ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl21c12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK044396.1| Mus musculus adult retina cDNA, RIKEN full-lengt... 44 0.27
2emb|AL355301.9| Human DNA sequence from clone RP11-594J24 on chr... 42 1.1
3gb|AC104932.22| Mus musculus chromosome 3, clone RP24-337A16, co... 40 4.2
4gb|AC163092.4| Mus musculus chromosome 3, clone RP24-212F17, com... 40 4.2
5gb|AC145198.3| Mus musculus BAC clone RP23-396H3 from chromosome... 40 4.2
6gb|AC092448.6| Homo sapiens BAC clone RP11-776E7 from 7, complet... 40 4.2
7gb|AC141115.22| Medicago truncatula clone mth2-16b23, complete s... 40 4.2
8gb|AC163628.5| Mus musculus BAC clone RP23-138F21 from chromosom... 40 4.2
9emb|AL646095.27| Mouse DNA sequence from clone RP23-17P18 on chr... 40 4.2
10gb|AC159101.2| Mus musculus BAC clone RP24-212G22 from chromosom... 40 4.2
11gb|AC114928.2| Homo sapiens chromosome 5 clone CTC-384G19, compl... 40 4.2
12dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.2
13emb|AL954678.8| Zebrafish DNA sequence from clone CH211-207E14 i... 40 4.2
14dbj|AP003770.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.2
15emb|AL844842.29| Mouse DNA sequence from clone RP23-354G20 on ch... 40 4.2
16gb|AY110716.1| Zea mays CL29332_1 mRNA sequence 40 4.2
17gb|AC121315.14| Mus musculus chromosome 3, clone RP24-488I7, com... 40 4.2
18gb|AC131122.4| Mus musculus BAC clone RP24-553B2 from 3, complet... 40 4.2
19gb|AC122247.5| Mus musculus BAC clone RP23-155D8 from 16, comple... 40 4.2

>dbj|AK044396.1| Mus musculus adult retina cDNA, RIKEN full-length enriched library,
            clone:A930010L21 product:RIKEN cDNA 1700017B05 gene, full
            insert sequence
          Length = 4149

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 176  ttacttcaggggatttctgtga 197
            ||||||||||||||||||||||
Sbjct: 2075 ttacttcaggggatttctgtga 2054



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>emb|AL355301.9| Human DNA sequence from clone RP11-594J24 on chromosome 10 Contains the
             5' end of gene FLJ37160 and twp CpG islands, complete
             sequence
          Length = 135538

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 120   ttacttgatatttcttttggc 140
             |||||||||||||||||||||
Sbjct: 84524 ttacttgatatttcttttggc 84544



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>gb|AC104932.22| Mus musculus chromosome 3, clone RP24-337A16, complete sequence
          Length = 184718

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 186    ggatttctgtgaggtcaagg 205
              ||||||||||||||||||||
Sbjct: 138749 ggatttctgtgaggtcaagg 138730



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>gb|AC163092.4| Mus musculus chromosome 3, clone RP24-212F17, complete sequence
          Length = 150636

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 186   ggatttctgtgaggtcaagg 205
             ||||||||||||||||||||
Sbjct: 31340 ggatttctgtgaggtcaagg 31321



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>gb|AC145198.3| Mus musculus BAC clone RP23-396H3 from chromosome 16, complete sequence
          Length = 201219

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 23    ctatagttgaaatttgacaggcct 46
             ||||| ||||||||||||||||||
Sbjct: 51821 ctatatttgaaatttgacaggcct 51798



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>gb|AC092448.6| Homo sapiens BAC clone RP11-776E7 from 7, complete sequence
          Length = 169788

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 109    ctggaataagcttacttgat 128
              ||||||||||||||||||||
Sbjct: 108352 ctggaataagcttacttgat 108333



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>gb|AC141115.22| Medicago truncatula clone mth2-16b23, complete sequence
          Length = 126187

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 272   taaatttgtgtggagcttccacatataa 299
             ||||||| |||||||| |||||||||||
Sbjct: 42412 taaatttttgtggagcatccacatataa 42439



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>gb|AC163628.5| Mus musculus BAC clone RP23-138F21 from chromosome 3, complete sequence
          Length = 194400

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 182   caggggatttctgtgaggtcaagg 205
             ||||||||||||||||| ||||||
Sbjct: 11243 caggggatttctgtgagttcaagg 11220



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>emb|AL646095.27| Mouse DNA sequence from clone RP23-17P18 on chromosome 11 Contains the 3'
              end of the Asb3 gene for ankyrin repeat and SOCS
              box-containing protein 3 and two zinc finger protein
              pseudogenes, complete sequence
          Length = 173655

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 186    ggatttctgtgaggtcaagg 205
              ||||||||||||||||||||
Sbjct: 109932 ggatttctgtgaggtcaagg 109951



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>gb|AC159101.2| Mus musculus BAC clone RP24-212G22 from chromosome 9, complete sequence
          Length = 183017

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 187   gatttctgtgaggtcaaggt 206
             ||||||||||||||||||||
Sbjct: 87237 gatttctgtgaggtcaaggt 87218



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>gb|AC114928.2| Homo sapiens chromosome 5 clone CTC-384G19, complete sequence
          Length = 45530

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 94    gtctgcccttccttgctggaataa 117
             |||||||||||||| |||||||||
Sbjct: 34904 gtctgcccttccttcctggaataa 34927



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 20       aacctatagttgaaatttga 39
                ||||||||||||||||||||
Sbjct: 28589043 aacctatagttgaaatttga 28589062



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>emb|AL954678.8| Zebrafish DNA sequence from clone CH211-207E14 in linkage group 9,
              complete sequence
          Length = 219500

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 113    aataagcttacttgatattt 132
              ||||||||||||||||||||
Sbjct: 136126 aataagcttacttgatattt 136107



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>dbj|AP003770.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0550B04
          Length = 150131

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 20    aacctatagttgaaatttga 39
             ||||||||||||||||||||
Sbjct: 80521 aacctatagttgaaatttga 80540



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>emb|AL844842.29| Mouse DNA sequence from clone RP23-354G20 on chromosome 2, complete
             sequence
          Length = 228433

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 186   ggatttctgtgaggtcaagg 205
             ||||||||||||||||||||
Sbjct: 38930 ggatttctgtgaggtcaagg 38949



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>gb|AY110716.1| Zea mays CL29332_1 mRNA sequence
          Length = 593

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 149 ggaagcaaatatcatctccaagaa 172
           |||||||||||||| |||||||||
Sbjct: 470 ggaagcaaatatcagctccaagaa 493



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>gb|AC121315.14| Mus musculus chromosome 3, clone RP24-488I7, complete sequence
          Length = 153807

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 186   ggatttctgtgaggtcaagg 205
             ||||||||||||||||||||
Sbjct: 51772 ggatttctgtgaggtcaagg 51753



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>gb|AC131122.4| Mus musculus BAC clone RP24-553B2 from 3, complete sequence
          Length = 183750

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 182    caggggatttctgtgaggtcaagg 205
              ||||||||||||||||| ||||||
Sbjct: 156969 caggggatttctgtgagttcaagg 156992



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>gb|AC122247.5| Mus musculus BAC clone RP23-155D8 from 16, complete sequence
          Length = 208505

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 23     ctatagttgaaatttgacaggcct 46
              ||||| ||||||||||||||||||
Sbjct: 176320 ctatatttgaaatttgacaggcct 176297


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,321,543
Number of Sequences: 3902068
Number of extensions: 3321543
Number of successful extensions: 59501
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 59456
Number of HSP's gapped (non-prelim): 45
length of query: 316
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 294
effective length of database: 17,147,199,772
effective search space: 5041276732968
effective search space used: 5041276732968
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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