Clone Name | rbastl21h01 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK070862.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023073E23, full insert sequence Length = 3546 Score = 163 bits (82), Expect = 5e-37 Identities = 130/146 (89%) Strand = Plus / Minus Query: 248 ccaattcaatttaatggcccaaaatctgtgagatacgtcgttcagcatccattggtatct 307 ||||||| ||||||||||||||||||| ||||| |||||||||||||||||||| |||| Sbjct: 3272 ccaattcgttttaatggcccaaaatctgagagatgcgtcgttcagcatccattggcatct 3213 Query: 308 ctctaccaggtacattgacctttagtatgcttaagtattcttttgcagaaaataaatatt 367 |||| ||||| || |||||||||| | ||| |||||||||||||||||||||||||||| Sbjct: 3212 ctcttccaggaacgttgacctttaacacgctcaagtattcttttgcagaaaataaatatt 3153 Query: 368 cctgttcagcaatgaacccaagcaaa 393 | ||||| ||||| || ||||||||| Sbjct: 3152 catgttctgcaataaatccaagcaaa 3127
>ref|XM_481557.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1278 Score = 159 bits (80), Expect = 8e-36 Identities = 122/136 (89%) Strand = Plus / Minus Query: 258 ttaatggcccaaaatctgtgagatacgtcgttcagcatccattggtatctctctaccagg 317 |||||||||||||||||| ||||| |||||||||||||||||||| |||||||| ||||| Sbjct: 1278 ttaatggcccaaaatctgagagatgcgtcgttcagcatccattggcatctctcttccagg 1219 Query: 318 tacattgacctttagtatgcttaagtattcttttgcagaaaataaatattcctgttcagc 377 || |||||||||| | ||| ||||||||||||||||||||||||||||| ||||| || Sbjct: 1218 aacgttgacctttaacacgctcaagtattcttttgcagaaaataaatattcatgttctgc 1159 Query: 378 aatgaacccaagcaaa 393 ||| || ||||||||| Sbjct: 1158 aataaatccaagcaaa 1143
>gb|AY224584.1| Oryza sativa (japonica cultivar-group) isolate 30858 unknown mRNA Length = 1704 Score = 159 bits (80), Expect = 8e-36 Identities = 122/136 (89%) Strand = Plus / Minus Query: 258 ttaatggcccaaaatctgtgagatacgtcgttcagcatccattggtatctctctaccagg 317 |||||||||||||||||| ||||| |||||||||||||||||||| |||||||| ||||| Sbjct: 1704 ttaatggcccaaaatctgagagatgcgtcgttcagcatccattggcatctctcttccagg 1645 Query: 318 tacattgacctttagtatgcttaagtattcttttgcagaaaataaatattcctgttcagc 377 || |||||||||| | ||| ||||||||||||||||||||||||||||| ||||| || Sbjct: 1644 aacgttgacctttaacacgctcaagtattcttttgcagaaaataaatattcatgttctgc 1585 Query: 378 aatgaacccaagcaaa 393 ||| || ||||||||| Sbjct: 1584 aataaatccaagcaaa 1569
>gb|AY107186.1| Zea mays PCO133868 mRNA sequence Length = 1187 Score = 113 bits (57), Expect = 4e-22 Identities = 111/129 (86%) Strand = Plus / Minus Query: 265 cccaaaatctgtgagatacgtcgttcagcatccattggtatctctctaccaggtacattg 324 ||||||||||||||||| ||||||||||||||| ||||| |||||||| || |||||| Sbjct: 880 cccaaaatctgtgagatgcgtcgttcagcatccgcaggtatttctctacccggcacattg 821 Query: 325 acctttagtatgcttaagtattcttttgcagaaaataaatattcctgttcagcaatgaac 384 |||||||| | || | ||||||||| |||||||| |||||||| ||||| || ||||| Sbjct: 820 acctttagaacactcaggtattctttagcagaaaacaaatattcatgttctgcgatgaat 761 Query: 385 ccaagcaaa 393 ||||||||| Sbjct: 760 ccaagcaaa 752
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 103 bits (52), Expect = 4e-19 Identities = 76/84 (90%) Strand = Plus / Plus Query: 248 ccaattcaatttaatggcccaaaatctgtgagatacgtcgttcagcatccattggtatct 307 ||||||| ||||||||||||||||||| ||||| |||||||||||||||||||| |||| Sbjct: 13733517 ccaattcgttttaatggcccaaaatctgagagatgcgtcgttcagcatccattggcatct 13733576 Query: 308 ctctaccaggtacattgaccttta 331 |||| ||||| || |||||||||| Sbjct: 13733577 ctcttccaggaacgttgaccttta 13733600 Score = 63.9 bits (32), Expect = 4e-07 Identities = 44/48 (91%) Strand = Plus / Plus Query: 346 tcttttgcagaaaataaatattcctgttcagcaatgaacccaagcaaa 393 ||||||||||||||||||||||| ||||| ||||| || ||||||||| Sbjct: 13733700 tcttttgcagaaaataaatattcatgttctgcaataaatccaagcaaa 13733747
>dbj|AP005498.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0406D01 Length = 163932 Score = 103 bits (52), Expect = 4e-19 Identities = 76/84 (90%) Strand = Plus / Plus Query: 248 ccaattcaatttaatggcccaaaatctgtgagatacgtcgttcagcatccattggtatct 307 ||||||| ||||||||||||||||||| ||||| |||||||||||||||||||| |||| Sbjct: 47586 ccaattcgttttaatggcccaaaatctgagagatgcgtcgttcagcatccattggcatct 47645 Query: 308 ctctaccaggtacattgaccttta 331 |||| ||||| || |||||||||| Sbjct: 47646 ctcttccaggaacgttgaccttta 47669 Score = 63.9 bits (32), Expect = 4e-07 Identities = 44/48 (91%) Strand = Plus / Plus Query: 346 tcttttgcagaaaataaatattcctgttcagcaatgaacccaagcaaa 393 ||||||||||||||||||||||| ||||| ||||| || ||||||||| Sbjct: 47769 tcttttgcagaaaataaatattcatgttctgcaataaatccaagcaaa 47816
>emb|BX511019.6| Zebrafish DNA sequence from clone CH211-89O9 in linkage group 1, complete sequence Length = 180744 Score = 46.1 bits (23), Expect = 0.085 Identities = 23/23 (100%) Strand = Plus / Plus Query: 149 aaaaccaaacagaaataacaaaa 171 ||||||||||||||||||||||| Sbjct: 7326 aaaaccaaacagaaataacaaaa 7348
>emb|AL445526.9| Human DNA sequence from clone RP11-32I2 on chromosome 9 Contains a pseudogene similar to part of tumor necrosis factor, alpha-induced protein 1 (endothelial) (TNFAIP1) (EDP1), complete sequence Length = 127029 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Plus Query: 119 ttacctacctatatgtagacat 140 |||||||||||||||||||||| Sbjct: 113190 ttacctacctatatgtagacat 113211
>gb|AC102117.13| Mus musculus chromosome 7, clone RP23-154P9, complete sequence Length = 196717 Score = 44.1 bits (22), Expect = 0.34 Identities = 25/26 (96%) Strand = Plus / Plus Query: 141 caaaagaaaaaaccaaacagaaataa 166 ||||| |||||||||||||||||||| Sbjct: 100755 caaaacaaaaaaccaaacagaaataa 100780
>gb|AE008692.1| Zymomonas mobilis subsp. mobilis ZM4, complete genome Length = 2056416 Score = 44.1 bits (22), Expect = 0.34 Identities = 25/26 (96%) Strand = Plus / Minus Query: 147 aaaaaaccaaacagaaataacaaaat 172 |||||| ||||||||||||||||||| Sbjct: 1231254 aaaaaaacaaacagaaataacaaaat 1231229
>emb|AL732475.6| Mouse DNA sequence from clone RP23-202H24 on chromosome X, complete sequence Length = 165720 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Minus Query: 149 aaaaccaaacagaaataacaaa 170 |||||||||||||||||||||| Sbjct: 137459 aaaaccaaacagaaataacaaa 137438
>gb|AC100269.7| Mus musculus chromosome 5, clone RP23-67B9, complete sequence Length = 237273 Score = 42.1 bits (21), Expect = 1.3 Identities = 27/29 (93%) Strand = Plus / Plus Query: 148 aaaaaccaaacagaaataacaaaattaac 176 |||||| ||||||||||||||||| |||| Sbjct: 187808 aaaaacaaaacagaaataacaaaactaac 187836
>gb|AC103388.6| Mus musculus chromosome 7, clone RP24-403B15, complete sequence Length = 164394 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 21 aaattacacccaaaatatcacacat 45 |||||||||||||||| |||||||| Sbjct: 41148 aaattacacccaaaatttcacacat 41124
>gb|AC102676.16| Mus musculus chromosome 14, clone RP23-266L19, complete sequence Length = 190298 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 345 ttcttttgcagaaaataaata 365 ||||||||||||||||||||| Sbjct: 8068 ttcttttgcagaaaataaata 8088
>ref|XM_534392.2| PREDICTED: Canis familiaris similar to Nuclear receptor coactivator 6 (Amplified in breast cancer-3 protein) (Cancer-amplified transcriptional coactivator ASC-2) (Activating signal cointegrator-2) (ASC-2) (Peroxisome proliferator-activated receptor-interacting protein) (PPAR-..., transcript variant 1 (LOC477202), mRNA Length = 6872 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 39 cacacatttacaaggatcaag 59 ||||||||||||||||||||| Sbjct: 6368 cacacatttacaaggatcaag 6348
>gb|AC131691.4| Mus musculus BAC clone RP23-388P2 from chromosome 16, complete sequence Length = 202652 Score = 42.1 bits (21), Expect = 1.3 Identities = 27/29 (93%) Strand = Plus / Plus Query: 142 aaaagaaaaaaccaaacagaaataacaaa 170 |||||||||| |||||||||||| ||||| Sbjct: 133245 aaaagaaaaatccaaacagaaattacaaa 133273
>gb|AC093449.19| Mus musculus strain 129/Sv clone ct7-328a16 map X, complete sequence Length = 153728 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 173 taactacagctacaaagaaag 193 ||||||||||||||||||||| Sbjct: 44419 taactacagctacaaagaaag 44439
>emb|AL590678.3| Human DNA sequence from clone RP11-141E7 on chromosome 6, complete sequence Length = 149849 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 353 cagaaaataaatattcctgtt 373 ||||||||||||||||||||| Sbjct: 145180 cagaaaataaatattcctgtt 145160
>gb|AC115007.6| Mus musculus chromosome 5, clone RP24-188P11, complete sequence Length = 155084 Score = 42.1 bits (21), Expect = 1.3 Identities = 27/29 (93%) Strand = Plus / Plus Query: 148 aaaaaccaaacagaaataacaaaattaac 176 |||||| ||||||||||||||||| |||| Sbjct: 75553 aaaaacaaaacagaaataacaaaactaac 75581
>dbj|AK053908.1| Mus musculus 0 day neonate eyeball cDNA, RIKEN full-length enriched library, clone:E130320C01 product:unclassifiable, full insert sequence Length = 2644 Score = 42.1 bits (21), Expect = 1.3 Identities = 27/29 (93%) Strand = Plus / Plus Query: 142 aaaagaaaaaaccaaacagaaataacaaa 170 |||||||||| |||||||||||| ||||| Sbjct: 1225 aaaagaaaaatccaaacagaaattacaaa 1253
>ref|XM_394589.2| PREDICTED: Apis mellifera similar to ENSANGP00000002826 (LOC411115), mRNA Length = 17253 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 9 ctgattttgttaaaattacac 29 ||||||||||||||||||||| Sbjct: 2330 ctgattttgttaaaattacac 2350
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 147 aaaaaaccaaacagaaataacaaaa 171 ||||| ||||||||||||||||||| Sbjct: 26566906 aaaaatccaaacagaaataacaaaa 26566882
>gb|AC116098.3| Homo sapiens chromosome 3 clone CTD-2329B17, complete sequence Length = 120591 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 197 aggaagatactgtgagacatc 217 ||||||||||||||||||||| Sbjct: 87962 aggaagatactgtgagacatc 87942
>gb|AC062022.6| Homo sapiens BAC clone RP11-220I15 from 2, complete sequence Length = 151006 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 166 acaaaattaactacagctaca 186 ||||||||||||||||||||| Sbjct: 112099 acaaaattaactacagctaca 112079
>gb|AC015542.17| Homo sapiens 3 BAC RP11-38B6 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 155150 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 197 aggaagatactgtgagacatc 217 ||||||||||||||||||||| Sbjct: 146837 aggaagatactgtgagacatc 146857
>dbj|AP003212.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0049H05 Length = 161934 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 147 aaaaaaccaaacagaaataacaaaa 171 ||||| ||||||||||||||||||| Sbjct: 40620 aaaaatccaaacagaaataacaaaa 40596
>emb|AJ550897.1|TRU550897 Takifugu rubripes ptr1 gene for parathyroid hormone receptor 1, exons 1-13 Length = 31774 Score = 42.1 bits (21), Expect = 1.3 Identities = 27/29 (93%) Strand = Plus / Plus Query: 147 aaaaaaccaaacagaaataacaaaattaa 175 ||||||||||| ||||||||| ||||||| Sbjct: 29806 aaaaaaccaaaaagaaataaccaaattaa 29834
>emb|AL672039.9| Mouse DNA sequence from clone RP23-295F17 on chromosome X, complete sequence Length = 197632 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 173 taactacagctacaaagaaag 193 ||||||||||||||||||||| Sbjct: 46849 taactacagctacaaagaaag 46869
>ref|NM_123438.2| Arabidopsis thaliana AGP24 AT5G40730 (AGP24) mRNA, complete cds Length = 446 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 138 catcaaaagaaaaaaccaaa 157 |||||||||||||||||||| Sbjct: 28 catcaaaagaaaaaaccaaa 47
>gb|AC109157.10| Mus musculus chromosome 7, clone RP24-169M16, complete sequence Length = 164968 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 148 aaaaaccaaacagaaataacaaaa 171 |||||||||||||||| ||||||| Sbjct: 44913 aaaaaccaaacagaaacaacaaaa 44936
>gb|AC167129.5| Mus musculus chromosome 5, clone RP23-397D16, complete sequence Length = 197551 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 70 ccattcaaaataccacaaat 89 |||||||||||||||||||| Sbjct: 29805 ccattcaaaataccacaaat 29786
>ref|NM_007332.1| Homo sapiens transient receptor potential cation channel, subfamily A, member 1 (TRPA1), mRNA Length = 5190 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 133 gtagacatcaaaagaaaaaa 152 |||||||||||||||||||| Sbjct: 4328 gtagacatcaaaagaaaaaa 4309
>gb|AY672745.1| Allium sativum LEAFY splice variant 2 mRNA, partial cds, alternatively spliced Length = 570 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 144 aagaaaaaaccaaacagaaa 163 |||||||||||||||||||| Sbjct: 301 aagaaaaaaccaaacagaaa 320
>gb|AY563104.1| Allium sativum floral meristem identity control protein gene, partial cds Length = 682 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 144 aagaaaaaaccaaacagaaa 163 |||||||||||||||||||| Sbjct: 321 aagaaaaaaccaaacagaaa 340
>gb|AY563105.1| Allium sativum LEAFY spliced variant 1 mRNA, partial cds Length = 506 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 144 aagaaaaaaccaaacagaaa 163 |||||||||||||||||||| Sbjct: 238 aagaaaaaaccaaacagaaa 257
>gb|AC145132.2| Homo sapiens chromosome 5 clone RP11-1113N2, complete sequence Length = 150263 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 354 agaaaataaatattcctgtt 373 |||||||||||||||||||| Sbjct: 86070 agaaaataaatattcctgtt 86051
>emb|Z69302.1|CEF40F8 Caenorhabditis elegans Cosmid F40F8, complete sequence Length = 26497 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 4 gagtactgattttgttaaaa 23 |||||||||||||||||||| Sbjct: 10117 gagtactgattttgttaaaa 10136
>ref|XM_647361.1| Entamoeba histolytica HM-1:IMSS pre-mRNA splicing factor PRP17, putative (117.t00032) partial mRNA Length = 1203 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 155 aaacagaaataacaaaatta 174 |||||||||||||||||||| Sbjct: 520 aaacagaaataacaaaatta 501
>gb|AC145145.2| Homo sapiens chromosome 5 clone RP11-14E21, complete sequence Length = 174962 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 354 agaaaataaatattcctgtt 373 |||||||||||||||||||| Sbjct: 148583 agaaaataaatattcctgtt 148564
>gb|AC113064.8| Mus musculus chromosome 5, clone RP23-262H7, complete sequence Length = 176176 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 70 ccattcaaaataccacaaat 89 |||||||||||||||||||| Sbjct: 133828 ccattcaaaataccacaaat 133809
>ref|XM_758525.1| Theileria parva strain Muguga chromosome 3 hypothetical protein (TP03_0590) partial mRNA Length = 4743 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 36 tatcacacatttacaaggatcaag 59 |||||||||||||||||| ||||| Sbjct: 2234 tatcacacatttacaaggctcaag 2257
>gb|AC096909.10| Rattus norvegicus 8 BAC CH230-88B13 (Children's Hospital Oakland Research Institute) complete sequence Length = 241078 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 134 tagacatcaaaagaaaaaac 153 |||||||||||||||||||| Sbjct: 8523 tagacatcaaaagaaaaaac 8542
>emb|AL645488.6| Human DNA sequence from clone RP11-33J1 on chromosome 1 Contains a CpG island, complete sequence Length = 105641 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 349 tttgcagaaaataaatattc 368 |||||||||||||||||||| Sbjct: 100711 tttgcagaaaataaatattc 100730
>emb|AL161787.13| Human DNA sequence from clone RP11-40C6 on chromosome 9 Contains the 5' end of the DAPK1 gene for death-associated protein kinase 1, a ribosomal protein S29 (RPS29) pseudogene, part of a novel gene and a CpG island, complete sequence Length = 119811 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 348 ttttgcagaaaataaatatt 367 |||||||||||||||||||| Sbjct: 44749 ttttgcagaaaataaatatt 44768
>emb|AL136372.8| Human DNA sequence from clone RP11-134C1 on chromosome 1q25.1-31.1 Contains a zinc finger protein pseudogene, complete sequence Length = 165880 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 32 aaaatatcacacatttacaa 51 |||||||||||||||||||| Sbjct: 82940 aaaatatcacacatttacaa 82921
>emb|Y10601.1|HSRNAALP Homo sapiens mRNA for ankyrin-like protein Length = 5190 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 133 gtagacatcaaaagaaaaaa 152 |||||||||||||||||||| Sbjct: 4328 gtagacatcaaaagaaaaaa 4309
>gb|AC027038.12| Oryza sativa chromosome 10 BAC OSJNBa0071K18 genomic sequence, complete sequence Length = 149758 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 155 aaacagaaataacaaaattaacta 178 |||||||||||||||| ||||||| Sbjct: 101685 aaacagaaataacaaatttaacta 101708
>gb|AC090133.6| Homo sapiens chromosome 8, clone RP11-813L8, complete sequence Length = 201279 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 143 aaagaaaaaaccaaacagaa 162 |||||||||||||||||||| Sbjct: 168463 aaagaaaaaaccaaacagaa 168444
>gb|AC123777.4| Homo sapiens chromosome 8, clone RP11-252C15, complete sequence Length = 175943 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 143 aaagaaaaaaccaaacagaa 162 |||||||||||||||||||| Sbjct: 111661 aaagaaaaaaccaaacagaa 111642
>emb|BX284634.8| Mouse DNA sequence from clone RP23-92B18 on chromosome 11 Contains the 3' end of the gene for a novel protein (C330012F17Rik, C130096N06Rik), the gene for a novel protein (2010316F05Rik), a novel gene, the Mtif2 gene for mitochondrial translational initiation factor 2, the Rps27a gene for ribosomal protein S27a, a ribosomal protein L7 (Rpl7) pseudogene, the gene for a novel protein (1700034F02Rik), a novel gene and a CpG island, complete sequence Length = 176038 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 143 aaagaaaaaaccaaacagaaataa 166 ||||| |||||||||||||||||| Sbjct: 44196 aaagagaaaaccaaacagaaataa 44173
>emb|CR859616.1| Pongo pygmaeus mRNA; cDNA DKFZp468J165 (from clone DKFZp468J165) Length = 2880 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 135 agacatcaaaagaaaaaacc 154 |||||||||||||||||||| Sbjct: 1098 agacatcaaaagaaaaaacc 1117
>gb|AC093223.3| Homo sapiens chromosome 5 clone CTD-2220G6, complete sequence Length = 125980 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 354 agaaaataaatattcctgtt 373 |||||||||||||||||||| Sbjct: 43473 agaaaataaatattcctgtt 43454
>gb|AC006569.5| Arabidopsis thaliana chromosome 2 clone F11A3 map mi148, complete sequence Length = 93868 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 347 cttttgcagaaaataaatat 366 |||||||||||||||||||| Sbjct: 27232 cttttgcagaaaataaatat 27213
>gb|AC022867.10| Homo sapiens chromosome 8, clone RP11-367C12, complete sequence Length = 196931 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 133 gtagacatcaaaagaaaaaa 152 |||||||||||||||||||| Sbjct: 186011 gtagacatcaaaagaaaaaa 186030
>gb|AY070748.1| Arabidopsis thaliana AT5g40730/MNF13_250 mRNA sequence Length = 383 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 138 catcaaaagaaaaaaccaaa 157 |||||||||||||||||||| Sbjct: 22 catcaaaagaaaaaaccaaa 41
>gb|AC016057.6| Homo sapiens chromosome 8, clone RP11-383H13, complete sequence Length = 197785 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 133 gtagacatcaaaagaaaaaa 152 |||||||||||||||||||| Sbjct: 115320 gtagacatcaaaagaaaaaa 115339
>gb|AE010300.1| Leptospira interrogans serovar lai str. 56601 chromosome I, complete sequence Length = 4332241 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 345 ttcttttgcagaaaataaat 364 |||||||||||||||||||| Sbjct: 858137 ttcttttgcagaaaataaat 858118
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 155 aaacagaaataacaaaattaacta 178 |||||||||||||||| ||||||| Sbjct: 16558557 aaacagaaataacaaatttaacta 16558534
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 161 aaataacaaaattaactaca 180 |||||||||||||||||||| Sbjct: 2061407 aaataacaaaattaactaca 2061388
>emb|BX833524.1|CNS09Z9Z Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL60ZB03 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 417 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 138 catcaaaagaaaaaaccaaa 157 |||||||||||||||||||| Sbjct: 15 catcaaaagaaaaaaccaaa 34
>emb|BX834072.1|CNS09Z1K Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL94ZA10 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 408 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 138 catcaaaagaaaaaaccaaa 157 |||||||||||||||||||| Sbjct: 13 catcaaaagaaaaaaccaaa 32
>emb|BX833879.1|CNS09Z5C Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL81ZB11 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 412 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 138 catcaaaagaaaaaaccaaa 157 |||||||||||||||||||| Sbjct: 5 catcaaaagaaaaaaccaaa 24
>emb|BX833352.1|CNS09Z2W Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL47ZC02 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 419 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 138 catcaaaagaaaaaaccaaa 157 |||||||||||||||||||| Sbjct: 18 catcaaaagaaaaaaccaaa 37
>emb|BX833320.1|CNS09Z2R Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL44ZE11 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 416 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 138 catcaaaagaaaaaaccaaa 157 |||||||||||||||||||| Sbjct: 15 catcaaaagaaaaaaccaaa 34
>emb|BX832950.1|CNS09Z4D Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL25ZE12 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 419 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 138 catcaaaagaaaaaaccaaa 157 |||||||||||||||||||| Sbjct: 18 catcaaaagaaaaaaccaaa 37
>emb|BX832847.1|CNS09Z57 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL17ZD01 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 421 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 138 catcaaaagaaaaaaccaaa 157 |||||||||||||||||||| Sbjct: 20 catcaaaagaaaaaaccaaa 39
>gb|AC074030.17|AC074030 Homo sapiens 12 BAC RP11-425I22 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 163700 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 154 caaacagaaataacaaaatt 173 |||||||||||||||||||| Sbjct: 47077 caaacagaaataacaaaatt 47096
>gb|AC016144.13|AC016144 Homo sapiens 12 BAC RP11-367O10 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 178453 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 154 caaacagaaataacaaaatt 173 |||||||||||||||||||| Sbjct: 15642 caaacagaaataacaaaatt 15623
>dbj|AB009052.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MNF13 Length = 85992 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 138 catcaaaagaaaaaaccaaa 157 |||||||||||||||||||| Sbjct: 75863 catcaaaagaaaaaaccaaa 75882
>emb|BX950199.14| Zebrafish DNA sequence from clone CH211-215A11 in linkage group 24, complete sequence Length = 213091 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 142 aaaagaaaaaaccaaacaga 161 |||||||||||||||||||| Sbjct: 39458 aaaagaaaaaaccaaacaga 39439
>dbj|AP003386.2| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-699F16, complete sequence Length = 72000 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 142 aaaagaaaaaaccaaacaga 161 |||||||||||||||||||| Sbjct: 19380 aaaagaaaaaaccaaacaga 19361
>gb|AE000782.1| Archaeoglobus fulgidus DSM 4304, complete genome Length = 2178400 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 186 aaagaaagccgaggaagata 205 |||||||||||||||||||| Sbjct: 937274 aaagaaagccgaggaagata 937293
>gb|AE016823.1| Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130, chromosome I, complete sequence Length = 4277185 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 345 ttcttttgcagaaaataaat 364 |||||||||||||||||||| Sbjct: 3372592 ttcttttgcagaaaataaat 3372611
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 155 aaacagaaataacaaaattaacta 178 |||||||||||||||| ||||||| Sbjct: 16566798 aaacagaaataacaaatttaacta 16566775
>emb|AL928589.11| Mouse DNA sequence from clone RP23-350C1 on chromosome 2, complete sequence Length = 209053 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 339 taagtattcttttgcagaaa 358 |||||||||||||||||||| Sbjct: 38185 taagtattcttttgcagaaa 38204
>emb|AL671848.7| Mouse DNA sequence from clone RP23-110K5 on chromosome X, complete sequence Length = 190964 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 139 atcaaaagaaaaaaccaaac 158 |||||||||||||||||||| Sbjct: 68962 atcaaaagaaaaaaccaaac 68943
>gb|AC093490.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1127_B08, complete sequence Length = 112268 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 161 aaataacaaaattaactaca 180 |||||||||||||||||||| Sbjct: 28248 aaataacaaaattaactaca 28229 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,226,335 Number of Sequences: 3902068 Number of extensions: 6226335 Number of successful extensions: 143571 Number of sequences better than 10.0: 77 Number of HSP's better than 10.0 without gapping: 77 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 143111 Number of HSP's gapped (non-prelim): 460 length of query: 393 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 371 effective length of database: 17,147,199,772 effective search space: 6361611115412 effective search space used: 6361611115412 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)