ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl21d11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 113 3e-22
2dbj|AP003875.3| Oryza sativa (japonica cultivar-group) genomic D... 113 3e-22
3emb|AJ427981.1|OSA427981 Oryza sativa HAK12 gene for putative po... 113 3e-22
4dbj|AK069377.1| Oryza sativa (japonica cultivar-group) cDNA clon... 113 3e-22
5gb|AY108668.1| Zea mays PCO064352 mRNA sequence 50 0.004
6emb|AL731610.4|OSJN00255 Oryza sativa genomic DNA, chromosome 4,... 46 0.056
7dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.056
8emb|AJ427980.1|OSA427980 Oryza sativa HAK11 gene for putative po... 46 0.056
9dbj|AK072123.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.056
10ref|XM_473875.1| Oryza sativa (japonica cultivar-group), predic... 44 0.22
11gb|AC008277.4| Homo sapiens BAC clone RP11-311B14 from 2, comple... 42 0.87
12gb|AC035249.7|AC035249 Arabidopsis thaliana chromosome 1 BAC F8D... 42 0.87
13gb|AC069557.5|AC069557 Genomic Sequence For Arabidopsis thaliana... 42 0.87
14dbj|AP002054.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 42 0.87
15dbj|AB046438.1| Arabidopsis thaliana DNA, chromosome 5 centromer... 42 0.87
16gb|AC113493.9| Mus musculus chromosome 15, clone RP23-359H23, co... 40 3.5
17gb|AC116812.10| Mus musculus chromosome 15, clone RP24-357G13, c... 40 3.5
18emb|AL163279.2|HS21C079 Homo sapiens chromosome 21 segment HS21C079 40 3.5
19dbj|AK095157.1| Homo sapiens cDNA FLJ37838 fis, clone BRSSN2010830 40 3.5
20gb|AC157524.2| Pan troglodytes BAC clone CH251-516K17 from chrom... 40 3.5
21dbj|AK155337.1| Mus musculus NOD-derived CD11c +ve dendritic cel... 40 3.5
22gb|AC110377.5| Mus musculus BAC clone RP23-460A13 from chromosom... 40 3.5
23gb|AC016583.8| Homo sapiens chromosome 5 clone CTD-2591A1, compl... 40 3.5
24gb|AC155175.3| Pan troglodytes BAC clone CH251-72L14 from chromo... 40 3.5
25gb|AF129408.4| Homo sapiens chromosome 21 clone RP1-31K18 map q2... 40 3.5
26dbj|BS000164.1| Pan troglodytes chromosome 22 clone:RP43-027I07,... 40 3.5
27emb|AL954224.1|PT270D20 Pan troglodytes chromosome 22 BAC PTB-27... 40 3.5
28gb|AC117767.13| Mus musculus chromosome 1, clone RP24-507O16, co... 40 3.5 
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score =  113 bits (57), Expect = 3e-22
 Identities = 117/137 (85%)
 Strand = Plus / Minus

                                                                           
Query: 104     gttcatatatagtagatctggcctacgttgagaaggctttcatgaggaacattgaatatc 163
               |||||||||||||| ||||||||||| |||||||| |||||||| |||||||||||||||
Sbjct: 6204829 gttcatatatagtatatctggcctacattgagaagactttcatggggaacattgaatatc 6204770

                                                                           
Query: 164     acgctgtgttctctacagaccttcctgaggaaggcatacaggtgatccacaacaatccta 223
               || ||||  || || |||| |||||||||||| ||| |||  | || |||| ||| | | 
Sbjct: 6204769 acactgttctccctgcagatcttcctgaggaatgcaaacacataattcacagcaaccttc 6204710

                                
Query: 224     ttgatgatccctgaatc 240
               |||||||||||||||||
Sbjct: 6204709 ttgatgatccctgaatc 6204693
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>dbj|AP003875.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1119_C05
          Length = 126112

 Score =  113 bits (57), Expect = 3e-22
 Identities = 117/137 (85%)
 Strand = Plus / Minus

                                                                         
Query: 104   gttcatatatagtagatctggcctacgttgagaaggctttcatgaggaacattgaatatc 163
             |||||||||||||| ||||||||||| |||||||| |||||||| |||||||||||||||
Sbjct: 68222 gttcatatatagtatatctggcctacattgagaagactttcatggggaacattgaatatc 68163

                                                                         
Query: 164   acgctgtgttctctacagaccttcctgaggaaggcatacaggtgatccacaacaatccta 223
             || ||||  || || |||| |||||||||||| ||| |||  | || |||| ||| | | 
Sbjct: 68162 acactgttctccctgcagatcttcctgaggaatgcaaacacataattcacagcaaccttc 68103

                              
Query: 224   ttgatgatccctgaatc 240
             |||||||||||||||||
Sbjct: 68102 ttgatgatccctgaatc 68086
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>emb|AJ427981.1|OSA427981 Oryza sativa HAK12 gene for putative potasium transporter, exons 1-9
          Length = 5418

 Score =  113 bits (57), Expect = 3e-22
 Identities = 117/137 (85%)
 Strand = Plus / Minus

                                                                        
Query: 104  gttcatatatagtagatctggcctacgttgagaaggctttcatgaggaacattgaatatc 163
            |||||||||||||| ||||||||||| |||||||| |||||||| |||||||||||||||
Sbjct: 4924 gttcatatatagtatatctggcctacattgagaagactttcatggggaacattgaatatc 4865

                                                                        
Query: 164  acgctgtgttctctacagaccttcctgaggaaggcatacaggtgatccacaacaatccta 223
            || ||||  || || |||| |||||||||||| ||| |||  | || |||| ||| | | 
Sbjct: 4864 acactgttctccctgcagatcttcctgaggaatgcaaacacataattcacagcaaccttc 4805

                             
Query: 224  ttgatgatccctgaatc 240
            |||||||||||||||||
Sbjct: 4804 ttgatgatccctgaatc 4788
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>dbj|AK069377.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023012J20, full
            insert sequence
          Length = 3200

 Score =  113 bits (57), Expect = 3e-22
 Identities = 117/137 (85%)
 Strand = Plus / Minus

                                                                        
Query: 104  gttcatatatagtagatctggcctacgttgagaaggctttcatgaggaacattgaatatc 163
            |||||||||||||| ||||||||||| |||||||| |||||||| |||||||||||||||
Sbjct: 2954 gttcatatatagtatatctggcctacattgagaagactttcatggggaacattgaatatc 2895

                                                                        
Query: 164  acgctgtgttctctacagaccttcctgaggaaggcatacaggtgatccacaacaatccta 223
            || ||||  || || |||| |||||||||||| ||| |||  | || |||| ||| | | 
Sbjct: 2894 acactgttctccctgcagatcttcctgaggaatgcaaacacataattcacagcaaccttc 2835

                             
Query: 224  ttgatgatccctgaatc 240
            |||||||||||||||||
Sbjct: 2834 ttgatgatccctgaatc 2818
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>gb|AY108668.1| Zea mays PCO064352 mRNA sequence
          Length = 1690

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 91/113 (80%)
 Strand = Plus / Minus

                                                                        
Query: 137  aggctttcatgaggaacattgaatatcacgctgtgttctctacagaccttcctgaggaag 196
            ||||| ||||| ||||||||||| ||  ||||||  || || |||| |||||| ||||| 
Sbjct: 1479 aggctctcatggggaacattgaagatggcgctgttctccctgcagatcttcctaaggaaa 1420

                                                                 
Query: 197  gcatacaggtgatccacaacaatcctattgatgatccctgaatccctgcgggc 249
            ||||||| || ||  | | ||||| | ||||||| ||||||||| ||||||||
Sbjct: 1419 gcatacaagtaattgatagcaatcttcttgatgaaccctgaatctctgcgggc 1367
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>emb|AL731610.4|OSJN00255 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0070C17,
              complete sequence
          Length = 160484

 Score = 46.1 bits (23), Expect = 0.056
 Identities = 80/99 (80%)
 Strand = Plus / Plus

                                                                          
Query: 105    ttcatatatagtagatctggcctacgttgagaaggctttcatgaggaacattgaatatca 164
              |||||||||| || || ||||| || || || | ||| ||||| ||||||||||| ||||
Sbjct: 144520 ttcatatataatatatttggccaacattaagcaagctctcatggggaacattgaagatca 144579

                                                     
Query: 165    cgctgtgttctctacagaccttcctgaggaaggcataca 203
              | ||||  || || |||| |||||| | |||||||||||
Sbjct: 144580 cactgttctccctgcagatcttcctcatgaaggcataca 144618
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 46.1 bits (23), Expect = 0.056
 Identities = 80/99 (80%)
 Strand = Plus / Plus

                                                                            
Query: 105      ttcatatatagtagatctggcctacgttgagaaggctttcatgaggaacattgaatatca 164
                |||||||||| || || ||||| || || || | ||| ||||| ||||||||||| ||||
Sbjct: 31162439 ttcatatataatatatttggccaacattaagcaagctctcatggggaacattgaagatca 31162498

                                                       
Query: 165      cgctgtgttctctacagaccttcctgaggaaggcataca 203
                | ||||  || || |||| |||||| | |||||||||||
Sbjct: 31162499 cactgttctccctgcagatcttcctcatgaaggcataca 31162537
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>emb|AJ427980.1|OSA427980 Oryza sativa HAK11 gene for putative potasium transporter, exons 1-9
          Length = 4562

 Score = 46.1 bits (23), Expect = 0.056
 Identities = 80/99 (80%)
 Strand = Plus / Minus

                                                                        
Query: 105  ttcatatatagtagatctggcctacgttgagaaggctttcatgaggaacattgaatatca 164
            |||||||||| || || ||||| || || || | ||| ||||| ||||||||||| ||||
Sbjct: 4074 ttcatatataatatatttggccaacattaagcaagctctcatggggaacattgaagatca 4015

                                                   
Query: 165  cgctgtgttctctacagaccttcctgaggaaggcataca 203
            | ||||  || || |||| |||||| | |||||||||||
Sbjct: 4014 cactgttctccctgcagatcttcctcatgaaggcataca 3976
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>dbj|AK072123.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013122K08, full
            insert sequence
          Length = 3453

 Score = 46.1 bits (23), Expect = 0.056
 Identities = 80/99 (80%)
 Strand = Plus / Minus

                                                                        
Query: 105  ttcatatatagtagatctggcctacgttgagaaggctttcatgaggaacattgaatatca 164
            |||||||||| || || ||||| || || || | ||| ||||| ||||||||||| ||||
Sbjct: 3245 ttcatatataatatatttggccaacattaagcaagctctcatggggaacattgaagatca 3186

                                                   
Query: 165  cgctgtgttctctacagaccttcctgaggaaggcataca 203
            | ||||  || || |||| |||||| | |||||||||||
Sbjct: 3185 cactgttctccctgcagatcttcctcatgaaggcataca 3147
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>ref|XM_473875.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2217

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 79/98 (80%)
 Strand = Plus / Minus

                                                                        
Query: 106  tcatatatagtagatctggcctacgttgagaaggctttcatgaggaacattgaatatcac 165
            ||||||||| || || ||||| || || || | ||| ||||| ||||||||||| |||||
Sbjct: 2217 tcatatataatatatttggccaacattaagcaagctctcatggggaacattgaagatcac 2158

                                                  
Query: 166  gctgtgttctctacagaccttcctgaggaaggcataca 203
             ||||  || || |||| |||||| | |||||||||||
Sbjct: 2157 actgttctccctgcagatcttcctcatgaaggcataca 2120
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>gb|AC008277.4| Homo sapiens BAC clone RP11-311B14 from 2, complete sequence
          Length = 177089

 Score = 42.1 bits (21), Expect = 0.87
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 35     gccctacacaagtacacagta 55
              |||||||||||||||||||||
Sbjct: 138656 gccctacacaagtacacagta 138676
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>gb|AC035249.7|AC035249 Arabidopsis thaliana chromosome 1 BAC F8D11 genomic sequence, complete
             sequence
          Length = 109431

 Score = 42.1 bits (21), Expect = 0.87
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 190   gaggaaggcatacaggtgatccaca 214
             |||||||||||| ||||||||||||
Sbjct: 21920 gaggaaggcatataggtgatccaca 21896
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>gb|AC069557.5|AC069557 Genomic Sequence For Arabidopsis thaliana Clone T29A4 From Chromosome
             V, complete sequence
          Length = 121501

 Score = 42.1 bits (21), Expect = 0.87
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 190   gaggaaggcatacaggtgatccaca 214
             |||||||||||| ||||||||||||
Sbjct: 68147 gaggaaggcatataggtgatccaca 68171
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>dbj|AP002054.1| Arabidopsis thaliana genomic DNA, chromosome 3, BAC clone: T15D2
          Length = 87219

 Score = 42.1 bits (21), Expect = 0.87
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 190   gaggaaggcatacaggtgatccaca 214
             |||||||||||| ||||||||||||
Sbjct: 12407 gaggaaggcatataggtgatccaca 12383
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>dbj|AB046438.1| Arabidopsis thaliana DNA, chromosome 5 centromere region, clone:T3E2
          Length = 77204

 Score = 42.1 bits (21), Expect = 0.87
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 190   gaggaaggcatacaggtgatccaca 214
             |||||||||||| ||||||||||||
Sbjct: 24264 gaggaaggcatataggtgatccaca 24240
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>gb|AC113493.9| Mus musculus chromosome 15, clone RP23-359H23, complete sequence
          Length = 207687

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 8      ataactgatcatttacaacg 27
              ||||||||||||||||||||
Sbjct: 186286 ataactgatcatttacaacg 186305
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>gb|AC116812.10| Mus musculus chromosome 15, clone RP24-357G13, complete sequence
          Length = 183993

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 8      ataactgatcatttacaacg 27
              ||||||||||||||||||||
Sbjct: 134160 ataactgatcatttacaacg 134141
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>emb|AL163279.2|HS21C079 Homo sapiens chromosome 21 segment HS21C079
          Length = 340000

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 73    gaaccaaaagaacagaagaa 92
             ||||||||||||||||||||
Sbjct: 73345 gaaccaaaagaacagaagaa 73364
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>dbj|AK095157.1| Homo sapiens cDNA FLJ37838 fis, clone BRSSN2010830
          Length = 2432

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 201 acaggtgatccacaacaatc 220
           ||||||||||||||||||||
Sbjct: 877 acaggtgatccacaacaatc 896
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>gb|AC157524.2| Pan troglodytes BAC clone CH251-516K17 from chromosome unknown, complete
              sequence
          Length = 204622

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 73     gaaccaaaagaacagaagaa 92
              ||||||||||||||||||||
Sbjct: 203578 gaaccaaaagaacagaagaa 203559
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>dbj|AK155337.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN
            full-length enriched library, clone:F630221C18
            product:unclassifiable, full insert sequence
          Length = 1447

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 8    ataactgatcatttacaacg 27
            ||||||||||||||||||||
Sbjct: 1092 ataactgatcatttacaacg 1073
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>gb|AC110377.5| Mus musculus BAC clone RP23-460A13 from chromosome 12, complete
             sequence
          Length = 196540

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 50    acagtactgctcactctgaa 69
             ||||||||||||||||||||
Sbjct: 63642 acagtactgctcactctgaa 63661
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>gb|AC016583.8| Homo sapiens chromosome 5 clone CTD-2591A1, complete sequence
          Length = 184769

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 201   acaggtgatccacaacaatc 220
             ||||||||||||||||||||
Sbjct: 61700 acaggtgatccacaacaatc 61719
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>gb|AC155175.3| Pan troglodytes BAC clone CH251-72L14 from chromosome unknown, complete
              sequence
          Length = 171893

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 73     gaaccaaaagaacagaagaa 92
              ||||||||||||||||||||
Sbjct: 130581 gaaccaaaagaacagaagaa 130600
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>gb|AF129408.4| Homo sapiens chromosome 21 clone RP1-31K18 map q22.2, complete sequence
          Length = 141843

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 73    gaaccaaaagaacagaagaa 92
             ||||||||||||||||||||
Sbjct: 65231 gaaccaaaagaacagaagaa 65250
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>dbj|BS000164.1| Pan troglodytes chromosome 22 clone:RP43-027I07, map 22, complete
             sequences
          Length = 152825

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 73    gaaccaaaagaacagaagaa 92
             ||||||||||||||||||||
Sbjct: 74439 gaaccaaaagaacagaagaa 74458
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>emb|AL954224.1|PT270D20 Pan troglodytes chromosome 22 BAC PTB-270D20, complete sequence
          Length = 192642

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 73     gaaccaaaagaacagaagaa 92
              ||||||||||||||||||||
Sbjct: 164304 gaaccaaaagaacagaagaa 164323
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>gb|AC117767.13| Mus musculus chromosome 1, clone RP24-507O16, complete sequence
          Length = 192892

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 123    ggcctacgttgagaaggctttcat 146
              ||||||| ||||||||||||||||
Sbjct: 163509 ggcctacattgagaaggctttcat 163532


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,112,772
Number of Sequences: 3902068
Number of extensions: 2112772
Number of successful extensions: 36800
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 36727
Number of HSP's gapped (non-prelim): 70
length of query: 266
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 244
effective length of database: 17,147,199,772
effective search space: 4183916744368
effective search space used: 4183916744368
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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