Clone Name | rbastl21c06 |
---|---|
Clone Library Name | barley_pub |
>LOX1_HORVU (P29114) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 107 bits (266), Expect = 1e-23 Identities = 50/50 (100%), Positives = 50/50 (100%) Frame = -3 Query: 295 KVVGMNHDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPNSISI 146 KVVGMNHDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPNSISI Sbjct: 813 KVVGMNHDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPNSISI 862
>LOX3_ORYSA (Q7G794) Putative lipoxygenase 3 (EC 1.13.11.12)| Length = 866 Score = 88.6 bits (218), Expect = 4e-18 Identities = 43/50 (86%), Positives = 45/50 (90%) Frame = -3 Query: 295 KVVGMNHDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPNSISI 146 KVVGMN D LKNRNGPA+FPYMLLYPNTSD GAAAG+TAKGIPNSISI Sbjct: 817 KVVGMNGDAGLKNRNGPAEFPYMLLYPNTSDVTGAAAGITAKGIPNSISI 866
>LOX1_ORYSA (Q76I22) Lipoxygenase 1 (EC 1.13.11.12) (9-lipoxygenase) (r9-LOX1)| Length = 863 Score = 80.5 bits (197), Expect = 1e-15 Identities = 37/50 (74%), Positives = 43/50 (86%) Frame = -3 Query: 295 KVVGMNHDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPNSISI 146 KV+ MN DP LKNR GPA FPY L++PNTSD+KGAA G+TA+GIPNSISI Sbjct: 814 KVLNMNKDPLLKNRVGPANFPYTLMFPNTSDNKGAAEGITARGIPNSISI 863
>LOX2_ORYSA (P29250) Lipoxygenase 2 (EC 1.13.11.12) (Lipoxygenase L-2)| Length = 870 Score = 77.4 bits (189), Expect = 9e-15 Identities = 37/50 (74%), Positives = 40/50 (80%) Frame = -3 Query: 295 KVVGMNHDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPNSISI 146 +VV MN DP KNR GP FPY LLYPNTSD KG AAGL+A+GIPNSISI Sbjct: 821 RVVAMNKDPHRKNRVGPTNFPYTLLYPNTSDLKGDAAGLSARGIPNSISI 870
>LOX4_ORYSA (Q53RB0) Probable lipoxygenase 4 (EC 1.13.11.12)| Length = 877 Score = 66.2 bits (160), Expect = 2e-11 Identities = 34/51 (66%), Positives = 37/51 (72%), Gaps = 1/51 (1%) Frame = -3 Query: 295 KVVGMNHDPELKNRNGPAKFPYMLLYPNTSD-HKGAAAGLTAKGIPNSISI 146 ++ MN + LKNRNGP K PYMLLYPNTSD K GLTA GIPNSISI Sbjct: 827 RIKDMNGNSALKNRNGPVKMPYMLLYPNTSDVTKEKGQGLTAMGIPNSISI 877
>LOXA_PHAVU (P27480) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 55.5 bits (132), Expect = 3e-08 Identities = 27/50 (54%), Positives = 32/50 (64%) Frame = -3 Query: 295 KVVGMNHDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPNSISI 146 K++G N D L+NRNGP K PY +L P D GLT +GIPNSISI Sbjct: 818 KIMGRNKDSSLRNRNGPVKMPYTVLLPTCEDE-----GLTFRGIPNSISI 862
>LOX4_SOYBN (P38417) Lipoxygenase-4 (EC 1.13.11.12) (L-4) (VSP94)| Length = 853 Score = 53.9 bits (128), Expect = 1e-07 Identities = 27/50 (54%), Positives = 34/50 (68%) Frame = -3 Query: 295 KVVGMNHDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPNSISI 146 K++ N D L+NR GPAK PY LLYP++ + GLT +GIPNSISI Sbjct: 810 KLIEKNKDETLRNRYGPAKMPYTLLYPSSEE------GLTFRGIPNSISI 853
>LOX1_LENCU (P38414) Lipoxygenase (EC 1.13.11.12)| Length = 866 Score = 53.1 bits (126), Expect = 2e-07 Identities = 26/50 (52%), Positives = 33/50 (66%) Frame = -3 Query: 295 KVVGMNHDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPNSISI 146 K+ N+D L+NR GP K PY LLYP++ + GLT +GIPNSISI Sbjct: 823 KLTQRNNDESLRNRYGPVKMPYTLLYPSSEE------GLTCRGIPNSISI 866
>LOX3_PEA (P09918) Seed lipoxygenase-3 (EC 1.13.11.12)| Length = 861 Score = 52.4 bits (124), Expect = 3e-07 Identities = 25/50 (50%), Positives = 35/50 (70%) Frame = -3 Query: 295 KVVGMNHDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPNSISI 146 K+ N+D +L+NR+GP + PY LLYP++ + GLT +GIPNSISI Sbjct: 818 KLTQRNNDEKLRNRHGPVEMPYTLLYPSSKE------GLTFRGIPNSISI 861
>LOXX_SOYBN (P24095) Seed lipoxygenase (EC 1.13.11.12)| Length = 864 Score = 52.0 bits (123), Expect = 4e-07 Identities = 26/50 (52%), Positives = 31/50 (62%) Frame = -3 Query: 295 KVVGMNHDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPNSISI 146 K+ N DP L+NR GP + PY LL H+ + GLT KGIPNSISI Sbjct: 821 KINARNSDPSLRNRTGPVQLPYTLL------HRSSEEGLTFKGIPNSISI 864
>LOX1_SOYBN (P08170) Seed lipoxygenase-1 (EC 1.13.11.12) (L-1)| Length = 839 Score = 50.1 bits (118), Expect = 1e-06 Identities = 27/51 (52%), Positives = 35/51 (68%), Gaps = 1/51 (1%) Frame = -3 Query: 295 KVVGMNHDPELK-NRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPNSISI 146 K+V N+DP L+ NR GP + PY LLYP++ + GLT +GIPNSISI Sbjct: 795 KLVRRNNDPSLQGNRLGPVQLPYTLLYPSSEE------GLTFRGIPNSISI 839
>LOX2_SOYBN (P09439) Seed lipoxygenase-2 (EC 1.13.11.12) (L-2)| Length = 865 Score = 49.3 bits (116), Expect = 2e-06 Identities = 25/50 (50%), Positives = 31/50 (62%) Frame = -3 Query: 295 KVVGMNHDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPNSISI 146 K+ N+D L NR GP + PY LL+PN+ GLT +GIPNSISI Sbjct: 823 KLARKNNDQSLSNRLGPVQLPYTLLHPNSE-------GLTCRGIPNSISI 865
>LOX2_PEA (P14856) Seed lipoxygenase-2 (EC 1.13.11.12)| Length = 864 Score = 48.9 bits (115), Expect = 3e-06 Identities = 24/50 (48%), Positives = 33/50 (66%) Frame = -3 Query: 295 KVVGMNHDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPNSISI 146 K+ N+DP L +R GP + PY LL+P++ + GLT +GIPNSISI Sbjct: 821 KLTNKNNDPSLYHRVGPVQLPYTLLHPSSKE------GLTFRGIPNSISI 864
>LOXB_LYCES (P38416) Lipoxygenase B (EC 1.13.11.12)| Length = 859 Score = 47.8 bits (112), Expect = 7e-06 Identities = 23/50 (46%), Positives = 31/50 (62%) Frame = -3 Query: 295 KVVGMNHDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPNSISI 146 +++ MN KNR+GP PY LL+P + + GLT KGIPNS+SI Sbjct: 816 RIMIMNSHKSWKNRSGPVNVPYTLLFPTSEE------GLTGKGIPNSVSI 859
>LOX3_SOYBN (P09186) Seed lipoxygenase-3 (EC 1.13.11.12) (L-3)| Length = 857 Score = 47.0 bits (110), Expect = 1e-05 Identities = 24/50 (48%), Positives = 33/50 (66%) Frame = -3 Query: 295 KVVGMNHDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPNSISI 146 K+ N+D +L+NR GP + PY LL P++ + GLT +GIPNSISI Sbjct: 814 KLSERNNDEKLRNRCGPVQMPYTLLLPSSKE------GLTFRGIPNSISI 857
>LOX1_SOLTU (P37831) Lipoxygenase 1 (EC 1.13.11.12)| Length = 861 Score = 46.2 bits (108), Expect = 2e-05 Identities = 23/50 (46%), Positives = 30/50 (60%) Frame = -3 Query: 295 KVVGMNHDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPNSISI 146 +++ N D L NR+GP PY LL+P + GLT KGIPNS+SI Sbjct: 818 QIIQRNGDNILTNRSGPVNAPYTLLFPTSE------GGLTGKGIPNSVSI 861
>LOX1_ARATH (Q06327) Lipoxygenase 1 (EC 1.13.11.12)| Length = 859 Score = 45.1 bits (105), Expect = 5e-05 Identities = 22/45 (48%), Positives = 28/45 (62%) Frame = -3 Query: 280 NHDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPNSISI 146 N D LKNR G K PY LL+P++ G+T +GIPNS+SI Sbjct: 821 NDDETLKNRTGLVKMPYTLLFPSSE------GGVTGRGIPNSVSI 859
>LOXB_PHAVU (P27481) Lipoxygenase (EC 1.13.11.12) (Fragment)| Length = 741 Score = 44.7 bits (104), Expect = 6e-05 Identities = 22/44 (50%), Positives = 29/44 (65%) Frame = -3 Query: 295 KVVGMNHDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGI 164 K+V N+D L+NR GPAK PY LLYP++ + GLT +GI Sbjct: 704 KLVQKNNDETLRNRTGPAKMPYTLLYPSSEE------GLTFRGI 741
>LOXA_LYCES (P38415) Lipoxygenase A (EC 1.13.11.12)| Length = 860 Score = 43.1 bits (100), Expect = 2e-04 Identities = 22/50 (44%), Positives = 29/50 (58%) Frame = -3 Query: 295 KVVGMNHDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPNSISI 146 +++ N + L NR GP PY LL+P + GLT KGIPNS+SI Sbjct: 817 QIMQRNGNNILTNRTGPVNAPYTLLFPTSE------GGLTGKGIPNSVSI 860
>LOX23_HORVU (Q8GSM2) Lipoxygenase 2.3, chloroplast precursor (EC 1.13.11.12)| (LOX2:Hv:3) Length = 896 Score = 38.9 bits (89), Expect = 0.003 Identities = 22/45 (48%), Positives = 27/45 (60%) Frame = -3 Query: 280 NHDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPNSISI 146 N++PE KNR G PY LL P + G+T +GIPNSISI Sbjct: 858 NNNPENKNRCGAGIVPYELLKPFSE------PGVTGRGIPNSISI 896
>LOXC2_ORYSA (Q84YK8) Probable lipoxygenase 8, chloroplast precursor (EC| 1.13.11.12) Length = 941 Score = 38.9 bits (89), Expect = 0.003 Identities = 22/47 (46%), Positives = 26/47 (55%) Frame = -3 Query: 286 GMNHDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPNSISI 146 G N D +LKNR G PY L+ P + AG+T GIPNS SI Sbjct: 901 GRNKDRKLKNRCGAGILPYQLMKPFSD------AGVTGMGIPNSTSI 941
>LOX21_HORVU (P93184) Lipoxygenase 2.1, chloroplast precursor (EC 1.13.11.12)| (LOX-100) (LOX2:Hv:1) Length = 936 Score = 38.1 bits (87), Expect = 0.006 Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 4/49 (8%) Frame = -3 Query: 280 NHDPELKNRNGPAKFPYMLLYPNTSDHKGA----AAGLTAKGIPNSISI 146 N+DP+ KNR+G PY+LL P+ D + GIPNSISI Sbjct: 888 NNDPDRKNRHGAGMVPYVLLRPSDGDPTDGDPTDEKMVMEMGIPNSISI 936
>LOXC1_ORYSA (P38419) Lipoxygenase 7, chloroplast precursor (EC 1.13.11.12)| Length = 924 Score = 37.7 bits (86), Expect = 0.007 Identities = 21/47 (44%), Positives = 26/47 (55%) Frame = -3 Query: 286 GMNHDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPNSISI 146 G N D +LKNR G PY L+ P + +G+T GIPNS SI Sbjct: 884 GRNKDRKLKNRCGAGILPYQLMKPFSD------SGVTGMGIPNSTSI 924
>LOX5_ORYSA (Q7XV13) Putative lipoxygenase 5 (EC 1.13.11.12)| Length = 899 Score = 37.0 bits (84), Expect = 0.013 Identities = 17/45 (37%), Positives = 26/45 (57%) Frame = -3 Query: 280 NHDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPNSISI 146 N DP +NR G PY L+ P+ + G+T +G+PNS++I Sbjct: 861 NADPSRRNRCGAGVLPYELMAPS------SGPGITCRGVPNSVTI 899
>LOX6_ORYSA (Q8H016) Probable lipoxygenase 6 (EC 1.13.11.12)| Length = 918 Score = 35.4 bits (80), Expect = 0.037 Identities = 20/45 (44%), Positives = 25/45 (55%) Frame = -3 Query: 280 NHDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPNSISI 146 N D KNR G PY LL P++ G+T +G+PNSISI Sbjct: 880 NADHGRKNRCGAGVLPYELLAPSSPP------GVTCRGVPNSISI 918
>LOX22_HORVU (Q8GSM3) Lipoxygenase 2.2, chloroplast precursor (EC 1.13.11.12)| (LOX2:Hv:2) Length = 932 Score = 33.1 bits (74), Expect = 0.18 Identities = 19/45 (42%), Positives = 24/45 (53%) Frame = -3 Query: 280 NHDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPNSISI 146 N D +NR+G PY+LL P + A + GIPNSISI Sbjct: 889 NKDDSRRNRHGAGVVPYVLLRPLNGNPMDAKT-VMEMGIPNSISI 932
>LOXC_ARATH (P38418) Lipoxygenase, chloroplast precursor (EC 1.13.11.12)| Length = 896 Score = 31.2 bits (69), Expect = 0.70 Identities = 20/40 (50%), Positives = 23/40 (57%) Frame = -3 Query: 265 LKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPNSISI 146 LKNR G Y LL P TS+H G+T G+P SISI Sbjct: 863 LKNRAGAGVVKYELLKP-TSEH-----GVTGMGVPYSISI 896
>CAD16_MOUSE (O88338) Cadherin-16 precursor (Kidney-specific cadherin)| (Ksp-cadherin) Length = 830 Score = 28.5 bits (62), Expect = 4.5 Identities = 11/19 (57%), Positives = 14/19 (73%) Frame = -3 Query: 292 VVGMNHDPELKNRNGPAKF 236 V G++ DP+L NRNGP F Sbjct: 688 VSGVSEDPDLANRNGPYSF 706
>Y2172_STRP8 (P60362) UPF0297 protein spyM18_2172| Length = 89 Score = 28.1 bits (61), Expect = 5.9 Identities = 13/42 (30%), Positives = 23/42 (54%) Frame = +3 Query: 84 RQVSYVANALYSSMVADGLN*MEMLLGMPLAVSPAAAPLWSE 209 RQ+S A+Y S+ G N + ++G L+ PA P +++ Sbjct: 18 RQISETLTAVYHSLDEKGYNPINQIVGYVLSGDPAYVPRYND 59
>Y2114_STRP1 (P68886) UPF0297 protein SPy2114/M5005_Spy1797| Length = 89 Score = 28.1 bits (61), Expect = 5.9 Identities = 13/42 (30%), Positives = 23/42 (54%) Frame = +3 Query: 84 RQVSYVANALYSSMVADGLN*MEMLLGMPLAVSPAAAPLWSE 209 RQ+S A+Y S+ G N + ++G L+ PA P +++ Sbjct: 18 RQISETLTAVYHSLDEKGYNPINQIVGYVLSGDPAYVPRYND 59
>Y1798_STRP3 (P60361) UPF0297 protein SpyM3_1798/SPs1796| Length = 89 Score = 28.1 bits (61), Expect = 5.9 Identities = 13/42 (30%), Positives = 23/42 (54%) Frame = +3 Query: 84 RQVSYVANALYSSMVADGLN*MEMLLGMPLAVSPAAAPLWSE 209 RQ+S A+Y S+ G N + ++G L+ PA P +++ Sbjct: 18 RQISETLTAVYHSLDEKGYNPINQIVGYVLSGDPAYVPRYND 59
>Y1796_STRP6 (Q5X9I2) UPF0297 protein M6_Spy1796| Length = 89 Score = 28.1 bits (61), Expect = 5.9 Identities = 13/42 (30%), Positives = 23/42 (54%) Frame = +3 Query: 84 RQVSYVANALYSSMVADGLN*MEMLLGMPLAVSPAAAPLWSE 209 RQ+S A+Y S+ G N + ++G L+ PA P +++ Sbjct: 18 RQISETLTAVYHSLDEKGYNPINQIVGYVLSGDPAYVPRYND 59
>Y1781_STRPM (Q48QW9) UPF0297 protein M28_Spy1781| Length = 89 Score = 28.1 bits (61), Expect = 5.9 Identities = 13/42 (30%), Positives = 23/42 (54%) Frame = +3 Query: 84 RQVSYVANALYSSMVADGLN*MEMLLGMPLAVSPAAAPLWSE 209 RQ+S A+Y S+ G N + ++G L+ PA P +++ Sbjct: 18 RQISETLTAVYHSLDEKGYNPINQIVGYVLSGDPAYVPRYND 59
>WDR33_HUMAN (Q9C0J8) WD-repeat protein 33 (WD-repeat protein WDC146)| Length = 1336 Score = 28.1 bits (61), Expect = 5.9 Identities = 16/40 (40%), Positives = 23/40 (57%) Frame = -2 Query: 272 PGAQEPQRPG*VSLHAALPQHLRPQGRRCRAYRQGHPQQH 153 PGA E +RPG P+ R +GRR ++R+G P +H Sbjct: 1074 PGAWEGRRPGDERFPRD-PEDPRFRGRREESFRRGAPPRH 1112 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 39,700,252 Number of Sequences: 219361 Number of extensions: 695065 Number of successful extensions: 1585 Number of sequences better than 10.0: 34 Number of HSP's better than 10.0 without gapping: 1547 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1566 length of database: 80,573,946 effective HSP length: 74 effective length of database: 64,341,232 effective search space used: 1544189568 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)