ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl21c05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 103 3e-19
2dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 103 3e-19
3gb|AC134231.2| Oryza sativa (japonica cultivar-group) chromosome... 103 3e-19
4dbj|AK099999.1| Oryza sativa (japonica cultivar-group) cDNA clon... 103 3e-19
5gb|AY108425.1| Zea mays PCO146490 mRNA sequence 103 3e-19
6emb|Z95331.2|HS941F9 Human DNA sequence from clone CTA-941F9 on ... 44 0.28
7dbj|AB051572.1| Aphis gossypii mRNA for GrpE, complete cds 44 0.28
8emb|AL646090.5| Human DNA sequence from clone RP11-542F9 on chro... 42 1.1
9emb|AL593844.4| Human DNA sequence from clone RP11-406O16 on chr... 42 1.1
10emb|AL731688.14| Mouse DNA sequence from clone RP23-291K6 on chr... 42 1.1
11emb|AL732401.6| Mouse DNA sequence from clone RP23-405K20 on chr... 42 1.1
12gb|AC019306.10| Homo sapiens chromosome 18, clone RP11-326M20, c... 42 1.1
13gb|AC025159.28| Homo sapiens 12 BAC RP11-1082K22 (Roswell Park C... 42 1.1
14gb|AC007768.5| Homo sapiens chromosome 18, clone RP11-540M4, com... 42 1.1
15gb|AC024942.18|AC024942 Homo sapiens 12 BAC RP11-1115M13 (Roswel... 42 1.1
16gb|AC003114.1|T12M4 Arabidopsis thaliana chromosome 1 BAC T12M4 ... 42 1.1
17ref|NM_001035934.1| Arabidopsis thaliana protein transporter AT1... 40 4.3
18ref|NM_179292.1| Arabidopsis thaliana protein transporter AT1G09... 40 4.3
19ref|NM_100797.4| Arabidopsis thaliana protein transporter AT1G09... 40 4.3
20gb|AY341245.1| Homo sapiens chromosome condensation 1-like (CHC1... 40 4.3
21emb|AL157813.11| Human DNA sequence from clone RP11-165D7 on chr... 40 4.3
22emb|AL137843.4| Human DNA sequence from clone RP3-377O6 on chrom... 40 4.3
23emb|CR925744.7| Zebrafish DNA sequence from clone RP71-37A9 in l... 40 4.3
24gb|AY050888.1| Arabidopsis thaliana At1g09270 mRNA sequence 40 4.3
25emb|Y14616.1|ATIMPA4 Arabidopsis thaliana partial mRNA for impor... 40 4.3
26gb|AY117313.1| Arabidopsis thaliana putative importin alpha prot... 40 4.3
27gb|AY090944.1| Arabidopsis thaliana putative importin alpha prot... 40 4.3
28emb|BX005379.9| Zebrafish DNA sequence from clone DKEY-184P9 in ... 40 4.3
29gb|AC009260.13| Homo sapiens 12 BAC RP11-435A10 (Roswell Park Ca... 40 4.3
30gb|AC018992.6| Homo sapiens chromosome 8, clone RP11-468O2, comp... 40 4.3
31emb|BX276081.12| Zebrafish DNA sequence from clone CH211-270G19 ... 40 4.3
32emb|BX465211.8| Zebrafish DNA sequence from clone CH211-142D23 i... 40 4.3
33gb|AF367284.1|AF367284 Arabidopsis thaliana At1g09270/T12M4_2 mR... 40 4.3
34gb|AC013602.4|AC013602 Homo sapiens, clone RP11-10C6, complete s... 40 4.3
35emb|BX815301.1|CNS0AALB Arabidopsis thaliana Full-length cDNA Co... 40 4.3
36gb|AC079283.4|AC079283 Arabidopsis thaliana chromosome 1 BAC F7O... 40 4.3
37gb|AC069550.4|AC069550 Sequence of chromosome 2 clone RP11-471B2... 40 4.3
38gb|AC068228.8| Homo sapiens chromosome 8, clone RP11-539E17, com... 40 4.3
39gb|AC103681.4| Homo sapiens chromosome 11, clone CTD-2560E9, com... 40 4.3
40gb|AC105029.7| Homo sapiens chromosome 8, clone CTD-2210A23, com... 40 4.3
41gb|AF254136.3| Homo sapiens chromosome 8 clone RP11-386F22, RP11... 40 4.3
42gb|AC104430.3| Homo sapiens chromosome 8 clone RP11-391E1 map 8q... 40 4.3
43emb|AL928977.10| Zebrafish DNA sequence from clone DKEY-24D19 in... 40 4.3
44gb|AC154126.2| Mus musculus BAC clone RP23-471O11 from chromosom... 40 4.3 
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  103 bits (52), Expect = 3e-19
 Identities = 67/72 (93%)
 Strand = Plus / Plus

                                                                            
Query: 250      tcatatgcactgagccaccttctggtacaaatcctgaggccaattcctgctcatgttgct 309
                |||||||||||| ||||||||||| ||||||||||| ||||| |||||||||||||||||
Sbjct: 13075155 tcatatgcactgcgccaccttctgatacaaatcctgtggccagttcctgctcatgttgct 13075214

                            
Query: 310      tgccacaaggtt 321
                |||||| |||||
Sbjct: 13075215 tgccacgaggtt 13075226
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  103 bits (52), Expect = 3e-19
 Identities = 67/72 (93%)
 Strand = Plus / Plus

                                                                            
Query: 250      tcatatgcactgagccaccttctggtacaaatcctgaggccaattcctgctcatgttgct 309
                |||||||||||| ||||||||||| ||||||||||| ||||| |||||||||||||||||
Sbjct: 13071930 tcatatgcactgcgccaccttctgatacaaatcctgtggccagttcctgctcatgttgct 13071989

                            
Query: 310      tgccacaaggtt 321
                |||||| |||||
Sbjct: 13071990 tgccacgaggtt 13072001
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>gb|AC134231.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0006D11,
              complete sequence
          Length = 176637

 Score =  103 bits (52), Expect = 3e-19
 Identities = 67/72 (93%)
 Strand = Plus / Plus

                                                                          
Query: 250    tcatatgcactgagccaccttctggtacaaatcctgaggccaattcctgctcatgttgct 309
              |||||||||||| ||||||||||| ||||||||||| ||||| |||||||||||||||||
Sbjct: 152853 tcatatgcactgcgccaccttctgatacaaatcctgtggccagttcctgctcatgttgct 152912

                          
Query: 310    tgccacaaggtt 321
              |||||| |||||
Sbjct: 152913 tgccacgaggtt 152924
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>dbj|AK099999.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013134K18, full
            insert sequence
          Length = 3073

 Score =  103 bits (52), Expect = 3e-19
 Identities = 67/72 (93%)
 Strand = Plus / Minus

                                                                        
Query: 250  tcatatgcactgagccaccttctggtacaaatcctgaggccaattcctgctcatgttgct 309
            |||||||||||| ||||||||||| ||||||||||| ||||| |||||||||||||||||
Sbjct: 2691 tcatatgcactgcgccaccttctgatacaaatcctgtggccagttcctgctcatgttgct 2632

                        
Query: 310  tgccacaaggtt 321
            |||||| |||||
Sbjct: 2631 tgccacgaggtt 2620
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>gb|AY108425.1| Zea mays PCO146490 mRNA sequence
          Length = 775

 Score =  103 bits (52), Expect = 3e-19
 Identities = 67/72 (93%)
 Strand = Plus / Minus

                                                                       
Query: 250 tcatatgcactgagccaccttctggtacaaatcctgaggccaattcctgctcatgttgct 309
           |||||||||||| ||||||||||| ||||||||||| |||||||||| ||||||||||||
Sbjct: 608 tcatatgcactgtgccaccttctgatacaaatcctgtggccaattccggctcatgttgct 549

                       
Query: 310 tgccacaaggtt 321
           ||| ||||||||
Sbjct: 548 tgctacaaggtt 537
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>emb|Z95331.2|HS941F9 Human DNA sequence from clone CTA-941F9 on chromosome 22q13, complete
              sequence
          Length = 127587

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 157    ccttcaactacctgttcaaatg 178
              ||||||||||||||||||||||
Sbjct: 116078 ccttcaactacctgttcaaatg 116057
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>dbj|AB051572.1| Aphis gossypii mRNA for GrpE, complete cds
          Length = 881

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 156 accttcaactacctgttcaaat 177
           ||||||||||||||||||||||
Sbjct: 666 accttcaactacctgttcaaat 645
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>emb|AL646090.5| Human DNA sequence from clone RP11-542F9 on chromosome 6 Contains a
             novel gene, complete sequence
          Length = 88711

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 97    aacaagacagacatggttcca 117
             |||||||||||||||||||||
Sbjct: 87086 aacaagacagacatggttcca 87106
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>emb|AL593844.4| Human DNA sequence from clone RP11-406O16 on chromosome 6 Contains
           the 3' part of a novel gene, complete sequence
          Length = 157929

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 97  aacaagacagacatggttcca 117
           |||||||||||||||||||||
Sbjct: 375 aacaagacagacatggttcca 395
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>emb|AL731688.14| Mouse DNA sequence from clone RP23-291K6 on chromosome 11 Contains
           the 3' end of the Slit3 gene for slit homolog 3
           (Drosophila), complete sequence
          Length = 113164

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 208 gatagcccatttccctagcac 228
           |||||||||||||||||||||
Sbjct: 16  gatagcccatttccctagcac 36
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>emb|AL732401.6| Mouse DNA sequence from clone RP23-405K20 on chromosome 11 Contains
             part of the Slit3 gene for slit homolog 3 (Drosophila),
             complete sequence
          Length = 89624

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 208   gatagcccatttccctagcac 228
             |||||||||||||||||||||
Sbjct: 87640 gatagcccatttccctagcac 87660
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>gb|AC019306.10| Homo sapiens chromosome 18, clone RP11-326M20, complete sequence
          Length = 175840

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 96    aaacaagacagacatggttcc 116
             |||||||||||||||||||||
Sbjct: 10044 aaacaagacagacatggttcc 10064
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>gb|AC025159.28| Homo sapiens 12 BAC RP11-1082K22 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 209961

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 208    gatagcccatttccctagcac 228
              |||||||||||||||||||||
Sbjct: 113002 gatagcccatttccctagcac 112982
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>gb|AC007768.5| Homo sapiens chromosome 18, clone RP11-540M4, complete sequence
          Length = 175579

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 96    aaacaagacagacatggttcc 116
             |||||||||||||||||||||
Sbjct: 97179 aaacaagacagacatggttcc 97199
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>gb|AC024942.18|AC024942 Homo sapiens 12 BAC RP11-1115M13 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 146120

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 208   gatagcccatttccctagcac 228
             |||||||||||||||||||||
Sbjct: 94042 gatagcccatttccctagcac 94022
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>gb|AC003114.1|T12M4 Arabidopsis thaliana chromosome 1 BAC T12M4 sequence, complete
            sequence
          Length = 59261

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 165  tacctgttcaaatggtgttgg 185
            |||||||||||||||||||||
Sbjct: 6168 tacctgttcaaatggtgttgg 6188
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>ref|NM_001035934.1| Arabidopsis thaliana protein transporter AT1G09270 transcript
           variant AT1G09270.3 mRNA, complete cds
          Length = 2475

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 166 acctgttcaaatggtgttgg 185
           ||||||||||||||||||||
Sbjct: 828 acctgttcaaatggtgttgg 809
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>ref|NM_179292.1| Arabidopsis thaliana protein transporter AT1G09270 transcript
           variant AT1G09270.2 mRNA, complete cds
          Length = 2404

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 166 acctgttcaaatggtgttgg 185
           ||||||||||||||||||||
Sbjct: 838 acctgttcaaatggtgttgg 819
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>ref|NM_100797.4| Arabidopsis thaliana protein transporter AT1G09270 transcript
           variant AT1G09270.1 mRNA, complete cds
          Length = 2710

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 166 acctgttcaaatggtgttgg 185
           ||||||||||||||||||||
Sbjct: 838 acctgttcaaatggtgttgg 819
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>gb|AY341245.1| Homo sapiens chromosome condensation 1-like (CHC1L) gene, complete
            cds
          Length = 37676

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 57   cagttttattgaattttgac 76
            ||||||||||||||||||||
Sbjct: 4242 cagttttattgaattttgac 4223
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>emb|AL157813.11| Human DNA sequence from clone RP11-165D7 on chromosome 13 Contains the
             CHC1L gene for chromosome condensation 1-like, 3 novel
             genes and a CpG island, complete sequence
          Length = 114519

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 57    cagttttattgaattttgac 76
             ||||||||||||||||||||
Sbjct: 32876 cagttttattgaattttgac 32895
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>emb|AL137843.4| Human DNA sequence from clone RP3-377O6 on chromosome Xq22.2-23 Contains
              a thyroid autoantigen 70kDa (Ku antigen) (G22P1)
              pseudogene, complete sequence
          Length = 133402

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 180    tgttggggaatggggagctt 199
              ||||||||||||||||||||
Sbjct: 108770 tgttggggaatggggagctt 108789
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>emb|CR925744.7| Zebrafish DNA sequence from clone RP71-37A9 in linkage group 11, complete
              sequence
          Length = 169494

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 56     gcagttttattgaattttgacaca 79
              |||||| |||||||||||||||||
Sbjct: 107420 gcagttgtattgaattttgacaca 107443
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>gb|AY050888.1| Arabidopsis thaliana At1g09270 mRNA sequence
          Length = 2406

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 166 acctgttcaaatggtgttgg 185
           ||||||||||||||||||||
Sbjct: 877 acctgttcaaatggtgttgg 858
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>emb|Y14616.1|ATIMPA4 Arabidopsis thaliana partial mRNA for importin alpha-like protein 4
          Length = 1778

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 166 acctgttcaaatggtgttgg 185
           ||||||||||||||||||||
Sbjct: 713 acctgttcaaatggtgttgg 694
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>gb|AY117313.1| Arabidopsis thaliana putative importin alpha protein (At1g09270)
           mRNA, complete cds
          Length = 1648

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 166 acctgttcaaatggtgttgg 185
           ||||||||||||||||||||
Sbjct: 740 acctgttcaaatggtgttgg 721
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>gb|AY090944.1| Arabidopsis thaliana putative importin alpha protein (At1g09270)
           mRNA, complete cds
          Length = 2001

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 166 acctgttcaaatggtgttgg 185
           ||||||||||||||||||||
Sbjct: 838 acctgttcaaatggtgttgg 819
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>emb|BX005379.9| Zebrafish DNA sequence from clone DKEY-184P9 in linkage group 21,
              complete sequence
          Length = 185814

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 40     taaatcatgaaaagtggcagtttt 63
              |||||||| |||||||||||||||
Sbjct: 154062 taaatcataaaaagtggcagtttt 154085
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>gb|AC009260.13| Homo sapiens 12 BAC RP11-435A10 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 99727

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 21    acagccttggatttagtaataaat 44
             |||||||||||||| |||||||||
Sbjct: 11641 acagccttggattttgtaataaat 11618
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>gb|AC018992.6| Homo sapiens chromosome 8, clone RP11-468O2, complete sequence
          Length = 151712

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 97     aacaagacagacatggttcc 116
              ||||||||||||||||||||
Sbjct: 138418 aacaagacagacatggttcc 138399
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>emb|BX276081.12| Zebrafish DNA sequence from clone CH211-270G19 in linkage group 10,
             complete sequence
          Length = 130240

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 47    tgaaaagtggcagttttatt 66
             ||||||||||||||||||||
Sbjct: 96761 tgaaaagtggcagttttatt 96742
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>emb|BX465211.8| Zebrafish DNA sequence from clone CH211-142D23 in linkage group 17,
              complete sequence
          Length = 173690

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 33     ttagtaataaatcatgaaaa 52
              ||||||||||||||||||||
Sbjct: 121635 ttagtaataaatcatgaaaa 121616
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>gb|AF367284.1|AF367284 Arabidopsis thaliana At1g09270/T12M4_2 mRNA, partial cds
          Length = 1126

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 166 acctgttcaaatggtgttgg 185
           ||||||||||||||||||||
Sbjct: 828 acctgttcaaatggtgttgg 809
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>gb|AC013602.4|AC013602 Homo sapiens, clone RP11-10C6, complete sequence
          Length = 152770

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 97     aacaagacagacatggttcc 116
              ||||||||||||||||||||
Sbjct: 111271 aacaagacagacatggttcc 111252
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>emb|BX815301.1|CNS0AALB Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS50ZB07 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1954

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 166 acctgttcaaatggtgttgg 185
           ||||||||||||||||||||
Sbjct: 798 acctgttcaaatggtgttgg 779
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>gb|AC079283.4|AC079283 Arabidopsis thaliana chromosome 1 BAC F7O12 genomic sequence, complete
             sequence
          Length = 39456

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 28    tggatttagtaataaatcatgaaa 51
             ||||||||||||| ||||||||||
Sbjct: 9978  tggatttagtaatgaatcatgaaa 10001
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>gb|AC069550.4|AC069550 Sequence of chromosome 2 clone RP11-471B2 containing Homo sapiens NRXNI
              gene, partial cds, complete sequence
          Length = 166054

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 97     aacaagacagacatggttcc 116
              ||||||||||||||||||||
Sbjct: 140103 aacaagacagacatggttcc 140122
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>gb|AC068228.8| Homo sapiens chromosome 8, clone RP11-539E17, complete sequence
          Length = 200622

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 97    aacaagacagacatggttcc 116
             ||||||||||||||||||||
Sbjct: 96245 aacaagacagacatggttcc 96264
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>gb|AC103681.4| Homo sapiens chromosome 11, clone CTD-2560E9, complete sequence
          Length = 215485

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 97    aacaagacagacatggttcc 116
             ||||||||||||||||||||
Sbjct: 98729 aacaagacagacatggttcc 98710
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>gb|AC105029.7| Homo sapiens chromosome 8, clone CTD-2210A23, complete sequence
          Length = 123934

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 298   gctcatgttgcttgccacaa 317
             ||||||||||||||||||||
Sbjct: 27805 gctcatgttgcttgccacaa 27786
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>gb|AF254136.3| Homo sapiens chromosome 8 clone RP11-386F22, RP11-820H12 map q24.2,
              complete sequence
          Length = 184865

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 97     aacaagacagacatggttcc 116
              ||||||||||||||||||||
Sbjct: 159177 aacaagacagacatggttcc 159196
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>gb|AC104430.3| Homo sapiens chromosome 8 clone RP11-391E1 map 8q24.2, complete
             sequence
          Length = 170376

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 97    aacaagacagacatggttcc 116
             ||||||||||||||||||||
Sbjct: 34385 aacaagacagacatggttcc 34404
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>emb|AL928977.10| Zebrafish DNA sequence from clone DKEY-24D19 in linkage group 20,
              complete sequence
          Length = 165014

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 56     gcagttttattgaattttgacaca 79
              ||||||||||||||||||| ||||
Sbjct: 101179 gcagttttattgaattttgccaca 101202
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>gb|AC154126.2| Mus musculus BAC clone RP23-471O11 from chromosome 7, complete sequence
          Length = 198860

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 217    tttccctagcacttcaggcc 236
              ||||||||||||||||||||
Sbjct: 107023 tttccctagcacttcaggcc 107004


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,247,840
Number of Sequences: 3902068
Number of extensions: 3247840
Number of successful extensions: 68721
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 68640
Number of HSP's gapped (non-prelim): 81
length of query: 327
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 305
effective length of database: 17,147,199,772
effective search space: 5229895930460
effective search space used: 5229895930460
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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