ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl21h03 |
|---|---|
| Clone Library Name | barley_pub |
>LOX1_HORVU (P29114) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 68.2 bits (165), Expect = 5e-12 Identities = 31/35 (88%), Positives = 32/35 (91%) Frame = -2 Query: 364 GPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 260 GPAKFPYMLLYPNTSDH G A GLTA+GIPNSISI Sbjct: 828 GPAKFPYMLLYPNTSDHKGAAAGLTAKGIPNSISI 862
>LOX3_ORYSA (Q7G794) Putative lipoxygenase 3 (EC 1.13.11.12)| Length = 866 Score = 63.9 bits (154), Expect = 9e-11 Identities = 29/35 (82%), Positives = 32/35 (91%) Frame = -2 Query: 364 GPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 260 GPA+FPYMLLYPNTSD TG A G+TA+GIPNSISI Sbjct: 832 GPAEFPYMLLYPNTSDVTGAAAGITAKGIPNSISI 866
>LOX1_ORYSA (Q76I22) Lipoxygenase 1 (EC 1.13.11.12) (9-lipoxygenase) (r9-LOX1)| Length = 863 Score = 61.6 bits (148), Expect = 4e-10 Identities = 27/35 (77%), Positives = 31/35 (88%) Frame = -2 Query: 364 GPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 260 GPA FPY L++PNTSD+ G AEG+TARGIPNSISI Sbjct: 829 GPANFPYTLMFPNTSDNKGAAEGITARGIPNSISI 863
>LOX2_ORYSA (P29250) Lipoxygenase 2 (EC 1.13.11.12) (Lipoxygenase L-2)| Length = 870 Score = 58.2 bits (139), Expect = 5e-09 Identities = 27/35 (77%), Positives = 28/35 (80%) Frame = -2 Query: 364 GPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 260 GP FPY LLYPNTSD G A GL+ARGIPNSISI Sbjct: 836 GPTNFPYTLLYPNTSDLKGDAAGLSARGIPNSISI 870
>LOX4_ORYSA (Q53RB0) Probable lipoxygenase 4 (EC 1.13.11.12)| Length = 877 Score = 54.3 bits (129), Expect = 7e-08 Identities = 27/36 (75%), Positives = 29/36 (80%), Gaps = 1/36 (2%) Frame = -2 Query: 364 GPAKFPYMLLYPNTSDHTGQ-AEGLTARGIPNSISI 260 GP K PYMLLYPNTSD T + +GLTA GIPNSISI Sbjct: 842 GPVKMPYMLLYPNTSDVTKEKGQGLTAMGIPNSISI 877
>LOX4_SOYBN (P38417) Lipoxygenase-4 (EC 1.13.11.12) (L-4) (VSP94)| Length = 853 Score = 44.7 bits (104), Expect = 6e-05 Identities = 23/35 (65%), Positives = 25/35 (71%) Frame = -2 Query: 364 GPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 260 GPAK PY LLYP++ EGLT RGIPNSISI Sbjct: 825 GPAKMPYTLLYPSSE------EGLTFRGIPNSISI 853
>LOX1_LENCU (P38414) Lipoxygenase (EC 1.13.11.12)| Length = 866 Score = 43.9 bits (102), Expect = 1e-04 Identities = 22/35 (62%), Positives = 24/35 (68%) Frame = -2 Query: 364 GPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 260 GP K PY LLYP++ EGLT RGIPNSISI Sbjct: 838 GPVKMPYTLLYPSSE------EGLTCRGIPNSISI 866
>LOX2_SOYBN (P09439) Seed lipoxygenase-2 (EC 1.13.11.12) (L-2)| Length = 865 Score = 42.0 bits (97), Expect = 4e-04 Identities = 21/35 (60%), Positives = 24/35 (68%) Frame = -2 Query: 364 GPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 260 GP + PY LL+PN+ EGLT RGIPNSISI Sbjct: 838 GPVQLPYTLLHPNS-------EGLTCRGIPNSISI 865
>LOX3_PEA (P09918) Seed lipoxygenase-3 (EC 1.13.11.12)| Length = 861 Score = 41.6 bits (96), Expect = 5e-04 Identities = 21/35 (60%), Positives = 24/35 (68%) Frame = -2 Query: 364 GPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 260 GP + PY LLYP++ EGLT RGIPNSISI Sbjct: 833 GPVEMPYTLLYPSSK------EGLTFRGIPNSISI 861
>LOX1_SOYBN (P08170) Seed lipoxygenase-1 (EC 1.13.11.12) (L-1)| Length = 839 Score = 41.6 bits (96), Expect = 5e-04 Identities = 21/35 (60%), Positives = 24/35 (68%) Frame = -2 Query: 364 GPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 260 GP + PY LLYP++ EGLT RGIPNSISI Sbjct: 811 GPVQLPYTLLYPSSE------EGLTFRGIPNSISI 839
>LOXA_PHAVU (P27480) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 40.4 bits (93), Expect = 0.001 Identities = 21/35 (60%), Positives = 22/35 (62%) Frame = -2 Query: 364 GPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 260 GP K PY +L P D EGLT RGIPNSISI Sbjct: 833 GPVKMPYTVLLPTCED-----EGLTFRGIPNSISI 862
>LOX2_PEA (P14856) Seed lipoxygenase-2 (EC 1.13.11.12)| Length = 864 Score = 39.7 bits (91), Expect = 0.002 Identities = 20/35 (57%), Positives = 24/35 (68%) Frame = -2 Query: 364 GPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 260 GP + PY LL+P++ EGLT RGIPNSISI Sbjct: 836 GPVQLPYTLLHPSSK------EGLTFRGIPNSISI 864
>LOX3_SOYBN (P09186) Seed lipoxygenase-3 (EC 1.13.11.12) (L-3)| Length = 857 Score = 38.5 bits (88), Expect = 0.004 Identities = 20/35 (57%), Positives = 23/35 (65%) Frame = -2 Query: 364 GPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 260 GP + PY LL P++ EGLT RGIPNSISI Sbjct: 829 GPVQMPYTLLLPSSK------EGLTFRGIPNSISI 857
>LOXX_SOYBN (P24095) Seed lipoxygenase (EC 1.13.11.12)| Length = 864 Score = 38.5 bits (88), Expect = 0.004 Identities = 20/36 (55%), Positives = 22/36 (61%) Frame = -2 Query: 367 TGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 260 TGP + PY LL H EGLT +GIPNSISI Sbjct: 835 TGPVQLPYTLL------HRSSEEGLTFKGIPNSISI 864
>LOXB_LYCES (P38416) Lipoxygenase B (EC 1.13.11.12)| Length = 859 Score = 38.5 bits (88), Expect = 0.004 Identities = 18/36 (50%), Positives = 23/36 (63%) Frame = -2 Query: 367 TGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 260 +GP PY LL+P + EGLT +GIPNS+SI Sbjct: 830 SGPVNVPYTLLFPTSE------EGLTGKGIPNSVSI 859
>LOXA_LYCES (P38415) Lipoxygenase A (EC 1.13.11.12)| Length = 860 Score = 37.4 bits (85), Expect = 0.009 Identities = 18/36 (50%), Positives = 22/36 (61%) Frame = -2 Query: 367 TGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 260 TGP PY LL+P + GLT +GIPNS+SI Sbjct: 831 TGPVNAPYTLLFPTSEG------GLTGKGIPNSVSI 860
>LOX1_ARATH (Q06327) Lipoxygenase 1 (EC 1.13.11.12)| Length = 859 Score = 36.6 bits (83), Expect = 0.015 Identities = 18/36 (50%), Positives = 23/36 (63%) Frame = -2 Query: 367 TGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 260 TG K PY LL+P++ G+T RGIPNS+SI Sbjct: 830 TGLVKMPYTLLFPSSEG------GVTGRGIPNSVSI 859
>LOX1_SOLTU (P37831) Lipoxygenase 1 (EC 1.13.11.12)| Length = 861 Score = 35.8 bits (81), Expect = 0.026 Identities = 17/36 (47%), Positives = 22/36 (61%) Frame = -2 Query: 367 TGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 260 +GP PY LL+P + GLT +GIPNS+SI Sbjct: 832 SGPVNAPYTLLFPTSEG------GLTGKGIPNSVSI 861
>LOXB_PHAVU (P27481) Lipoxygenase (EC 1.13.11.12) (Fragment)| Length = 741 Score = 35.4 bits (80), Expect = 0.034 Identities = 18/30 (60%), Positives = 20/30 (66%) Frame = -2 Query: 367 TGPAKFPYMLLYPNTSDHTGQAEGLTARGI 278 TGPAK PY LLYP++ EGLT RGI Sbjct: 718 TGPAKMPYTLLYPSSE------EGLTFRGI 741
>SYP_MYCTU (O05814) Prolyl-tRNA synthetase (EC 6.1.1.15) (Proline--tRNA| ligase) (ProRS) Length = 582 Score = 31.2 bits (69), Expect = 0.64 Identities = 20/40 (50%), Positives = 23/40 (57%) Frame = +2 Query: 239 TTDVLRSDGYAVRDAPGGEPLGLSRVVGGVWVEQHVWELG 358 T DVL DG VR G +G+SR+V V EQH ELG Sbjct: 438 TADVLGEDGKPVRLTMGSYGIGVSRLV-AVVAEQHHDELG 476
>SEPP1_PONPY (Q5R8W9) Selenoprotein P precursor (SeP)| Length = 381 Score = 30.4 bits (67), Expect = 1.1 Identities = 15/30 (50%), Positives = 16/30 (53%) Frame = -1 Query: 362 AGQVPIHAALPKHLRPHGTGRGAHRQGHPE 273 A P H A P L H +G HRQGHPE Sbjct: 231 APDAPTHPA-PPGLHHHHKHKGQHRQGHPE 259
>SEPP1_HUMAN (P49908) Selenoprotein P precursor (SeP)| Length = 381 Score = 30.4 bits (67), Expect = 1.1 Identities = 15/30 (50%), Positives = 16/30 (53%) Frame = -1 Query: 362 AGQVPIHAALPKHLRPHGTGRGAHRQGHPE 273 A P H A P L H +G HRQGHPE Sbjct: 231 APNAPTHPA-PPGLHHHHKHKGQHRQGHPE 259
>LOX6_ORYSA (Q8H016) Probable lipoxygenase 6 (EC 1.13.11.12)| Length = 918 Score = 30.0 bits (66), Expect = 1.4 Identities = 16/35 (45%), Positives = 20/35 (57%) Frame = -2 Query: 364 GPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 260 G PY LL P++ G+T RG+PNSISI Sbjct: 890 GAGVLPYELLAPSSPP------GVTCRGVPNSISI 918
>FRIZ3_DROME (O77438) Protein frizzled-3 precursor (dFz3)| Length = 581 Score = 28.9 bits (63), Expect = 3.2 Identities = 24/72 (33%), Positives = 30/72 (41%), Gaps = 5/72 (6%) Frame = -2 Query: 343 MLLYPNTSDHTGQ--AEGLTARGIPNSISI*SEHVRR---RDLMLLCYPCLLTPELACVC 179 M PN + HT Q AE A+ +P S S R L LC P + P AC Sbjct: 55 MTALPNLAGHTNQLEAELQIAKLVPLIESGCSRRARFLLCSSLFPLCTPDVPRPVAACKL 114 Query: 178 VCDRELCRCMNN 143 +C+ CM N Sbjct: 115 LCETVRGECMEN 126
>LOX23_HORVU (Q8GSM2) Lipoxygenase 2.3, chloroplast precursor (EC 1.13.11.12)| (LOX2:Hv:3) Length = 896 Score = 28.5 bits (62), Expect = 4.2 Identities = 17/35 (48%), Positives = 19/35 (54%) Frame = -2 Query: 364 GPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 260 G PY LL P + G+T RGIPNSISI Sbjct: 868 GAGIVPYELLKPFSEP------GVTGRGIPNSISI 896
>LOX5_ORYSA (Q7XV13) Putative lipoxygenase 5 (EC 1.13.11.12)| Length = 899 Score = 28.5 bits (62), Expect = 4.2 Identities = 13/35 (37%), Positives = 20/35 (57%) Frame = -2 Query: 364 GPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 260 G PY L+ P++ G+T RG+PNS++I Sbjct: 871 GAGVLPYELMAPSSGP------GITCRGVPNSVTI 899
>CEMA_SYNY3 (P72771) CemA-like protein sll1685| Length = 393 Score = 28.1 bits (61), Expect = 5.5 Identities = 10/27 (37%), Positives = 17/27 (62%) Frame = +1 Query: 4 GTPHHRIHYWAKQGIFSAHDDALTGSQ 84 G+P+HR H+W + +A D+A +Q Sbjct: 8 GSPNHRFHHWLVRQAIAALDNAQVSAQ 34
>ALR1_SALTY (P0A1A3) Alanine racemase, biosynthetic (EC 5.1.1.1)| Length = 359 Score = 28.1 bits (61), Expect = 5.5 Identities = 16/36 (44%), Positives = 18/36 (50%) Frame = +2 Query: 251 LRSDGYAVRDAPGGEPLGLSRVVGGVWVEQHVWELG 358 L S AVRD GEP+G GG WV + LG Sbjct: 237 LTSSLIAVRDHKAGEPVG----YGGTWVSERDTRLG 268
>ALR1_SALTI (P0A1A4) Alanine racemase, biosynthetic (EC 5.1.1.1)| Length = 359 Score = 28.1 bits (61), Expect = 5.5 Identities = 16/36 (44%), Positives = 18/36 (50%) Frame = +2 Query: 251 LRSDGYAVRDAPGGEPLGLSRVVGGVWVEQHVWELG 358 L S AVRD GEP+G GG WV + LG Sbjct: 237 LTSSLIAVRDHKAGEPVG----YGGTWVSERDTRLG 268
>CB024_HUMAN (Q9BV87) Protein C2orf24| Length = 410 Score = 27.7 bits (60), Expect = 7.1 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 5/65 (7%) Frame = -2 Query: 271 SISI*SEHVRRRDLMLLCYPCLLTPELACVCVCDRELC-----RCMNN*GNKGACATGLI 107 ++++ S V + L L C P P+L C E C +C+ + N +C G + Sbjct: 244 ALAVASVAVIHQSLGLSCTPTPGPPDLGLTSRCLLEPCIPSVPQCLPSPANVSSCLEGSM 303 Query: 106 GMRKL 92 G+R L Sbjct: 304 GLRSL 308
>GALR1_HUMAN (P47211) Galanin receptor type 1 (GAL1-R) (GALR1)| Length = 349 Score = 27.3 bits (59), Expect = 9.3 Identities = 9/14 (64%), Positives = 11/14 (78%) Frame = +1 Query: 10 PHHRIHYWAKQGIF 51 PHH IH WA+ G+F Sbjct: 262 PHHIIHLWAEFGVF 275
>ARNT_RAT (P41739) Aryl hydrocarbon receptor nuclear translocator (ARNT| protein) (Dioxin receptor, nuclear translocator) (Hypoxia-inducible factor 1 beta) (HIF-1 beta) Length = 800 Score = 27.3 bits (59), Expect = 9.3 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 2/31 (6%) Frame = -1 Query: 293 HRQGHPEQHIHLI*ARPSSRPHAF--VLSLL 207 HR EQH+ A+PSS+P F +LS+L Sbjct: 747 HRSSSNEQHVQPTSAQPSSQPEVFQEMLSML 777
>KPTA_BURS3 (Q395F2) Probable RNA 2'-phosphotransferase (EC 2.7.-.-)| Length = 194 Score = 27.3 bits (59), Expect = 9.3 Identities = 13/27 (48%), Positives = 17/27 (62%) Frame = +2 Query: 92 ELPHADQTRRARTLIALIIHAPAQLSV 172 ELP D TR +RTL L+ HAP + + Sbjct: 7 ELPAPDATRISRTLSYLLRHAPQTIGL 33 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 59,756,567 Number of Sequences: 219361 Number of extensions: 1180245 Number of successful extensions: 3069 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 2941 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3048 length of database: 80,573,946 effective HSP length: 98 effective length of database: 59,076,568 effective search space used: 1417837632 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
