ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl21d07 |
|---|---|
| Clone Library Name | barley_pub |
>gb|CP000082.1| Psychrobacter arcticus 273-4, complete genome Length = 2650701 Score = 40.1 bits (20), Expect = 0.48 Identities = 20/20 (100%) Strand = Plus / Plus Query: 3 aaaactgaaaactattttct 22 |||||||||||||||||||| Sbjct: 2306601 aaaactgaaaactattttct 2306620
>gb|AC157659.2| Mus musculus BAC clone RP23-275J9 from chromosome 6, complete sequence Length = 210200 Score = 40.1 bits (20), Expect = 0.48 Identities = 20/20 (100%) Strand = Plus / Plus Query: 8 tgaaaactattttctttctg 27 |||||||||||||||||||| Sbjct: 17837 tgaaaactattttctttctg 17856
>gb|CP000323.1| Psychrobacter cryohalolentis K5, complete genome Length = 3059876 Score = 40.1 bits (20), Expect = 0.48 Identities = 20/20 (100%) Strand = Plus / Plus Query: 3 aaaactgaaaactattttct 22 |||||||||||||||||||| Sbjct: 2652565 aaaactgaaaactattttct 2652584
>gb|AC022017.8| Homo sapiens chromosome 10 clone RP11-210G22, complete sequence Length = 180165 Score = 40.1 bits (20), Expect = 0.48 Identities = 20/20 (100%) Strand = Plus / Minus Query: 3 aaaactgaaaactattttct 22 |||||||||||||||||||| Sbjct: 28731 aaaactgaaaactattttct 28712
>gb|AC083902.5| Homo sapiens BAC clone RP11-766F14 from 4, complete sequence Length = 204860 Score = 40.1 bits (20), Expect = 0.48 Identities = 23/24 (95%) Strand = Plus / Minus Query: 6 actgaaaactattttctttctggc 29 ||||||||||| |||||||||||| Sbjct: 75316 actgaaaactagtttctttctggc 75293
>dbj|AK036632.1| Mus musculus adult male bone cDNA, RIKEN full-length enriched library, clone:9830143P17 product:unclassifiable, full insert sequence Length = 3337 Score = 40.1 bits (20), Expect = 0.48 Identities = 20/20 (100%) Strand = Plus / Plus Query: 8 tgaaaactattttctttctg 27 |||||||||||||||||||| Sbjct: 1663 tgaaaactattttctttctg 1682
>dbj|AP001994.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-215D10, complete sequence Length = 167376 Score = 40.1 bits (20), Expect = 0.48 Identities = 20/20 (100%) Strand = Plus / Plus Query: 3 aaaactgaaaactattttct 22 |||||||||||||||||||| Sbjct: 146216 aaaactgaaaactattttct 146235
>gb|AC142191.5| Mus musculus BAC clone RP24-530N5 from 6, complete sequence Length = 197971 Score = 40.1 bits (20), Expect = 0.48 Identities = 20/20 (100%) Strand = Plus / Minus Query: 8 tgaaaactattttctttctg 27 |||||||||||||||||||| Sbjct: 102524 tgaaaactattttctttctg 102505
>emb|AL671229.11| Mouse DNA sequence from clone RP23-93N10 on chromosome 4, complete sequence Length = 237082 Score = 40.1 bits (20), Expect = 0.48 Identities = 20/20 (100%) Strand = Plus / Plus Query: 15 tattttctttctggcatgat 34 |||||||||||||||||||| Sbjct: 21027 tattttctttctggcatgat 21046
>emb|AL671042.10| Mouse DNA sequence from clone RP23-382O24 on chromosome X, complete sequence Length = 186151 Score = 40.1 bits (20), Expect = 0.48 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 acaaaactgaaaactatttt 20 |||||||||||||||||||| Sbjct: 156128 acaaaactgaaaactatttt 156109
>gb|AC117734.13| Mus musculus chromosome 1, clone RP24-130L9, complete sequence Length = 167235 Score = 38.2 bits (19), Expect = 1.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 8 tgaaaactattttctttct 26 ||||||||||||||||||| Sbjct: 50814 tgaaaactattttctttct 50796
>gb|AC091499.2| Drosophila melanogaster clone BACR33L22, complete sequence Length = 182105 Score = 38.2 bits (19), Expect = 1.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 4 aaactgaaaactattttct 22 ||||||||||||||||||| Sbjct: 65020 aaactgaaaactattttct 65038
>gb|AC116111.17| Mus musculus chromosome 10, clone RP23-23B18, complete sequence Length = 211888 Score = 38.2 bits (19), Expect = 1.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 1 acaaaactgaaaactattt 19 ||||||||||||||||||| Sbjct: 88934 acaaaactgaaaactattt 88916
>gb|AC122199.4| Mus musculus BAC clone RP23-57C9 from chromosome 8, complete sequence Length = 202975 Score = 38.2 bits (19), Expect = 1.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 5 aactgaaaactattttctt 23 ||||||||||||||||||| Sbjct: 165312 aactgaaaactattttctt 165294
>gb|AC107864.10| Mus musculus chromosome 10, clone RP23-388A14, complete sequence Length = 207955 Score = 38.2 bits (19), Expect = 1.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 1 acaaaactgaaaactattt 19 ||||||||||||||||||| Sbjct: 190874 acaaaactgaaaactattt 190856
>gb|AC119242.5| Mus musculus chromosome 6, clone RP24-229C13, complete sequence Length = 189108 Score = 38.2 bits (19), Expect = 1.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 3 aaaactgaaaactattttc 21 ||||||||||||||||||| Sbjct: 113377 aaaactgaaaactattttc 113395
>gb|AC146573.21| Medicago truncatula clone mth2-145j1, complete sequence Length = 128992 Score = 38.2 bits (19), Expect = 1.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 8 tgaaaactattttctttct 26 ||||||||||||||||||| Sbjct: 28599 tgaaaactattttctttct 28581
>gb|AC156496.10| Mus musculus chromosome 7, clone RP24-246N21, complete sequence Length = 143815 Score = 38.2 bits (19), Expect = 1.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 9 gaaaactattttctttctg 27 ||||||||||||||||||| Sbjct: 47897 gaaaactattttctttctg 47915
>emb|AL513044.13| Human DNA sequence from clone RP11-187D4 on chromosome 1 Contains a CpG island, complete sequence Length = 111901 Score = 38.2 bits (19), Expect = 1.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 11 aaactattttctttctggc 29 ||||||||||||||||||| Sbjct: 75578 aaactattttctttctggc 75596
>emb|AL139182.24| Human DNA sequence from clone RP11-278A16 on chromosome 13 Contains a proteasome (prosome, macropain) activator subunit 2 (PA28 beta) (PSME2) pseudogene, complete sequence Length = 133202 Score = 38.2 bits (19), Expect = 1.9 Identities = 22/23 (95%) Strand = Plus / Plus Query: 24 tctggcatgatactgaagactat 46 ||||||||||||||||| ||||| Sbjct: 59730 tctggcatgatactgaaaactat 59752
>emb|AL136371.8| Human DNA sequence from clone RP11-110P20 on chromosome 1q31.1 Contains STSs, GSSs and a CpG island, complete sequence Length = 147784 Score = 38.2 bits (19), Expect = 1.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 1 acaaaactgaaaactattt 19 ||||||||||||||||||| Sbjct: 27102 acaaaactgaaaactattt 27084
>emb|AL121867.13|HSA405O21 Human DNA sequence from clone RP11-405O21 on chromosome Xq21.1-21.32 Contains STSs and GSSs, complete sequence Length = 131238 Score = 38.2 bits (19), Expect = 1.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 14 ctattttctttctggcatg 32 ||||||||||||||||||| Sbjct: 81693 ctattttctttctggcatg 81675
>emb|AJ829704.1| Escherichia coli genome fragment containing the GimA island, strain A0 34/86 Length = 55489 Score = 38.2 bits (19), Expect = 1.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 21 ctttctggcatgatactga 39 ||||||||||||||||||| Sbjct: 38586 ctttctggcatgatactga 38568
>emb|AJ271079.2|OEL271079 Oenothera elata subsp. hookeri chloroplast plastome I, complete sequence Length = 163935 Score = 38.2 bits (19), Expect = 1.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 8 tgaaaactattttctttct 26 ||||||||||||||||||| Sbjct: 131344 tgaaaactattttctttct 131362
>gb|AY129456.1| Drosophila melanogaster RE38281 full insert cDNA Length = 3809 Score = 38.2 bits (19), Expect = 1.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 4 aaactgaaaactattttct 22 ||||||||||||||||||| Sbjct: 3544 aaactgaaaactattttct 3562
>ref|NM_165951.1| Drosophila melanogaster scabrous CG17579-RB, transcript variant B (sca), mRNA Length = 3793 Score = 38.2 bits (19), Expect = 1.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 4 aaactgaaaactattttct 22 ||||||||||||||||||| Sbjct: 3544 aaactgaaaactattttct 3562
>gb|AC162947.2| Mus musculus BAC clone RP23-12D16 from chromosome 8, complete sequence Length = 230889 Score = 38.2 bits (19), Expect = 1.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 5 aactgaaaactattttctt 23 ||||||||||||||||||| Sbjct: 6844 aactgaaaactattttctt 6826
>gb|AE003821.4| Drosophila melanogaster chromosome 2R, section 29 of 73 of the complete sequence Length = 294168 Score = 38.2 bits (19), Expect = 1.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 4 aaactgaaaactattttct 22 ||||||||||||||||||| Sbjct: 280103 aaactgaaaactattttct 280121
>gb|AC157532.2| Pan troglodytes BAC clone CH251-305A6 from chromosome unknown, complete sequence Length = 204179 Score = 38.2 bits (19), Expect = 1.9 Identities = 22/23 (95%) Strand = Plus / Minus Query: 4 aaactgaaaactattttctttct 26 ||||||||||||| ||||||||| Sbjct: 13292 aaactgaaaactaatttctttct 13270
>gb|AC131532.7| Homo sapiens 12 BAC RP11-408B11 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 85167 Score = 38.2 bits (19), Expect = 1.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 11 aaactattttctttctggc 29 ||||||||||||||||||| Sbjct: 23613 aaactattttctttctggc 23631
>gb|AC007453.1|AC007453 Drosophila melanogaster, chromosome 2R, region 49C1-49D3, P1 clones DS04499, DS06146, and DS00455, complete sequence Length = 145055 Score = 38.2 bits (19), Expect = 1.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 4 aaactgaaaactattttct 22 ||||||||||||||||||| Sbjct: 101783 aaactgaaaactattttct 101801
>emb|AL355888.3|CNS05TCZ Human chromosome 14 DNA sequence BAC R-322L17 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 214852 Score = 38.2 bits (19), Expect = 1.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 11 aaactattttctttctggc 29 ||||||||||||||||||| Sbjct: 48765 aaactattttctttctggc 48783
>gb|AC113075.9| Mus musculus chromosome 19, clone RP23-278F24, complete sequence Length = 171837 Score = 38.2 bits (19), Expect = 1.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 10 aaaactattttctttctgg 28 ||||||||||||||||||| Sbjct: 6274 aaaactattttctttctgg 6256
>gb|AC127086.4| Mus musculus BAC clone RP24-540I5 from 8, complete sequence Length = 161316 Score = 38.2 bits (19), Expect = 1.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 5 aactgaaaactattttctt 23 ||||||||||||||||||| Sbjct: 9955 aactgaaaactattttctt 9937
>emb|AL833803.8| Mouse DNA sequence from clone RP23-244H7 on chromosome 2, complete sequence Length = 226251 Score = 38.2 bits (19), Expect = 1.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 3 aaaactgaaaactattttc 21 ||||||||||||||||||| Sbjct: 120872 aaaactgaaaactattttc 120890
>gb|AC153964.3| Mus musculus 10 BAC RP24-399H20 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 173453 Score = 38.2 bits (19), Expect = 1.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 1 acaaaactgaaaactattt 19 ||||||||||||||||||| Sbjct: 61 acaaaactgaaaactattt 43
>ref|NM_001035549.1| Arabidopsis thaliana 3'(2'),5'-bisphosphate nucleotidase/ inositol or phosphatidylinositol phosphatase AT3G02870 transcript variant AT3G02870.2 mRNA, complete cds Length = 1203 Score = 36.2 bits (18), Expect = 7.5 Identities = 18/18 (100%) Strand = Plus / Plus Query: 10 aaaactattttctttctg 27 |||||||||||||||||| Sbjct: 1100 aaaactattttctttctg 1117
>ref|NM_111155.2| Arabidopsis thaliana 3'(2'),5'-bisphosphate nucleotidase/ inositol or phosphatidylinositol phosphatase AT3G02870 transcript variant AT3G02870.1 mRNA, complete cds Length = 1209 Score = 36.2 bits (18), Expect = 7.5 Identities = 18/18 (100%) Strand = Plus / Plus Query: 10 aaaactattttctttctg 27 |||||||||||||||||| Sbjct: 1106 aaaactattttctttctg 1123
>gb|AC118260.7| Mus musculus chromosome 5, clone RP24-374B14, complete sequence Length = 158892 Score = 36.2 bits (18), Expect = 7.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 17 ttttctttctggcatgat 34 |||||||||||||||||| Sbjct: 4303 ttttctttctggcatgat 4286
>gb|BC048556.1| Mus musculus RIKEN cDNA 1500011K16 gene, mRNA (cDNA clone IMAGE:6600758) Length = 467 Score = 36.2 bits (18), Expect = 7.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 10 aaaactattttctttctg 27 |||||||||||||||||| Sbjct: 325 aaaactattttctttctg 308
>gb|AC151778.1| Ornithorhynchus anatinus chromosome UNK clone OABb-238A1, complete sequence Length = 168798 Score = 36.2 bits (18), Expect = 7.5 Identities = 27/30 (90%) Strand = Plus / Plus Query: 16 attttctttctggcatgatactgaagacta 45 ||||||| ||||||| ||||||||||||| Sbjct: 5756 attttctctctggcaaaatactgaagacta 5785
>gb|AY796305.1| Homo sapiens neurofibromin 1 (neurofibromatosis, von Recklinghausen disease, Watson disease) (NF1) gene, complete cds Length = 283312 Score = 36.2 bits (18), Expect = 7.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 3 aaaactgaaaactatttt 20 |||||||||||||||||| Sbjct: 73192 aaaactgaaaactatttt 73175
>gb|AC166816.2| Mus musculus chromosome 5, clone RP24-321O22, complete sequence Length = 156357 Score = 36.2 bits (18), Expect = 7.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 10 aaaactattttctttctg 27 |||||||||||||||||| Sbjct: 113184 aaaactattttctttctg 113167
>gb|AC134922.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0004D06, complete sequence Length = 157547 Score = 36.2 bits (18), Expect = 7.5 Identities = 21/22 (95%) Strand = Plus / Minus Query: 3 aaaactgaaaactattttcttt 24 |||||| ||||||||||||||| Sbjct: 129990 aaaacttaaaactattttcttt 129969
>gb|AC130659.11| Mus musculus chromosome 1, clone RP23-326C19, complete sequence Length = 172121 Score = 36.2 bits (18), Expect = 7.5 Identities = 18/18 (100%) Strand = Plus / Plus Query: 14 ctattttctttctggcat 31 |||||||||||||||||| Sbjct: 16931 ctattttctttctggcat 16948
>gb|AC164156.2| Mus musculus BAC clone RP24-549I8 from chromosome 1, complete sequence Length = 173764 Score = 36.2 bits (18), Expect = 7.5 Identities = 18/18 (100%) Strand = Plus / Plus Query: 3 aaaactgaaaactatttt 20 |||||||||||||||||| Sbjct: 132256 aaaactgaaaactatttt 132273
>emb|CR931798.8| Mouse DNA sequence from clone RP23-89A4 on chromosome 4, complete sequence Length = 83980 Score = 36.2 bits (18), Expect = 7.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 14 ctattttctttctggcat 31 |||||||||||||||||| Sbjct: 63178 ctattttctttctggcat 63161
>gb|AC018363.8|ATAC018363 Arabidopsis thaliana chromosome III BAC F13E7 genomic sequence, complete sequence Length = 100559 Score = 36.2 bits (18), Expect = 7.5 Identities = 18/18 (100%) Strand = Plus / Plus Query: 10 aaaactattttctttctg 27 |||||||||||||||||| Sbjct: 58696 aaaactattttctttctg 58713
>gb|AC099315.3| Papio anubis clone RP41-403I2, complete sequence Length = 167836 Score = 36.2 bits (18), Expect = 7.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 5 aactgaaaactattttct 22 |||||||||||||||||| Sbjct: 5105 aactgaaaactattttct 5088
>gb|AC111014.6| Mus musculus BAC clone RP24-371P8 from chromosome 10, complete sequence Length = 141953 Score = 36.2 bits (18), Expect = 7.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 8 tgaaaactattttctttc 25 |||||||||||||||||| Sbjct: 130567 tgaaaactattttctttc 130550
>ref|XM_548037.2| PREDICTED: Canis familiaris similar to CG4080-PA (LOC490914), mRNA Length = 2535 Score = 36.2 bits (18), Expect = 7.5 Identities = 18/18 (100%) Strand = Plus / Plus Query: 13 actattttctttctggca 30 |||||||||||||||||| Sbjct: 1370 actattttctttctggca 1387
>gb|AC124534.4| Mus musculus BAC clone RP23-316G7 from chromosome 1, complete sequence Length = 177675 Score = 36.2 bits (18), Expect = 7.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 3 aaaactgaaaactatttt 20 |||||||||||||||||| Sbjct: 142270 aaaactgaaaactatttt 142253
>emb|AL935308.10| Zebrafish DNA sequence from clone CH211-227H7 in linkage group 20, complete sequence Length = 175626 Score = 36.2 bits (18), Expect = 7.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 1 acaaaactgaaaactatt 18 |||||||||||||||||| Sbjct: 18508 acaaaactgaaaactatt 18491
>emb|AL672152.8| Mouse DNA sequence from clone RP23-426A16 on chromosome X, complete sequence Length = 200643 Score = 36.2 bits (18), Expect = 7.5 Identities = 18/18 (100%) Strand = Plus / Plus Query: 9 gaaaactattttctttct 26 |||||||||||||||||| Sbjct: 44116 gaaaactattttctttct 44133
>gb|AC104863.12| Mus musculus chromosome 6, clone RP23-109C11, complete sequence Length = 198321 Score = 36.2 bits (18), Expect = 7.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 4 aaactgaaaactattttc 21 |||||||||||||||||| Sbjct: 179839 aaactgaaaactattttc 179822
>gb|AC104296.4| Mus Musculus Strain 129S6/SvEvTac chromosome 2 BAC, RP22-161J17, complete sequence Length = 161984 Score = 36.2 bits (18), Expect = 7.5 Identities = 18/18 (100%) Strand = Plus / Plus Query: 10 aaaactattttctttctg 27 |||||||||||||||||| Sbjct: 3515 aaaactattttctttctg 3532
>emb|AL732374.14| Human DNA sequence from clone RP13-444K19 on chromosome X Contains a mitochondrial ribosomal protein S18C (MRPS18C) pseudogene, the 3' end of the gene for a novel protein similar to PHD finger protein 2 PHF2 and a CpG island, complete sequence Length = 224187 Score = 36.2 bits (18), Expect = 7.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 9 gaaaactattttctttct 26 |||||||||||||||||| Sbjct: 204163 gaaaactattttctttct 204146
>emb|AL590964.8| Human DNA sequence from clone RP11-505O14 on chromosome 6, complete sequence Length = 198644 Score = 36.2 bits (18), Expect = 7.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 14 ctattttctttctggcat 31 |||||||||||||||||| Sbjct: 84500 ctattttctttctggcat 84483
>emb|AL590290.5| Human DNA sequence from clone RP11-228O6 on chromosome 6, complete sequence Length = 114653 Score = 36.2 bits (18), Expect = 7.5 Identities = 18/18 (100%) Strand = Plus / Plus Query: 33 atactgaagactatatac 50 |||||||||||||||||| Sbjct: 93209 atactgaagactatatac 93226
>emb|AL358854.10| Human DNA sequence from clone RP11-424D14 on chromosome 1 Contains the 3' end of a novel gene, complete sequence Length = 85108 Score = 36.2 bits (18), Expect = 7.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 10 aaaactattttctttctg 27 |||||||||||||||||| Sbjct: 72185 aaaactattttctttctg 72168
>emb|AL355531.16| Human DNA sequence from clone RP11-300B2 on chromosome 10 Contains the 5' end of the MGMT gene for O-6-methylguanine-DNA methyltransferase, complete sequence Length = 213887 Score = 36.2 bits (18), Expect = 7.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 1 acaaaactgaaaactatt 18 |||||||||||||||||| Sbjct: 125478 acaaaactgaaaactatt 125461
>emb|AL354737.12| Human DNA sequence from clone RP11-569H20 on chromosome X, complete sequence Length = 172991 Score = 36.2 bits (18), Expect = 7.5 Identities = 18/18 (100%) Strand = Plus / Plus Query: 1 acaaaactgaaaactatt 18 |||||||||||||||||| Sbjct: 125543 acaaaactgaaaactatt 125560
>emb|AL161629.10| Human DNA sequence from clone RP11-406A20 on chromosome 9q21.33-22.2 Contains two novel genes and a interleukin 6 receptor (IL6R) pseudogene, complete sequence Length = 160341 Score = 36.2 bits (18), Expect = 7.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 14 ctattttctttctggcat 31 |||||||||||||||||| Sbjct: 155658 ctattttctttctggcat 155641
>gb|AC162295.3| Mus musculus chromosome 1, clone RP24-232K22, complete sequence Length = 180957 Score = 36.2 bits (18), Expect = 7.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 14 ctattttctttctggcat 31 |||||||||||||||||| Sbjct: 77112 ctattttctttctggcat 77095
>emb|AL024505.1|HS112L6 Human DNA sequence from clone RP1-112L6 on chromosome 6q16, complete sequence Length = 144097 Score = 36.2 bits (18), Expect = 7.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 9 gaaaactattttctttct 26 |||||||||||||||||| Sbjct: 133518 gaaaactattttctttct 133501
>emb|BX323451.12| Zebrafish DNA sequence from clone DKEY-49H9 in linkage group 8, complete sequence Length = 211489 Score = 36.2 bits (18), Expect = 7.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 3 aaaactgaaaactatttt 20 |||||||||||||||||| Sbjct: 14205 aaaactgaaaactatttt 14188
>gb|AC006518.17| Homo sapiens 12 BAC RPCI11-144O23 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 173735 Score = 36.2 bits (18), Expect = 7.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 9 gaaaactattttctttct 26 |||||||||||||||||| Sbjct: 35188 gaaaactattttctttct 35171
>emb|AL837505.21| Mouse DNA sequence from clone RP23-181N6 on chromosome 4, complete sequence Length = 186045 Score = 36.2 bits (18), Expect = 7.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 3 aaaactgaaaactatttt 20 |||||||||||||||||| Sbjct: 156258 aaaactgaaaactatttt 156241
>emb|BX649406.10| Zebrafish DNA sequence from clone CH211-203N20 in linkage group 4 Contains two CpG islands, complete sequence Length = 141237 Score = 36.2 bits (18), Expect = 7.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 8 tgaaaactattttctttc 25 |||||||||||||||||| Sbjct: 49163 tgaaaactattttctttc 49146
>emb|BX927179.9| Zebrafish DNA sequence from clone CH211-194N20 in linkage group 5, complete sequence Length = 121960 Score = 36.2 bits (18), Expect = 7.5 Identities = 18/18 (100%) Strand = Plus / Plus Query: 4 aaactgaaaactattttc 21 |||||||||||||||||| Sbjct: 105155 aaactgaaaactattttc 105172
>gb|AC025035.15| Homo sapiens 12 BAC RP11-121E16 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 165440 Score = 36.2 bits (18), Expect = 7.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 9 gaaaactattttctttct 26 |||||||||||||||||| Sbjct: 107308 gaaaactattttctttct 107291
>gb|AF286884.4| Homo sapiens chromosome 8 clone RP11-597D18 map 8p21-p11, complete sequence Length = 207519 Score = 36.2 bits (18), Expect = 7.5 Identities = 18/18 (100%) Strand = Plus / Plus Query: 14 ctattttctttctggcat 31 |||||||||||||||||| Sbjct: 100934 ctattttctttctggcat 100951
>gb|AC103840.2| Homo sapiens chromosome 8, clone RP11-317N12, complete sequence Length = 172361 Score = 36.2 bits (18), Expect = 7.5 Identities = 18/18 (100%) Strand = Plus / Plus Query: 14 ctattttctttctggcat 31 |||||||||||||||||| Sbjct: 158436 ctattttctttctggcat 158453
>gb|DQ173282.1| Ictalurus punctatus CC chemokine SCYA108 gene, complete cds Length = 2093 Score = 36.2 bits (18), Expect = 7.5 Identities = 18/18 (100%) Strand = Plus / Plus Query: 4 aaactgaaaactattttc 21 |||||||||||||||||| Sbjct: 2072 aaactgaaaactattttc 2089
>gb|AC079915.7| Homo sapiens chromosome , clone RP11-142O6, complete sequence Length = 145148 Score = 36.2 bits (18), Expect = 7.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 3 aaaactgaaaactatttt 20 |||||||||||||||||| Sbjct: 87475 aaaactgaaaactatttt 87458
>gb|AC103588.2| Homo sapiens chromosome 3 clone RP11-640H5, complete sequence Length = 208670 Score = 36.2 bits (18), Expect = 7.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 3 aaaactgaaaactatttt 20 |||||||||||||||||| Sbjct: 176998 aaaactgaaaactatttt 176981
>gb|AC087855.6| Homo sapiens chromosome 8, clone RP11-431M3, complete sequence Length = 161256 Score = 36.2 bits (18), Expect = 7.5 Identities = 18/18 (100%) Strand = Plus / Plus Query: 14 ctattttctttctggcat 31 |||||||||||||||||| Sbjct: 46286 ctattttctttctggcat 46303
>gb|AC087671.9| Homo sapiens chromosome 8, clone RP11-597D18, complete sequence Length = 207503 Score = 36.2 bits (18), Expect = 7.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 14 ctattttctttctggcat 31 |||||||||||||||||| Sbjct: 106585 ctattttctttctggcat 106568
>gb|AC025741.5| Homo sapiens BAC clone RP11-501E14 from 4, complete sequence Length = 190221 Score = 36.2 bits (18), Expect = 7.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 11 aaactattttctttctgg 28 |||||||||||||||||| Sbjct: 155375 aaactattttctttctgg 155358
>gb|AC093411.2| Homo sapiens chromosome 3 clone RP11-1C5, complete sequence Length = 173481 Score = 36.2 bits (18), Expect = 7.5 Identities = 18/18 (100%) Strand = Plus / Plus Query: 3 aaaactgaaaactatttt 20 |||||||||||||||||| Sbjct: 97690 aaaactgaaaactatttt 97707
>dbj|AK165423.1| Mus musculus adult male kidney cDNA, RIKEN full-length enriched library, clone:F520011M10 product:hypothetical protein, full insert sequence Length = 719 Score = 36.2 bits (18), Expect = 7.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 10 aaaactattttctttctg 27 |||||||||||||||||| Sbjct: 316 aaaactattttctttctg 299
>dbj|AK008527.1| Mus musculus adult male small intestine cDNA, RIKEN full-length enriched library, clone:2010305H07 product:RIKEN cDNA 1500011K16 gene, full insert sequence Length = 443 Score = 36.2 bits (18), Expect = 7.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 10 aaaactattttctttctg 27 |||||||||||||||||| Sbjct: 331 aaaactattttctttctg 314
>dbj|AK005218.1| Mus musculus adult male cerebellum cDNA, RIKEN full-length enriched library, clone:1500011K16 product:unclassifiable, full insert sequence Length = 468 Score = 36.2 bits (18), Expect = 7.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 10 aaaactattttctttctg 27 |||||||||||||||||| Sbjct: 336 aaaactattttctttctg 319
>dbj|AK027942.1| Mus musculus 18-day embryo whole body cDNA, RIKEN full-length enriched library, clone:1110029C01 product:hypothetical protein, full insert sequence Length = 801 Score = 36.2 bits (18), Expect = 7.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 10 aaaactattttctttctg 27 |||||||||||||||||| Sbjct: 331 aaaactattttctttctg 314
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 36.2 bits (18), Expect = 7.5 Identities = 21/22 (95%) Strand = Plus / Minus Query: 3 aaaactgaaaactattttcttt 24 |||||| ||||||||||||||| Sbjct: 26416555 aaaacttaaaactattttcttt 26416534
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 36.2 bits (18), Expect = 7.5 Identities = 18/18 (100%) Strand = Plus / Plus Query: 9 gaaaactattttctttct 26 |||||||||||||||||| Sbjct: 14414153 gaaaactattttctttct 14414170
>gb|AC055764.23| Homo sapiens 3 BAC RP11-803P9 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 74486 Score = 36.2 bits (18), Expect = 7.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 8 tgaaaactattttctttc 25 |||||||||||||||||| Sbjct: 18406 tgaaaactattttctttc 18389
>gb|AC068042.5| Homo sapiens BAC clone RP11-535B12 from 2, complete sequence Length = 172617 Score = 36.2 bits (18), Expect = 7.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 3 aaaactgaaaactatttt 20 |||||||||||||||||| Sbjct: 7575 aaaactgaaaactatttt 7558
>gb|AC007250.2| Homo sapiens BAC clone RP11-334G22 from 2, complete sequence Length = 180557 Score = 36.2 bits (18), Expect = 7.5 Identities = 25/26 (96%), Gaps = 1/26 (3%) Strand = Plus / Plus Query: 4 aaactgaaaactattttctttctggc 29 |||||||||| ||||||||||||||| Sbjct: 176577 aaactgaaaa-tattttctttctggc 176601
>gb|AC095349.10| Homo sapiens 3 BAC RP11-714D16 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 182618 Score = 36.2 bits (18), Expect = 7.5 Identities = 18/18 (100%) Strand = Plus / Plus Query: 3 aaaactgaaaactatttt 20 |||||||||||||||||| Sbjct: 102393 aaaactgaaaactatttt 102410
>gb|AC007823.38| Homo sapiens 3 BAC RP11-255C15 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 127759 Score = 36.2 bits (18), Expect = 7.5 Identities = 18/18 (100%) Strand = Plus / Plus Query: 2 caaaactgaaaactattt 19 |||||||||||||||||| Sbjct: 83467 caaaactgaaaactattt 83484
>gb|AC078809.9| Homo sapiens 3 BAC RP11-600G3 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 162646 Score = 36.2 bits (18), Expect = 7.5 Identities = 18/18 (100%) Strand = Plus / Plus Query: 4 aaactgaaaactattttc 21 |||||||||||||||||| Sbjct: 143566 aaactgaaaactattttc 143583
>gb|AC157840.3| Aotus nancymaae clone CH258-147H21, complete sequence Length = 108957 Score = 36.2 bits (18), Expect = 7.5 Identities = 18/18 (100%) Strand = Plus / Plus Query: 2 caaaactgaaaactattt 19 |||||||||||||||||| Sbjct: 75615 caaaactgaaaactattt 75632
>gb|AC004222.1|AC004222 Homo sapiens chromosome 17, clone HCIT499I20, complete sequence Length = 119136 Score = 36.2 bits (18), Expect = 7.5 Identities = 18/18 (100%) Strand = Plus / Plus Query: 3 aaaactgaaaactatttt 20 |||||||||||||||||| Sbjct: 94626 aaaactgaaaactatttt 94643
>dbj|AP003312.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0025H06 Length = 151547 Score = 36.2 bits (18), Expect = 7.5 Identities = 18/18 (100%) Strand = Plus / Plus Query: 9 gaaaactattttctttct 26 |||||||||||||||||| Sbjct: 75550 gaaaactattttctttct 75567
>gb|AC153610.3| Mus musculus 6 BAC RP23-271E2 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 177392 Score = 36.2 bits (18), Expect = 7.5 Identities = 24/26 (92%) Strand = Plus / Plus Query: 4 aaactgaaaactattttctttctggc 29 ||||| ||| |||||||||||||||| Sbjct: 162598 aaacttaaagctattttctttctggc 162623
>dbj|AB020754.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MYN8 Length = 54528 Score = 36.2 bits (18), Expect = 7.5 Identities = 18/18 (100%) Strand = Plus / Plus Query: 3 aaaactgaaaactatttt 20 |||||||||||||||||| Sbjct: 9405 aaaactgaaaactatttt 9422
>gb|AC153611.12| Mus musculus 6 BAC RP23-110P14 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 174538 Score = 36.2 bits (18), Expect = 7.5 Identities = 24/26 (92%) Strand = Plus / Minus Query: 4 aaactgaaaactattttctttctggc 29 ||||| ||| |||||||||||||||| Sbjct: 163554 aaacttaaagctattttctttctggc 163529
>dbj|AK107288.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-126-B08, full insert sequence Length = 1407 Score = 36.2 bits (18), Expect = 7.5 Identities = 18/18 (100%) Strand = Plus / Plus Query: 9 gaaaactattttctttct 26 |||||||||||||||||| Sbjct: 1223 gaaaactattttctttct 1240
>gb|AC134339.6| Mus musculus BAC clone RP23-5F21 from 8, complete sequence Length = 229073 Score = 36.2 bits (18), Expect = 7.5 Identities = 18/18 (100%) Strand = Plus / Plus Query: 1 acaaaactgaaaactatt 18 |||||||||||||||||| Sbjct: 49579 acaaaactgaaaactatt 49596
>emb|CT025857.10| Mouse DNA sequence from clone RP24-315F22 on chromosome 14, complete sequence Length = 107710 Score = 36.2 bits (18), Expect = 7.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 3 aaaactgaaaactatttt 20 |||||||||||||||||| Sbjct: 106329 aaaactgaaaactatttt 106312
>gb|AY449462.1| Oikopleura dioica clone BACOIKO006 3xn11, complete sequence Length = 166506 Score = 36.2 bits (18), Expect = 7.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 15 tattttctttctggcatg 32 |||||||||||||||||| Sbjct: 45867 tattttctttctggcatg 45850
>emb|BX004808.5| Zebrafish DNA sequence from clone CH211-51B23 in linkage group 16, complete sequence Length = 184760 Score = 36.2 bits (18), Expect = 7.5 Identities = 18/18 (100%) Strand = Plus / Plus Query: 1 acaaaactgaaaactatt 18 |||||||||||||||||| Sbjct: 170763 acaaaactgaaaactatt 170780
>gb|AC160999.3| Mus musculus BAC clone RP23-58I16 from chromosome 14, complete sequence Length = 222122 Score = 36.2 bits (18), Expect = 7.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 3 aaaactgaaaactatttt 20 |||||||||||||||||| Sbjct: 43665 aaaactgaaaactatttt 43648
>emb|BX005355.10| Zebrafish DNA sequence from clone CH211-222M2, complete sequence Length = 227182 Score = 36.2 bits (18), Expect = 7.5 Identities = 18/18 (100%) Strand = Plus / Plus Query: 3 aaaactgaaaactatttt 20 |||||||||||||||||| Sbjct: 7765 aaaactgaaaactatttt 7782
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 36.2 bits (18), Expect = 7.5 Identities = 21/22 (95%) Strand = Plus / Minus Query: 3 aaaactgaaaactattttcttt 24 |||||| ||||||||||||||| Sbjct: 26742416 aaaacttaaaactattttcttt 26742395
>emb|AL954359.5| Zebrafish DNA sequence from clone CH211-270N8, complete sequence Length = 167392 Score = 36.2 bits (18), Expect = 7.5 Identities = 18/18 (100%) Strand = Plus / Plus Query: 10 aaaactattttctttctg 27 |||||||||||||||||| Sbjct: 134737 aaaactattttctttctg 134754
>ref|NM_175125.2| Mus musculus RIKEN cDNA 1500011K16 gene (1500011K16Rik), mRNA Length = 801 Score = 36.2 bits (18), Expect = 7.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 10 aaaactattttctttctg 27 |||||||||||||||||| Sbjct: 331 aaaactattttctttctg 314
>gb|AC134457.4| Mus musculus BAC clone RP23-340O18 from 10, complete sequence Length = 186273 Score = 36.2 bits (18), Expect = 7.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 8 tgaaaactattttctttc 25 |||||||||||||||||| Sbjct: 23211 tgaaaactattttctttc 23194
>emb|AL772223.7| Mouse DNA sequence from clone RP23-372J10 on chromosome 4, complete sequence Length = 211954 Score = 36.2 bits (18), Expect = 7.5 Identities = 18/18 (100%) Strand = Plus / Plus Query: 7 ctgaaaactattttcttt 24 |||||||||||||||||| Sbjct: 205854 ctgaaaactattttcttt 205871
>gb|AC169792.2| Rhesus Macaque BAC CH250-117K11 (Children's Hospital Oakland Research Institute Rhesus macaque Adult Male BAC Library) complete sequence Length = 186393 Score = 36.2 bits (18), Expect = 7.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 9 gaaaactattttctttct 26 |||||||||||||||||| Sbjct: 83011 gaaaactattttctttct 82994
>gb|AC107050.3| Homo sapiens BAC clone RP11-182A9 from 4, complete sequence Length = 167699 Score = 36.2 bits (18), Expect = 7.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 18 tttctttctggcatgata 35 |||||||||||||||||| Sbjct: 98259 tttctttctggcatgata 98242
>emb|AL844204.3| Mouse DNA sequence from clone RP23-189N15 on chromosome 2, complete sequence Length = 162981 Score = 36.2 bits (18), Expect = 7.5 Identities = 18/18 (100%) Strand = Plus / Plus Query: 10 aaaactattttctttctg 27 |||||||||||||||||| Sbjct: 141583 aaaactattttctttctg 141600 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 887,938 Number of Sequences: 3902068 Number of extensions: 887938 Number of successful extensions: 253332 Number of sequences better than 10.0: 113 Number of HSP's better than 10.0 without gapping: 112 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 252730 Number of HSP's gapped (non-prelim): 603 length of query: 54 length of database: 17,233,045,268 effective HSP length: 20 effective length of query: 34 effective length of database: 17,155,003,908 effective search space: 583270132872 effective search space used: 583270132872 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 18 (36.2 bits)
