7420432O12 product:weakly
           similar to PRAMEl6 [Mus musculus], full insert sequence
          Length = 1828

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 62  aaacattggcaggtgacaactga 84
           ||||||| |||||||||||||||
Sbjct: 525 aaacatttgcaggtgacaactga 547



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>gb|AC093805.3| Homo sapiens BAC clone RP11-326O9 from 4, complete sequence
          Length = 165538

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 50    tactctacatccaaacatt 68
             |||||||||||||||||||
Sbjct: 69307 tactctacatccaaacatt 69289



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>dbj|AK163216.1| Mus musculus 2 cells egg cDNA, RIKEN full-length enriched library,
           clone:B020002E16 product:hypothetical protein, full
           insert sequence
          Length = 1523

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 62  aaacattggcaggtgacaactga 84
           ||||||| |||||||||||||||
Sbjct: 216 aaacatttgcaggtgacaactga 238



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>gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome
          Length = 5751492

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 16      aaagttccaggcacaacac 34
               |||||||||||||||||||
Sbjct: 1292800 aaagttccaggcacaacac 1292818



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>gb|AC093142.2| Homo sapiens chromosome 3 clone RP11-301D8, complete sequence
          Length = 210592

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 44     ctcagttactctacatcca 62
              |||||||||||||||||||
Sbjct: 142626 ctcagttactctacatcca 142608



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>gb|AY110365.1| Zea mays CL38215_1 mRNA sequence
          Length = 607

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                     
Query: 1  gtattaacaaggaataaagttccaggc 27
          |||||||||||| |||||||| |||||
Sbjct: 25 gtattaacaaggcataaagttacaggc 51



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>ref|NM_198663.1| Mus musculus expressed sequence C87499 (C87499), mRNA
          Length = 1851

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 62  aaacattggcaggtgacaactga 84
           ||||||| |||||||||||||||
Sbjct: 526 aaacatttgcaggtgacaactga 548



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>emb|AL772394.7| Mouse DNA sequence from clone RP23-67C1 on chromosome 4, complete
             sequence
          Length = 89437

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 62    aaacattggcaggtgacaactga 84
             ||||||| |||||||||||||||
Sbjct: 76221 aaacatttgcaggtgacaactga 76199


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 753,102
Number of Sequences: 3902068
Number of extensions: 753102
Number of successful extensions: 48265
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 48233
Number of HSP's gapped (non-prelim): 32
length of query: 137
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 116
effective length of database: 17,151,101,840
effective search space: 1989527813440
effective search space used: 1989527813440
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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