ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbastl21c08 |
|---|---|
| Clone Library Name | barley_pub |
>LOX4_ORYSA (Q53RB0) Probable lipoxygenase 4 (EC 1.13.11.12)| Length = 877 Score = 41.6 bits (96), Expect = 5e-04 Identities = 19/25 (76%), Positives = 20/25 (80%) Frame = -1 Query: 291 PNTSDANGEKALGLTAMGIPNSVSI 217 PNTSD EK GLTAMGIPNS+SI Sbjct: 853 PNTSDVTKEKGQGLTAMGIPNSISI 877
>LOX2_ORYSA (P29250) Lipoxygenase 2 (EC 1.13.11.12) (Lipoxygenase L-2)| Length = 870 Score = 34.7 bits (78), Expect = 0.064 Identities = 17/25 (68%), Positives = 20/25 (80%) Frame = -1 Query: 291 PNTSDANGEKALGLTAMGIPNSVSI 217 PNTSD G+ A GL+A GIPNS+SI Sbjct: 847 PNTSDLKGDAA-GLSARGIPNSISI 870
>LOX1_HORVU (P29114) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 34.7 bits (78), Expect = 0.064 Identities = 18/25 (72%), Positives = 19/25 (76%) Frame = -1 Query: 291 PNTSDANGEKALGLTAMGIPNSVSI 217 PNTSD G A GLTA GIPNS+SI Sbjct: 839 PNTSDHKGAAA-GLTAKGIPNSISI 862
>LOX3_ORYSA (Q7G794) Putative lipoxygenase 3 (EC 1.13.11.12)| Length = 866 Score = 34.7 bits (78), Expect = 0.064 Identities = 17/25 (68%), Positives = 19/25 (76%) Frame = -1 Query: 291 PNTSDANGEKALGLTAMGIPNSVSI 217 PNTSD G A G+TA GIPNS+SI Sbjct: 843 PNTSDVTGAAA-GITAKGIPNSISI 866
>LOX1_ORYSA (Q76I22) Lipoxygenase 1 (EC 1.13.11.12) (9-lipoxygenase) (r9-LOX1)| Length = 863 Score = 33.1 bits (74), Expect = 0.19 Identities = 17/25 (68%), Positives = 19/25 (76%) Frame = -1 Query: 291 PNTSDANGEKALGLTAMGIPNSVSI 217 PNTSD G A G+TA GIPNS+SI Sbjct: 840 PNTSDNKGA-AEGITARGIPNSISI 863
>ATF2_CHICK (O93602) Cyclic AMP-dependent transcription factor ATF-2| (Activating transcription factor 2) Length = 487 Score = 31.2 bits (69), Expect = 0.71 Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 10/90 (11%) Frame = +2 Query: 20 HCPHPINIIYDTIIIFHHPLIPGN*LPQPPRSQ*KV----------TQYTLRDTNRSMTS 169 H P + ++ ++ P IPG PQP +S+ K+ Q T DT + S Sbjct: 223 HVPAAVPLVRPVTMVPSIPGIPGPSSPQPVQSEAKLRLKAALTQQHPQVTNGDTAKGHPS 282 Query: 170 GRTTTERRKQRPCSAQMETLLGMPMAVSPS 259 G T+ + RP S Q SP+ Sbjct: 283 GLVRTQSEEPRPQSLQQPATSTTETPASPA 312
>GATA6_HUMAN (Q92908) Transcription factor GATA-6 (GATA-binding factor 6)| Length = 449 Score = 30.8 bits (68), Expect = 0.92 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 3/42 (7%) Frame = +1 Query: 22 LSSPYQHHLRHNHHFPSSTNPW---QLITATTQKPMKSNTIH 138 L+ Y HH H+HH PS +P+ L A P ++ +H Sbjct: 173 LNGTYHHHHHHHHHHPSPYSPYVGAPLTPAWPAGPFETPVLH 214
>ATF2_MOUSE (P16951) Cyclic AMP-dependent transcription factor ATF-2| (Activating transcription factor 2) (cAMP response element-binding protein CRE-BP1) (MXBP protein) Length = 487 Score = 30.4 bits (67), Expect = 1.2 Identities = 26/94 (27%), Positives = 39/94 (41%), Gaps = 10/94 (10%) Frame = +2 Query: 20 HCPHPINIIYDTIIIFHHPLIPGN*LPQPPRSQ*K------VTQ----YTLRDTNRSMTS 169 H P + ++ ++ P IPG PQP +S+ K +TQ T DT + S Sbjct: 223 HVPAAVPLVRPVTMVPSVPGIPGPSSPQPVQSEAKMRLKAALTQQHPPVTNGDTVKGHGS 282 Query: 170 GRTTTERRKQRPCSAQMETLLGMPMAVSPSAFSP 271 G T+ + RP S Q SP+ +P Sbjct: 283 GLVRTQSEESRPQSLQQPATSTTETPASPAHTTP 316
>ATF2_HUMAN (P15336) Cyclic AMP-dependent transcription factor ATF-2| (Activating transcription factor 2) (cAMP response element-binding protein CRE-BP1) (HB16) Length = 487 Score = 30.4 bits (67), Expect = 1.2 Identities = 26/94 (27%), Positives = 39/94 (41%), Gaps = 10/94 (10%) Frame = +2 Query: 20 HCPHPINIIYDTIIIFHHPLIPGN*LPQPPRSQ*K------VTQ----YTLRDTNRSMTS 169 H P + ++ ++ P IPG PQP +S+ K +TQ T DT + S Sbjct: 223 HVPAAVPLVRPVTMVPSVPGIPGPSSPQPVQSEAKMRLKAALTQQHPPVTNGDTVKGHGS 282 Query: 170 GRTTTERRKQRPCSAQMETLLGMPMAVSPSAFSP 271 G T+ + RP S Q SP+ +P Sbjct: 283 GLVRTQSEESRPQSLQQPATSTTETPASPAHTTP 316
>MA5D_SCHJA (P13411) Immunogenic miracidial antigen 5D (Fragment)| Length = 120 Score = 30.4 bits (67), Expect = 1.2 Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 2/86 (2%) Frame = +1 Query: 34 YQHHLRHNHHFPSSTNPWQLITATTQKP--MKSNTIHLARHEPIHDQRTDDYRKKETKTM 207 Y H H +F + + L T+T+ + S I +H + D+ DY + Sbjct: 1 YNHSHIHTQYFVTYVSFLLLFTSTSLNSPYLSSPVISTGQHIDVGDE---DYHDGDDDVD 57 Query: 208 LSSDGDAVGDAHGGEPQRLLPVGVRR 285 + D D V D H G P +LL G +R Sbjct: 58 YTDDVDDVDDPH-GSPSQLLQGGYQR 82
>DYHC_TRIGR (P23098) Dynein beta chain, ciliary| Length = 4466 Score = 30.0 bits (66), Expect = 1.6 Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 1/65 (1%) Frame = +1 Query: 82 PWQLITATTQKPMKSNT-IHLARHEPIHDQRTDDYRKKETKTMLSSDGDAVGDAHGGEPQ 258 P Q+ ATTQ + I AR E H+ DY KK+ + + + G +G G+ Q Sbjct: 1697 PAQVALATTQVWWTTEVNISFARLEEGHENSMKDYNKKQIQQLNTLIGLLIGKLTKGDRQ 1756 Query: 259 RLLPV 273 +++ + Sbjct: 1757 KIMTI 1761
>HXA1_MOUSE (P09022) Homeobox protein Hox-A1 (Hox-1.6) (Homeotic protein| ERA-1-993) (Early retinoic acid 1) (Homeoboxless protein ERA-1-399) Length = 331 Score = 29.3 bits (64), Expect = 2.7 Identities = 9/18 (50%), Positives = 13/18 (72%) Frame = +1 Query: 22 LSSPYQHHLRHNHHFPSS 75 +SSP+ HH H+HH P + Sbjct: 56 ISSPHHHHHHHHHHHPQT 73
>C18AA_PAEPP (Q45358) Parasporal crystal protein cry18Aa (Parasporal| delta-endotoxin CryXVIIIA(a)) (Crystaline parasporal protoxin) (79 kDa crystal protein) Length = 706 Score = 28.9 bits (63), Expect = 3.5 Identities = 13/31 (41%), Positives = 19/31 (61%) Frame = +1 Query: 115 PMKSNTIHLARHEPIHDQRTDDYRKKETKTM 207 P+ +NTI PI+ RTD +RKK T+ + Sbjct: 74 PIDNNTICSTDFTPINVMRTDPFRKKSTQEL 104
>DYHC_ANTCR (P39057) Dynein beta chain, ciliary| Length = 4466 Score = 28.9 bits (63), Expect = 3.5 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 1/65 (1%) Frame = +1 Query: 82 PWQLITATTQKPMKSNT-IHLARHEPIHDQRTDDYRKKETKTMLSSDGDAVGDAHGGEPQ 258 P Q+ ATTQ + I AR E H+ DY KK+ + + G +G G+ Q Sbjct: 1697 PAQVALATTQVWWTTEVNISFARLEEGHENSMKDYNKKQILQLNTLIGLLIGKLTKGDRQ 1756 Query: 259 RLLPV 273 +++ + Sbjct: 1757 KIMTI 1761
>ATF2_RAT (Q00969) Cyclic AMP-dependent transcription factor ATF-2| (Activating transcription factor 2) (cAMP response element-binding protein CRE-BP1) Length = 487 Score = 28.5 bits (62), Expect = 4.6 Identities = 25/94 (26%), Positives = 38/94 (40%), Gaps = 10/94 (10%) Frame = +2 Query: 20 HCPHPINIIYDTIIIFHHPLIPGN*LPQPPRSQ*K------VTQ----YTLRDTNRSMTS 169 H P + ++ ++ P IPG PQP +S+ K +TQ T DT + S Sbjct: 223 HVPAAVPLVRPVTMVPSVPGIPGPSSPQPVQSEAKMRLKAALTQQHPPVTNGDTVKGHGS 282 Query: 170 GRTTTERRKQRPCSAQMETLLGMPMAVSPSAFSP 271 G + + RP S Q SP+ +P Sbjct: 283 GLVRAQSEESRPQSLQQPATSTTETPASPAHTTP 316
>AHC1_YEAST (Q12433) Protein AHC1 (ADA HAT complex component 1)| Length = 566 Score = 28.1 bits (61), Expect = 6.0 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 8/44 (18%) Frame = +1 Query: 22 LSSPYQHHLRHNHHFPSS--------TNPWQLITATTQKPMKSN 129 + SP Q L+H HH P+S TN +Q+ T + + +++N Sbjct: 1 MMSPAQDKLQHQHHNPNSSSSSSSKMTNVYQVTTPKSPQDLENN 44
>DDLA_SHIFL (P0A6K0) D-alanine--D-alanine ligase A (EC 6.3.2.4)| (D-alanylalanine synthetase A) (D-Ala-D-Ala ligase A) Length = 364 Score = 28.1 bits (61), Expect = 6.0 Identities = 14/45 (31%), Positives = 24/45 (53%) Frame = +2 Query: 125 VTQYTLRDTNRSMTSGRTTTERRKQRPCSAQMETLLGMPMAVSPS 259 VT+ LRD ++ T T + A++E+ LG+P+ V P+ Sbjct: 143 VTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPA 187
>DDLA_ECOLI (P0A6J8) D-alanine--D-alanine ligase A (EC 6.3.2.4)| (D-alanylalanine synthetase A) (D-Ala-D-Ala ligase A) Length = 364 Score = 28.1 bits (61), Expect = 6.0 Identities = 14/45 (31%), Positives = 24/45 (53%) Frame = +2 Query: 125 VTQYTLRDTNRSMTSGRTTTERRKQRPCSAQMETLLGMPMAVSPS 259 VT+ LRD ++ T T + A++E+ LG+P+ V P+ Sbjct: 143 VTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPA 187
>DDLA_ECOL6 (Q8FKE3) D-alanine--D-alanine ligase A (EC 6.3.2.4)| (D-alanylalanine synthetase A) (D-Ala-D-Ala ligase A) Length = 364 Score = 28.1 bits (61), Expect = 6.0 Identities = 14/45 (31%), Positives = 24/45 (53%) Frame = +2 Query: 125 VTQYTLRDTNRSMTSGRTTTERRKQRPCSAQMETLLGMPMAVSPS 259 VT+ LRD ++ T T + A++E+ LG+P+ V P+ Sbjct: 143 VTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPA 187
>DDLA_ECO57 (P0A6J9) D-alanine--D-alanine ligase A (EC 6.3.2.4)| (D-alanylalanine synthetase A) (D-Ala-D-Ala ligase A) Length = 364 Score = 28.1 bits (61), Expect = 6.0 Identities = 14/45 (31%), Positives = 24/45 (53%) Frame = +2 Query: 125 VTQYTLRDTNRSMTSGRTTTERRKQRPCSAQMETLLGMPMAVSPS 259 VT+ LRD ++ T T + A++E+ LG+P+ V P+ Sbjct: 143 VTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPA 187
>YAI7_SCHPO (Q09894) Hypothetical protein C24B11.07c in chromosome I| Length = 561 Score = 28.1 bits (61), Expect = 6.0 Identities = 20/91 (21%), Positives = 38/91 (41%) Frame = +1 Query: 13 HASLSSPYQHHLRHNHHFPSSTNPWQLITATTQKPMKSNTIHLARHEPIHDQRTDDYRKK 192 H L P HH+ ++ H P+ +P + +P+ ++ RH P+H + K Sbjct: 320 HLPLVQP--HHM-NDMHGPTDNSPKKNKVLVNMRPINPSSFVSDRHSPLHPYSVPENGKP 376 Query: 193 ETKTMLSSDGDAVGDAHGGEPQRLLPVGVRR 285 + S+ + G A + +L + RR Sbjct: 377 NMGRIPSAPSLSKGRAMTADNMDMLSLTTRR 407
>HIPK4_RAT (Q4V793) Homeodomain-interacting protein kinase 4 (EC 2.7.11.1)| Length = 616 Score = 27.7 bits (60), Expect = 7.8 Identities = 12/29 (41%), Positives = 17/29 (58%) Frame = +1 Query: 7 LIHASLSSPYQHHLRHNHHFPSSTNPWQL 93 L+HA+ + HH + P +TNPWQL Sbjct: 238 LLHAARKA---HHFFKRNPHPDATNPWQL 263
>QIN_AVIS3 (P56260) Transforming protein Qin (Oncogene Qin)| Length = 387 Score = 27.7 bits (60), Expect = 7.8 Identities = 11/38 (28%), Positives = 17/38 (44%) Frame = +1 Query: 13 HASLSSPYQHHLRHNHHFPSSTNPWQLITATTQKPMKS 126 H + P+ HH H+HH P P + A + K+ Sbjct: 38 HHNSHHPHHHHHHHHHHPPPPQQPQRAAAAEEEDEEKA 75
>VGLM_EBV (P03215) Glycoprotein M| Length = 405 Score = 27.7 bits (60), Expect = 7.8 Identities = 17/50 (34%), Positives = 23/50 (46%) Frame = +2 Query: 95 LPQPPRSQ*KVTQYTLRDTNRSMTSGRTTTERRKQRPCSAQMETLLGMPM 244 L PR + T R+ RS TS ++ R+QRP S Q +PM Sbjct: 346 LESEPRPRPSRTPSPGRNRRRSSTSSSSSRSTRRQRPVSTQALVSSVLPM 395
>YO25_CAEEL (P34675) Hypothetical protein ZK688.5| Length = 1620 Score = 27.7 bits (60), Expect = 7.8 Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 2/73 (2%) Frame = +2 Query: 74 PLIPGN*LPQPPRSQ*KVTQYTLRDTNRSMTSGRTTTERRKQRPCS--AQMETLLGMPMA 247 P +P LP P Q + TS R TT R +P + A+ ETL P+A Sbjct: 628 PSVPVETLPPPGSDQ------------QPGTSRRFTTHRFNVQPDARGAETETLAPFPVA 675 Query: 248 VSPSAFSPLASDV 286 + P+ +A ++ Sbjct: 676 IEPNELQRIAKNI 688
>FOXGB_RAT (Q00939) Forkhead box protein G1B (Forkhead-related protein FKHL1)| (Transcription factor BF-1) (Brain factor 1) (BF1) Length = 480 Score = 27.7 bits (60), Expect = 7.8 Identities = 25/94 (26%), Positives = 35/94 (37%), Gaps = 6/94 (6%) Frame = +1 Query: 13 HASLSSPYQHHLRHNHHF--PSSTNPWQLITATTQKPMKSNTIHLARHEPI--HDQRTDD 180 H + P HH H+HH P + P Q+P + AR P D+ Sbjct: 39 HHNSHHPQHHHHHHHHHHPPPPAPQPPPPPPQQQQQPPPAPQPPQARGAPAADDDKGPQP 98 Query: 181 YRKKETKTMLSSDGDAVG--DAHGGEPQRLLPVG 276 + + + DA+G GG P L PVG Sbjct: 99 LLLPPSAALDGAKADALGAKGEPGGGPAELAPVG 132
>FOXGB_CHICK (Q90964) Forkhead box protein G1B (Forkhead-related protein FKHL1)| (Transcription factor BF-1) (Brain factor 1) (BF1) (CBF-1) (Proto-oncogene C-QIN) (N-62-5) (CEQ 3-1) Length = 451 Score = 27.7 bits (60), Expect = 7.8 Identities = 11/38 (28%), Positives = 17/38 (44%) Frame = +1 Query: 13 HASLSSPYQHHLRHNHHFPSSTNPWQLITATTQKPMKS 126 H + P+ HH H+HH P P + A + K+ Sbjct: 38 HHNSHHPHHHHHHHHHHPPPPQQPQRAAAAEEEDEEKA 75
>GDS1_YEAST (P41913) Protein GDS1| Length = 522 Score = 27.7 bits (60), Expect = 7.8 Identities = 16/53 (30%), Positives = 24/53 (45%) Frame = +2 Query: 122 KVTQYTLRDTNRSMTSGRTTTERRKQRPCSAQMETLLGMPMAVSPSAFSPLAS 280 K Y DTN SMT + T + + +Q ++L P S ++ S AS Sbjct: 325 KKRNYMDEDTNESMTEPKKTKTTKPGKQTKSQSLSVLSTPKKGSSASLSTFAS 377
>VNUA_PRVKA (P33485) Probable nuclear antigen| Length = 1733 Score = 24.6 bits (52), Expect(2) = 8.8 Identities = 10/36 (27%), Positives = 19/36 (52%) Frame = +1 Query: 1 RVLIHASLSSPYQHHLRHNHHFPSSTNPWQLITATT 108 R+ + ++ ++ HH +H+HH P + T TT Sbjct: 10 RLSLPSTTTTRDHHHQQHHHHPPPPPSRTHFTTITT 45 Score = 21.2 bits (43), Expect(2) = 8.8 Identities = 11/41 (26%), Positives = 16/41 (39%) Frame = +3 Query: 84 LATNYRNHPEANEK*HNTPCETRTDP*PADGRLPKEGNKDH 206 L ++ HP + H+ P R P D P +DH Sbjct: 65 LFLSFPPHPPRPPQDHHRPTPARDHRDPRDHLPPTRTRRDH 105 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.316 0.131 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 38,205,254 Number of Sequences: 219361 Number of extensions: 708727 Number of successful extensions: 2504 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 2288 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2466 length of database: 80,573,946 effective HSP length: 72 effective length of database: 64,779,954 effective search space used: 1554718896 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits)
