Clone Name | rbastl21c12 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK044396.1| Mus musculus adult retina cDNA, RIKEN full-length enriched library, clone:A930010L21 product:RIKEN cDNA 1700017B05 gene, full insert sequence Length = 4149 Score = 44.1 bits (22), Expect = 0.27 Identities = 22/22 (100%) Strand = Plus / Minus Query: 176 ttacttcaggggatttctgtga 197 |||||||||||||||||||||| Sbjct: 2075 ttacttcaggggatttctgtga 2054
>emb|AL355301.9| Human DNA sequence from clone RP11-594J24 on chromosome 10 Contains the 5' end of gene FLJ37160 and twp CpG islands, complete sequence Length = 135538 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 120 ttacttgatatttcttttggc 140 ||||||||||||||||||||| Sbjct: 84524 ttacttgatatttcttttggc 84544
>gb|AC104932.22| Mus musculus chromosome 3, clone RP24-337A16, complete sequence Length = 184718 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 186 ggatttctgtgaggtcaagg 205 |||||||||||||||||||| Sbjct: 138749 ggatttctgtgaggtcaagg 138730
>gb|AC163092.4| Mus musculus chromosome 3, clone RP24-212F17, complete sequence Length = 150636 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 186 ggatttctgtgaggtcaagg 205 |||||||||||||||||||| Sbjct: 31340 ggatttctgtgaggtcaagg 31321
>gb|AC145198.3| Mus musculus BAC clone RP23-396H3 from chromosome 16, complete sequence Length = 201219 Score = 40.1 bits (20), Expect = 4.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 23 ctatagttgaaatttgacaggcct 46 ||||| |||||||||||||||||| Sbjct: 51821 ctatatttgaaatttgacaggcct 51798
>gb|AC092448.6| Homo sapiens BAC clone RP11-776E7 from 7, complete sequence Length = 169788 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 109 ctggaataagcttacttgat 128 |||||||||||||||||||| Sbjct: 108352 ctggaataagcttacttgat 108333
>gb|AC141115.22| Medicago truncatula clone mth2-16b23, complete sequence Length = 126187 Score = 40.1 bits (20), Expect = 4.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 272 taaatttgtgtggagcttccacatataa 299 ||||||| |||||||| ||||||||||| Sbjct: 42412 taaatttttgtggagcatccacatataa 42439
>gb|AC163628.5| Mus musculus BAC clone RP23-138F21 from chromosome 3, complete sequence Length = 194400 Score = 40.1 bits (20), Expect = 4.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 182 caggggatttctgtgaggtcaagg 205 ||||||||||||||||| |||||| Sbjct: 11243 caggggatttctgtgagttcaagg 11220
>emb|AL646095.27| Mouse DNA sequence from clone RP23-17P18 on chromosome 11 Contains the 3' end of the Asb3 gene for ankyrin repeat and SOCS box-containing protein 3 and two zinc finger protein pseudogenes, complete sequence Length = 173655 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 186 ggatttctgtgaggtcaagg 205 |||||||||||||||||||| Sbjct: 109932 ggatttctgtgaggtcaagg 109951
>gb|AC159101.2| Mus musculus BAC clone RP24-212G22 from chromosome 9, complete sequence Length = 183017 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 187 gatttctgtgaggtcaaggt 206 |||||||||||||||||||| Sbjct: 87237 gatttctgtgaggtcaaggt 87218
>gb|AC114928.2| Homo sapiens chromosome 5 clone CTC-384G19, complete sequence Length = 45530 Score = 40.1 bits (20), Expect = 4.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 94 gtctgcccttccttgctggaataa 117 |||||||||||||| ||||||||| Sbjct: 34904 gtctgcccttccttcctggaataa 34927
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 20 aacctatagttgaaatttga 39 |||||||||||||||||||| Sbjct: 28589043 aacctatagttgaaatttga 28589062
>emb|AL954678.8| Zebrafish DNA sequence from clone CH211-207E14 in linkage group 9, complete sequence Length = 219500 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 113 aataagcttacttgatattt 132 |||||||||||||||||||| Sbjct: 136126 aataagcttacttgatattt 136107
>dbj|AP003770.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0550B04 Length = 150131 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 20 aacctatagttgaaatttga 39 |||||||||||||||||||| Sbjct: 80521 aacctatagttgaaatttga 80540
>emb|AL844842.29| Mouse DNA sequence from clone RP23-354G20 on chromosome 2, complete sequence Length = 228433 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 186 ggatttctgtgaggtcaagg 205 |||||||||||||||||||| Sbjct: 38930 ggatttctgtgaggtcaagg 38949
>gb|AY110716.1| Zea mays CL29332_1 mRNA sequence Length = 593 Score = 40.1 bits (20), Expect = 4.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 149 ggaagcaaatatcatctccaagaa 172 |||||||||||||| ||||||||| Sbjct: 470 ggaagcaaatatcagctccaagaa 493
>gb|AC121315.14| Mus musculus chromosome 3, clone RP24-488I7, complete sequence Length = 153807 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 186 ggatttctgtgaggtcaagg 205 |||||||||||||||||||| Sbjct: 51772 ggatttctgtgaggtcaagg 51753
>gb|AC131122.4| Mus musculus BAC clone RP24-553B2 from 3, complete sequence Length = 183750 Score = 40.1 bits (20), Expect = 4.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 182 caggggatttctgtgaggtcaagg 205 ||||||||||||||||| |||||| Sbjct: 156969 caggggatttctgtgagttcaagg 156992
>gb|AC122247.5| Mus musculus BAC clone RP23-155D8 from 16, complete sequence Length = 208505 Score = 40.1 bits (20), Expect = 4.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 23 ctatagttgaaatttgacaggcct 46 ||||| |||||||||||||||||| Sbjct: 176320 ctatatttgaaatttgacaggcct 176297 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,321,543 Number of Sequences: 3902068 Number of extensions: 3321543 Number of successful extensions: 59501 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 19 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 59456 Number of HSP's gapped (non-prelim): 45 length of query: 316 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 294 effective length of database: 17,147,199,772 effective search space: 5041276732968 effective search space used: 5041276732968 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)