ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl21c03 |
|---|---|
| Clone Library Name | barley_pub |
>RBM19_HUMAN (Q9Y4C8) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 960 Score = 38.9 bits (89), Expect = 0.003 Identities = 19/31 (61%), Positives = 22/31 (70%) Frame = -2 Query: 383 STHLYGRHLVIERAKEGETLEELRARTAAQF 291 STHLYGR LV+E A TL+ LR +TAA F Sbjct: 897 STHLYGRRLVLEWADSEVTLQALRRKTAAHF 927
>RBM19_MOUSE (Q8R3C6) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 952 Score = 35.8 bits (81), Expect = 0.026 Identities = 17/31 (54%), Positives = 21/31 (67%) Frame = -2 Query: 383 STHLYGRHLVIERAKEGETLEELRARTAAQF 291 STHLYGR LV+E A T++ LR +TA F Sbjct: 889 STHLYGRRLVLEWADSEVTVQTLRRKTARHF 919
>CATA_MYCTU (Q08129) Peroxidase/catalase T (EC 1.11.1.6) (Catalase-peroxidase| T) Length = 740 Score = 31.6 bits (70), Expect = 0.48 Identities = 15/41 (36%), Positives = 18/41 (43%), Gaps = 9/41 (21%) Frame = -3 Query: 313 EQEPPLSLWTNRVVSSGCP---------RGGNRQVWWTKAL 218 EQ PP++ T S+GCP GG Q WW L Sbjct: 3 EQHPPITETTTGAASNGCPVVGHMKYPVEGGGNQDWWPNRL 43
>CATA_MYCBO (P46817) Peroxidase/catalase (EC 1.11.1.6) (Catalase-peroxidase)| Length = 740 Score = 31.6 bits (70), Expect = 0.48 Identities = 15/41 (36%), Positives = 18/41 (43%), Gaps = 9/41 (21%) Frame = -3 Query: 313 EQEPPLSLWTNRVVSSGCP---------RGGNRQVWWTKAL 218 EQ PP++ T S+GCP GG Q WW L Sbjct: 3 EQHPPITETTTGAASNGCPVVGHMKYPVEGGGNQDWWPNRL 43
>Y9637_RHILO (Q98P28) UPF0229 protein mll9637| Length = 436 Score = 31.6 bits (70), Expect = 0.48 Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 11/67 (16%) Frame = -2 Query: 371 YGRHLVIERAKEGET------LEELRARTAAQFVDEQ-----SGFQRMSTRRKQTSLVDE 225 +GR + + R K+ E + EL A+ A+ V E+ R+ RRK+ + VD Sbjct: 170 HGRRIALRRPKQAELDAIARQIAELEAKPASALVRERIAALREALDRLERRRKRIAYVDP 229 Query: 224 GSVKFSR 204 ++F+R Sbjct: 230 VDIRFNR 236
>TGAS_STRMB (P81453) Protein-glutamine gamma-glutamyltransferase precursor (EC| 2.3.2.13) (Transglutaminase) (TGase) (MTG) Length = 407 Score = 30.0 bits (66), Expect = 1.4 Identities = 13/28 (46%), Positives = 16/28 (57%) Frame = -2 Query: 347 RAKEGETLEELRARTAAQFVDEQSGFQR 264 R + GET E R A + DE+ GFQR Sbjct: 174 RPRSGETRAEFEGRVAKESFDEEKGFQR 201
>MRD1_CRYNE (Q5KJL5) Multiple RNA-binding domain-containing protein 1| Length = 769 Score = 30.0 bits (66), Expect = 1.4 Identities = 12/20 (60%), Positives = 16/20 (80%) Frame = -2 Query: 380 THLYGRHLVIERAKEGETLE 321 THL GRHLV++ A EGE ++ Sbjct: 709 THLLGRHLVLQWANEGEEVD 728
>TRME_TREPA (O83561) Probable tRNA modification GTPase trmE| Length = 495 Score = 29.3 bits (64), Expect = 2.4 Identities = 14/36 (38%), Positives = 19/36 (52%) Frame = -3 Query: 340 KRERRLKNCEQEPPLSLWTNRVVSSGCPRGGNRQVW 233 +R RRL+ C QE L R+V GCP G ++ Sbjct: 205 ERLRRLRACWQERALQRTGVRIVLGGCPNAGKSSLF 240
>SCOB_XANCP (O34263) Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B| (EC 2.8.3.5) (Succinyl CoA:3-oxoacid CoA-transferase) (OXCT B) Length = 213 Score = 29.3 bits (64), Expect = 2.4 Identities = 15/29 (51%), Positives = 18/29 (62%) Frame = -2 Query: 359 LVIERAKEGETLEELRARTAAQFVDEQSG 273 LV+ A EG LEELRA+T FV + G Sbjct: 185 LVLVEAAEGVGLEELRAKTGVAFVVQTRG 213
>RGA6_SCHPO (O43027) Probable Rho-GTPase-activating protein 6| Length = 733 Score = 28.5 bits (62), Expect = 4.1 Identities = 15/34 (44%), Positives = 17/34 (50%) Frame = +1 Query: 154 KNLLPCILPPEHYHSTILENLTEPSSTRLVCFLL 255 K PC P + HST+LE PSS V F L Sbjct: 132 KYFTPCGSPTKLIHSTLLEERDTPSSLEHVSFYL 165
>DAM1_CANGA (Q6FLB2) DASH complex subunit DAM1 (Outer kinetochore protein DAM1)| Length = 307 Score = 28.5 bits (62), Expect = 4.1 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 9/61 (14%) Frame = -2 Query: 359 LVIERAKEGETLEELRARTAAQFVDEQ----SG-----FQRMSTRRKQTSLVDEGSVKFS 207 L E++K L LR + AQ DE+ SG FQ+ + RR + +L DE KF+ Sbjct: 125 LSAEKSKLKSRLNSLREKPNAQTSDEKMKKPSGISQPIFQKPNVRRPRNALNDENLHKFN 184 Query: 206 R 204 R Sbjct: 185 R 185
>CRTI_NARPS (Q40406) Phytoene dehydrogenase, chloroplast precursor (EC| 1.14.99.-) (Phytoene desaturase) Length = 570 Score = 28.1 bits (61), Expect = 5.3 Identities = 13/35 (37%), Positives = 23/35 (65%) Frame = -3 Query: 277 VVSSGCPRGGNRQVWWTKALLSFQG**NDNVLGVK 173 +VS CP GG ++ +++K L +FQG + LG++ Sbjct: 6 LVSVVCPSGGIKKRYFSKGLDNFQGFRSSECLGIQ 40
>ZN132_HUMAN (P52740) Zinc finger protein 132| Length = 589 Score = 28.1 bits (61), Expect = 5.3 Identities = 9/22 (40%), Positives = 15/22 (68%) Frame = -1 Query: 291 CGRTEWFPADVHEEETDKSGGR 226 CGR W A++H+ + + SGG+ Sbjct: 30 CGRDFWLNANLHQHQKEHSGGK 51
>NADM_PYRKO (Q5JEF8) Nicotinamide-nucleotide adenylyltransferase (EC 2.7.7.1)| (NAD(+) pyrophosphorylase) (NAD(+) diphosphorylase) (NMN adenylyltransferase) Length = 188 Score = 27.3 bits (59), Expect = 9.1 Identities = 13/29 (44%), Positives = 18/29 (62%) Frame = -2 Query: 347 RAKEGETLEELRARTAAQFVDEQSGFQRM 261 R EGE EEL R+ A+F+ E G +R+ Sbjct: 137 RMVEGEPWEELVPRSVAEFIREIKGVERI 165 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 55,614,408 Number of Sequences: 219361 Number of extensions: 1063247 Number of successful extensions: 2517 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 2469 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2516 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 1386249648 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
