ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl21g07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AL356608.23| Human DNA sequence from clone RP11-724N1 on chr... 44 0.063
2gb|AC009144.5|AC009144 Homo sapiens chromosome 16 clone RP11-551... 44 0.063
3gb|AC093440.2| Drosophila melanogaster clone BACR34H03, complete... 42 0.25
4gb|AC093047.1| Drosophila melanogaster, chromosome 2L, region 38... 42 0.25
5gb|AE003667.3| Drosophila melanogaster chromosome 2L, section 76... 42 0.25
6gb|AC002443.1|AC002443 Drosophila melanogaster DNA sequence (P1 ... 42 0.25
7gb|DP000016.1| Pan troglodytes target 1 genomic scaffold 38 3.9
8gb|AC087512.2| Pan troglodytes clone RP43-144M20, complete sequence 38 3.9
9gb|AC146205.2| Pan troglodytes BAC clone RP43-34B6 from 7, compl... 38 3.9
10gb|AC093476.6| Mus musculus chromosome 6, clone RP23-55C15, comp... 38 3.9
11gb|AE004394.1| Vibrio cholerae O1 biovar eltor str. N16961 chrom... 38 3.9
12gb|AC002066.2| Homo sapiens BAC clone CTB-30H15 from 7, complete... 38 3.9
13emb|AL645971.12| Mouse DNA sequence from clone RP23-378J19 on ch... 38 3.9
14gb|DP000025.1| Gorilla gorilla gorilla target 1 genomic scaffold 38 3.9
15gb|AF260225.1|AF260225 Homo sapiens TESTIN 2 and TESTIN 3 genes,... 38 3.9
16emb|AJ133269.1|HSA133269 Homo sapiens caveolin-1/-2 locus, Conti... 38 3.9

>emb|AL356608.23| Human DNA sequence from clone RP11-724N1 on chromosome 10 Contains the
             5' end of the CNNM2 gene for cyclin M2 and a CpG island,
             complete sequence
          Length = 161053

 Score = 44.1 bits (22), Expect = 0.063
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 62    tagtacaaaactttccaaaacgaatc 87
             |||||||||||||||||||| |||||
Sbjct: 21091 tagtacaaaactttccaaaatgaatc 21066



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>gb|AC009144.5|AC009144 Homo sapiens chromosome 16 clone RP11-551E2, complete sequence
          Length = 173758

 Score = 44.1 bits (22), Expect = 0.063
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 62     tagtacaaaactttccaaaacgaatc 87
              |||||||||||||||||||| |||||
Sbjct: 134879 tagtacaaaactttccaaaatgaatc 134854



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>gb|AC093440.2| Drosophila melanogaster clone BACR34H03, complete sequence
          Length = 192132

 Score = 42.1 bits (21), Expect = 0.25
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 4      aaaccgaaacaccaaaaaccc 24
              |||||||||||||||||||||
Sbjct: 183319 aaaccgaaacaccaaaaaccc 183299



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>gb|AC093047.1| Drosophila melanogaster, chromosome 2L, region 38D-38E, BAC clone
             BACR31P14, complete sequence
          Length = 156806

 Score = 42.1 bits (21), Expect = 0.25
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 4     aaaccgaaacaccaaaaaccc 24
             |||||||||||||||||||||
Sbjct: 28289 aaaccgaaacaccaaaaaccc 28269



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>gb|AE003667.3| Drosophila melanogaster chromosome 2L, section 76 of 83 of the complete
              sequence
          Length = 257666

 Score = 42.1 bits (21), Expect = 0.25
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 4      aaaccgaaacaccaaaaaccc 24
              |||||||||||||||||||||
Sbjct: 146311 aaaccgaaacaccaaaaaccc 146291



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>gb|AC002443.1|AC002443 Drosophila melanogaster DNA sequence (P1 DS02109 (D53)), complete
             sequence
          Length = 79826

 Score = 42.1 bits (21), Expect = 0.25
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 4     aaaccgaaacaccaaaaaccc 24
             |||||||||||||||||||||
Sbjct: 39852 aaaccgaaacaccaaaaaccc 39832



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>gb|DP000016.1| Pan troglodytes target 1 genomic scaffold
          Length = 1623484

 Score = 38.2 bits (19), Expect = 3.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 53     aggaaagagtagtacaaaa 71
              |||||||||||||||||||
Sbjct: 218393 aggaaagagtagtacaaaa 218411



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>gb|AC087512.2| Pan troglodytes clone RP43-144M20, complete sequence
          Length = 120797

 Score = 38.2 bits (19), Expect = 3.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 53   aggaaagagtagtacaaaa 71
            |||||||||||||||||||
Sbjct: 7571 aggaaagagtagtacaaaa 7589



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>gb|AC146205.2| Pan troglodytes BAC clone RP43-34B6 from 7, complete sequence
          Length = 187725

 Score = 38.2 bits (19), Expect = 3.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 53    aggaaagagtagtacaaaa 71
             |||||||||||||||||||
Sbjct: 18571 aggaaagagtagtacaaaa 18589



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>gb|AC093476.6| Mus musculus chromosome 6, clone RP23-55C15, complete sequence
          Length = 259659

 Score = 38.2 bits (19), Expect = 3.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 70     aactttccaaaacgaatca 88
              |||||||||||||||||||
Sbjct: 111834 aactttccaaaacgaatca 111852



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>gb|AE004394.1| Vibrio cholerae O1 biovar eltor str. N16961 chromosome II, section 51
            of 93 of the complete chromosome
          Length = 10117

 Score = 38.2 bits (19), Expect = 3.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 2    ccaaaccgaaacaccaaaa 20
            |||||||||||||||||||
Sbjct: 9582 ccaaaccgaaacaccaaaa 9600



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>gb|AC002066.2| Homo sapiens BAC clone CTB-30H15 from 7, complete sequence
          Length = 151770

 Score = 38.2 bits (19), Expect = 3.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 53   aggaaagagtagtacaaaa 71
            |||||||||||||||||||
Sbjct: 9534 aggaaagagtagtacaaaa 9552



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>emb|AL645971.12| Mouse DNA sequence from clone RP23-378J19 on chromosome 11 Vontains the
             5' end of the gene for novel protein similar to human RAP1
             GTPase activating protein 1 RAP1GA1,,a novel gene and
             three CpG islands, complete sequence
          Length = 102898

 Score = 38.2 bits (19), Expect = 3.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 51    tcaggaaagagtagtacaa 69
             |||||||||||||||||||
Sbjct: 78010 tcaggaaagagtagtacaa 78028



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>gb|DP000025.1| Gorilla gorilla gorilla target 1 genomic scaffold
          Length = 1787293

 Score = 38.2 bits (19), Expect = 3.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 53     aggaaagagtagtacaaaa 71
              |||||||||||||||||||
Sbjct: 144731 aggaaagagtagtacaaaa 144749



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>gb|AF260225.1|AF260225 Homo sapiens TESTIN 2 and TESTIN 3 genes, complete cds, alternatively
              spliced
          Length = 162354

 Score = 38.2 bits (19), Expect = 3.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 53     aggaaagagtagtacaaaa 71
              |||||||||||||||||||
Sbjct: 151790 aggaaagagtagtacaaaa 151808



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>emb|AJ133269.1|HSA133269 Homo sapiens caveolin-1/-2 locus, Contig1, D7S522, genes CAV2 (exons
            1, 2a, and 2b), CAV1 (exons 1 and 2)
          Length = 190537

 Score = 38.2 bits (19), Expect = 3.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 53   aggaaagagtagtacaaaa 71
            |||||||||||||||||||
Sbjct: 9534 aggaaagagtagtacaaaa 9552


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 781,812
Number of Sequences: 3902068
Number of extensions: 781812
Number of successful extensions: 63745
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 63712
Number of HSP's gapped (non-prelim): 33
length of query: 90
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 69
effective length of database: 17,151,101,840
effective search space: 1183426026960
effective search space used: 1183426026960
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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