ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl21c11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PELI_DROME (O77237) Protein pellino 30 1.6
2CELR1_HUMAN (Q9NYQ6) Cadherin EGF LAG seven-pass G-type receptor... 28 4.5
3YIHP_ECOLI (P32137) Inner membrane symporter yihP 28 7.7

>PELI_DROME (O77237) Protein pellino|
          Length = 424

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 10/47 (21%)
 Frame = -3

Query: 217 YVVVGSAAFTFNPSGHL---------CNV-IPVSFFGCQAYVSFCAS 107
           YV VG+  + FNP GH+          NV IP    G QA   FCA+
Sbjct: 360 YVDVGAPTYAFNPCGHMATEKTVKYWANVEIPHGTNGFQAVCPFCAT 406



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>CELR1_HUMAN (Q9NYQ6) Cadherin EGF LAG seven-pass G-type receptor 1 precursor|
            (Flamingo homolog 2) (hFmi2)
          Length = 3014

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 18/39 (46%), Positives = 22/39 (56%)
 Frame = -3

Query: 265  HVRHRFLFVTLFLSQLYVVVGSAAFTFNPSGHLCNVIPV 149
            H  H+ L V LFLSQL  V+G    T NP   LC V+ +
Sbjct: 2501 HSIHKHLAVALFLSQLVFVIGINQ-TENP--FLCTVVAI 2536



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>YIHP_ECOLI (P32137) Inner membrane symporter yihP|
          Length = 461

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 12/73 (16%)
 Frame = -2

Query: 188 IQPFRASMQRHPCFLFWMSSLCII------LCIDIFFVRYVVR-AI*M*YRKFFGR---- 42
           +Q FRA     P F+  +++LC +      L I +++ +YV+   I + Y  FF      
Sbjct: 232 LQSFRAIAGNRPLFILCIANLCTLGAFNVKLAIQVYYTQYVLNDPILLSYMGFFSMGCIF 291

Query: 41  -FLFTEPANDRFF 6
             +F  PA+ R F
Sbjct: 292 IGVFLMPASVRRF 304


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,158,046
Number of Sequences: 219361
Number of extensions: 912609
Number of successful extensions: 3289
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3285
length of database: 80,573,946
effective HSP length: 76
effective length of database: 63,902,510
effective search space used: 1533660240
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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