ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl21e01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC131794.3| Mus musculus BAC clone RP24-486P14 from chromosom... 44 0.25
2gb|AC153012.4| Mus musculus BAC clone RP23-302F19 from chromosom... 44 0.25
3gb|AC145789.2| Xenopus tropicalis clone CH216-127D2, complete se... 42 0.98
4gb|AC113483.7| Mus musculus chromosome 1, clone RP23-343E12, com... 40 3.9
5emb|AL590378.5| Human DNA sequence from clone RP11-49L2 on chrom... 40 3.9
6gb|AC078829.10| Oryza sativa chromosome 10 BAC OSJNBa0026O12 gen... 40 3.9
7dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.9
8dbj|BS000151.1| Pan troglodytes chromosome 22 clone:PTF22-022C02... 40 3.9
9dbj|BS000145.1| Pan troglodytes chromosome 22 clone:PTF22-034P13... 40 3.9
10gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 3.9
11dbj|AP005270.2| Homo sapiens genomic DNA, chromosome 18 clone:RP... 40 3.9

>gb|AC131794.3| Mus musculus BAC clone RP24-486P14 from chromosome 9, complete sequence
          Length = 166272

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 101    taatacaatgtgtagattatgt 122
              ||||||||||||||||||||||
Sbjct: 144108 taatacaatgtgtagattatgt 144129



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>gb|AC153012.4| Mus musculus BAC clone RP23-302F19 from chromosome 9, complete sequence
          Length = 196764

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 101    taatacaatgtgtagattatgt 122
              ||||||||||||||||||||||
Sbjct: 112873 taatacaatgtgtagattatgt 112894



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>gb|AC145789.2| Xenopus tropicalis clone CH216-127D2, complete sequence
          Length = 153054

 Score = 42.1 bits (21), Expect = 0.98
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 49    atattgtaatacaatgtaaag 69
             |||||||||||||||||||||
Sbjct: 23362 atattgtaatacaatgtaaag 23342



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>gb|AC113483.7| Mus musculus chromosome 1, clone RP23-343E12, complete sequence
          Length = 207188

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 165    aattgttggcctcatcaaca 184
              ||||||||||||||||||||
Sbjct: 114580 aattgttggcctcatcaaca 114561



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>emb|AL590378.5| Human DNA sequence from clone RP11-49L2 on chromosome 10 Contains a novel
              gene and a novel MAM domain containing protein, complete
              sequence
          Length = 150889

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 39     gttaatgtgtatattgtaat 58
              ||||||||||||||||||||
Sbjct: 111609 gttaatgtgtatattgtaat 111590



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>gb|AC078829.10| Oryza sativa chromosome 10 BAC OSJNBa0026O12 genomic sequence, complete
             sequence
          Length = 163279

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 130   atcaacagaccaaaaaattt 149
             ||||||||||||||||||||
Sbjct: 34149 atcaacagaccaaaaaattt 34130



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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 130      atcaacagaccaaaaaattt 149
                ||||||||||||||||||||
Sbjct: 17338130 atcaacagaccaaaaaattt 17338149



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>dbj|BS000151.1| Pan troglodytes chromosome 22 clone:PTF22-022C02, map 22, complete
             sequences
          Length = 34681

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 39    gttaatgtgtatattgtaat 58
             ||||||||||||||||||||
Sbjct: 16188 gttaatgtgtatattgtaat 16169



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>dbj|BS000145.1| Pan troglodytes chromosome 22 clone:PTF22-034P13, map 22, complete
             sequences
          Length = 33043

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 39    gttaatgtgtatattgtaat 58
             ||||||||||||||||||||
Sbjct: 14050 gttaatgtgtatattgtaat 14031



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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 130      atcaacagaccaaaaaattt 149
                ||||||||||||||||||||
Sbjct: 17347170 atcaacagaccaaaaaattt 17347189



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>dbj|AP005270.2| Homo sapiens genomic DNA, chromosome 18 clone:RP11-291B19, complete
              sequence
          Length = 200493

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 1      ttcagatcaatatgttcaat 20
              ||||||||||||||||||||
Sbjct: 145358 ttcagatcaatatgttcaat 145339


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,204,561
Number of Sequences: 3902068
Number of extensions: 3204561
Number of successful extensions: 65110
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 65048
Number of HSP's gapped (non-prelim): 62
length of query: 295
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 273
effective length of database: 17,147,199,772
effective search space: 4681185537756
effective search space used: 4681185537756
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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