Clone Name | rbastl21e02 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | INX2_SCHAM (Q9XYN1) Innexin inx2 (Innexin-2) (G-Inx2) | 29 | 3.4 | 2 | MCM4_MOUSE (P49717) DNA replication licensing factor MCM4 (CDC21... | 28 | 4.4 | 3 | NU6M_BRACM (P60498) NADH-ubiquinone oxidoreductase chain 6 (EC 1... | 27 | 9.9 |
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>INX2_SCHAM (Q9XYN1) Innexin inx2 (Innexin-2) (G-Inx2)| Length = 359 Score = 28.9 bits (63), Expect = 3.4 Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 1/55 (1%) Frame = -2 Query: 267 QFANSGDLQSFXXXXXXXANIVSGVLYTSIYFETTRCWWLI-SVLSFGGMIYKLS 106 ++ SG +Q+F NIV+ +Y ++F W++I SVL+ G++Y+L+ Sbjct: 242 KYGPSGSVQTFDGLCVLPLNIVNEKIYVFLWF-----WFVILSVLTGIGLVYRLA 291
>MCM4_MOUSE (P49717) DNA replication licensing factor MCM4 (CDC21 homolog)| (P1-CDC21) Length = 862 Score = 28.5 bits (62), Expect = 4.4 Identities = 13/34 (38%), Positives = 17/34 (50%) Frame = -1 Query: 133 IWGHDI*VICCWEDVHKFLYCRDDVCIWDSFNFG 32 IWG D+ V C E+ +FL C D + N G Sbjct: 151 IWGTDVNVATCKENFQRFLQCFTDPLAKEEENVG 184
>NU6M_BRACM (P60498) NADH-ubiquinone oxidoreductase chain 6 (EC 1.6.5.3) (NADH| dehydrogenase subunit 6) Length = 205 Score = 27.3 bits (59), Expect = 9.9 Identities = 17/51 (33%), Positives = 24/51 (47%) Frame = -2 Query: 210 NIVSGVLYTSIYFETTRCWWLISVLSFGGMIYKLSAVGRMFTSFCIVEMMY 58 N V VL+ F T L+ L F MI+ + +G + SF V MM+ Sbjct: 22 NPVHSVLFPIPVFRDTSGLLLLLGLDFFAMIFPVVHIGAIAVSFLFVVMMF 72 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 44,115,781 Number of Sequences: 219361 Number of extensions: 765499 Number of successful extensions: 1435 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 1425 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1435 length of database: 80,573,946 effective HSP length: 81 effective length of database: 62,805,705 effective search space used: 1507336920 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)