ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl21c05 |
|---|---|
| Clone Library Name | barley_pub |
>Y2162_ARATH (O22224) Protein At2g41620| Length = 861 Score = 37.0 bits (84), Expect = 0.012 Identities = 15/23 (65%), Positives = 19/23 (82%) Frame = -1 Query: 327 IANLVASNMSRNWPQDLYQKVAQ 259 IA +ASN RNWP+DLY+KVA+ Sbjct: 837 IAGFLASNTHRNWPRDLYEKVAR 859
>CD209_HYLCO (Q8HY01) CD209 antigen (Dendritic cell-specific ICAM-3-grabbing| nonintegrin 1) (DC-SIGN1) Length = 404 Score = 29.6 bits (65), Expect = 2.0 Identities = 21/53 (39%), Positives = 28/53 (52%) Frame = +2 Query: 89 GLQTRQTWFHRQTTMSTHHGALNLQLPVQMVLGNGELPIQIAHFPSTSGQTQT 247 GL RQT ++ HGAL LQL +L L IQ++ FPS+ Q Q+ Sbjct: 22 GLGFRQTRGYKSLAGCLGHGALVLQLLSFTLLAG--LLIQVSKFPSSISQEQS 72
>CD209_HYLLA (Q8HY03) CD209 antigen (Dendritic cell-specific ICAM-3-grabbing| nonintegrin 1) (DC-SIGN1) Length = 450 Score = 29.6 bits (65), Expect = 2.0 Identities = 21/53 (39%), Positives = 28/53 (52%) Frame = +2 Query: 89 GLQTRQTWFHRQTTMSTHHGALNLQLPVQMVLGNGELPIQIAHFPSTSGQTQT 247 GL RQT ++ HGAL LQL +L L IQ++ FPS+ Q Q+ Sbjct: 22 GLGFRQTRGYKSLAGCLGHGALVLQLLSFTLLAG--LLIQVSKFPSSISQEQS 72
>ZIM10_MOUSE (Q6P1E1) Retinoic acid-induced protein 17 (PIAS-like protein Zimp10)| Length = 1072 Score = 29.3 bits (64), Expect = 2.6 Identities = 20/62 (32%), Positives = 25/62 (40%), Gaps = 2/62 (3%) Frame = +1 Query: 91 PTNKTDMVPQT--NNHVHAPWSFKPSTTCSNGVGEWGASDTDSPFP*HFRPNTNYSYALS 264 P+ PQ NH H+ +F PS+ G GASD P TN LS Sbjct: 991 PSQPPRQPPQAAPGNHPHSDLTFNPSSALEGQAGAQGASDMPEPSLDLLPELTNPDELLS 1050 Query: 265 HL 270 +L Sbjct: 1051 YL 1052
>CXI_CONMI (P69498) I-superfamily conotoxin precursor| Length = 67 Score = 29.3 bits (64), Expect = 2.6 Identities = 12/34 (35%), Positives = 17/34 (50%) Frame = -1 Query: 144 WCVDMVVCLWNHVCLVCRPILCVSKFNKTATFHD 43 +C + C W C CR + C +F K ATF + Sbjct: 35 YCTPYLPCCWGICCDTCRNV-CHLRFGKRATFQE 67
>CXI2_CONVX (P69501) I-superfamily conotoxin-2 precursor| Length = 67 Score = 29.3 bits (64), Expect = 2.6 Identities = 12/34 (35%), Positives = 17/34 (50%) Frame = -1 Query: 144 WCVDMVVCLWNHVCLVCRPILCVSKFNKTATFHD 43 +C + C W C CR + C +F K ATF + Sbjct: 35 YCTPYLPCCWGICCDTCRNV-CHLRFGKRATFQE 67
>YAAU_ECOLI (P31679) Hypothetical metabolite transport protein yaaU| Length = 443 Score = 28.9 bits (63), Expect = 3.4 Identities = 14/30 (46%), Positives = 17/30 (56%) Frame = -2 Query: 173 EQVVEGLKLHGAWTWLFVCGTMSVLFVGLS 84 EQ+ LKL W L GT++ LFVG S Sbjct: 42 EQLTPALKLDADWIGLLGAGTLAGLFVGTS 71
>NCKP1_ARATH (Q5S2C4) Protein NAP1 (Nck-associated protein 1) (AtNAP1) (AtNAP125)| (p125Nap1) (NAP of plants) (ARP2/3 regulatory protein subunit NAPP) (Protein GNARLED) Length = 1425 Score = 27.7 bits (60), Expect = 7.5 Identities = 16/45 (35%), Positives = 24/45 (53%) Frame = +1 Query: 133 VHAPWSFKPSTTCSNGVGEWGASDTDSPFP*HFRPNTNYSYALSH 267 +HA S K STT G G G+S T +P +F+ +++ Y H Sbjct: 1315 IHASPSMKNSTTPQRGSGS-GSSSTAAPDSGYFKGSSSSLYGQEH 1358
>ZIM10_HUMAN (Q9ULJ6) Retinoic acid-induced protein 17 (PIAS-like protein Zimp10)| Length = 1067 Score = 27.7 bits (60), Expect = 7.5 Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 2/62 (3%) Frame = +1 Query: 91 PTNKTDMVPQT--NNHVHAPWSFKPSTTCSNGVGEWGASDTDSPFP*HFRPNTNYSYALS 264 P+ PQ ++H H+ +F PS+ G GASD P TN LS Sbjct: 986 PSQPPRQPPQAAPSSHPHSDLTFNPSSALEGQAGAQGASDMPEPSLDLLPELTNPDELLS 1045 Query: 265 HL 270 +L Sbjct: 1046 YL 1047
>AROB_SULAC (Q4JC76) 3-dehydroquinate synthase (EC 4.2.3.4)| Length = 353 Score = 27.7 bits (60), Expect = 7.5 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%) Frame = -3 Query: 304 HEQELASGF-VPEGGSVHMSSLCLA*SAREMGY 209 H E SGF +P G ++ + +C A A EMGY Sbjct: 242 HAIEAGSGFSIPHGYAISVGMVCEAKIAEEMGY 274
>NHRF2_RAT (Q920G2) Na(+)/H(+) exchange regulatory cofactor NHE-RF2 (NHERF-2)| (Tyrosine kinase activator protein 1) (TKA-1) (SRY-interacting protein 1) (SIP-1) (Solute carrier family 9 isoform A3 regulatory factor 2) (NHE3 kinase A regulatory protein E3KA Length = 337 Score = 27.3 bits (59), Expect = 9.8 Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 1/35 (2%) Frame = +1 Query: 136 HAPWSFKPSTTCSNGVG-EWGASDTDSPFP*HFRP 237 H PW KP CS +G + G D + P P RP Sbjct: 116 HNPWEPKPDWACSGSLGSDTGHKDVNGP-PRELRP 149
>HEMN_BRAJA (O31381) Oxygen-independent coproporphyrinogen III oxidase (EC| 1.3.99.22) (Coproporphyrinogenase) (Coprogen oxidase) Length = 450 Score = 27.3 bits (59), Expect = 9.8 Identities = 11/38 (28%), Positives = 23/38 (60%) Frame = -3 Query: 319 PCGKQHEQELASGFVPEGGSVHMSSLCLA*SAREMGYL 206 P K+H++ + G +P+G + H + +A + +E GY+ Sbjct: 242 PDFKKHQRMINQGALPDGPARHDQACAIANALKEAGYV 279
>PDZK1_MOUSE (Q9JIL4) PDZ domain-containing protein 1 (CFTR-associated protein| of 70 kDa) (Na/Pi cotransporter C-terminal-associated protein) (NaPi-Cap1) (Na(+)/H(+) exchanger regulatory factor 3) (Sodium-hydrogen exchanger regulatory factor 3) Length = 519 Score = 27.3 bits (59), Expect = 9.8 Identities = 15/38 (39%), Positives = 21/38 (55%) Frame = -2 Query: 218 NGLSVSEAPHSPTPFEQVVEGLKLHGAWTWLFVCGTMS 105 NG +V E P +++VVE +K G L VCG M+ Sbjct: 427 NGENVQEEP-----YDRVVERIKSSGKHVTLLVCGKMA 459 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 53,825,669 Number of Sequences: 219361 Number of extensions: 1153360 Number of successful extensions: 2419 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 2390 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2419 length of database: 80,573,946 effective HSP length: 84 effective length of database: 62,147,622 effective search space used: 1491542928 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
