ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl21e02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1INX2_SCHAM (Q9XYN1) Innexin inx2 (Innexin-2) (G-Inx2) 29 3.4
2MCM4_MOUSE (P49717) DNA replication licensing factor MCM4 (CDC21... 28 4.4
3NU6M_BRACM (P60498) NADH-ubiquinone oxidoreductase chain 6 (EC 1... 27 9.9

>INX2_SCHAM (Q9XYN1) Innexin inx2 (Innexin-2) (G-Inx2)|
          Length = 359

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
 Frame = -2

Query: 267 QFANSGDLQSFXXXXXXXANIVSGVLYTSIYFETTRCWWLI-SVLSFGGMIYKLS 106
           ++  SG +Q+F        NIV+  +Y  ++F     W++I SVL+  G++Y+L+
Sbjct: 242 KYGPSGSVQTFDGLCVLPLNIVNEKIYVFLWF-----WFVILSVLTGIGLVYRLA 291



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>MCM4_MOUSE (P49717) DNA replication licensing factor MCM4 (CDC21 homolog)|
           (P1-CDC21)
          Length = 862

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -1

Query: 133 IWGHDI*VICCWEDVHKFLYCRDDVCIWDSFNFG 32
           IWG D+ V  C E+  +FL C  D    +  N G
Sbjct: 151 IWGTDVNVATCKENFQRFLQCFTDPLAKEEENVG 184



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>NU6M_BRACM (P60498) NADH-ubiquinone oxidoreductase chain 6 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 6)
          Length = 205

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = -2

Query: 210 NIVSGVLYTSIYFETTRCWWLISVLSFGGMIYKLSAVGRMFTSFCIVEMMY 58
           N V  VL+    F  T    L+  L F  MI+ +  +G +  SF  V MM+
Sbjct: 22  NPVHSVLFPIPVFRDTSGLLLLLGLDFFAMIFPVVHIGAIAVSFLFVVMMF 72


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,115,781
Number of Sequences: 219361
Number of extensions: 765499
Number of successful extensions: 1435
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1435
length of database: 80,573,946
effective HSP length: 81
effective length of database: 62,805,705
effective search space used: 1507336920
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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