Clone Information

BLAST Search Result

Clone Name	rbastl21c03
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|XM_473857.1\| Oryza sativa (japonica cultivar-group), predic...	178	9e-42
2	dbj\|AK064469.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	178	9e-42
3	emb\|AL731610.4\|OSJN00255 Oryza sativa genomic DNA, chromosome 4,...	151	2e-33
4	emb\|AL606684.3\|OSJN00088 Oryza sativa genomic DNA, chromosome 4,...	151	2e-33
5	dbj\|AP008210.1\| Oryza sativa (japonica cultivar-group) genomic D...	151	2e-33
6	emb\|AL590065.3\| Human DNA sequence from clone RP11-307A17 on chr...	44	0.33
7	ref\|XM_574917.1\| PREDICTED: Rattus norvegicus similar to LRRGT00...	44	0.33
8	emb\|CT485605.3\| RP43-010N04, complete sequence	44	0.33
9	gb\|AC136786.4\| Oryza sativa (japonica cultivar-group) chromosome...	42	1.3
10	emb\|BX927391.6\| Zebrafish DNA sequence from clone CH211-213B8 in...	42	1.3
11	gb\|AC163387.2\| Mus musculus chromosome 1, clone RP24-181G14, com...	42	1.3
12	gb\|AC117432.4\| Homo sapiens 3 BAC RP11-80F7 (Roswell Park Cancer...	42	1.3
13	dbj\|AP008217.1\| Oryza sativa (japonica cultivar-group) genomic D...	42	1.3
14	emb\|AL935166.14\| Zebrafish DNA sequence from clone CH211-199C19 ...	42	1.3
15	gb\|AC106719.4\| Homo sapiens 3p BAC RP11-12J13 (Roswell Park Canc...	42	1.3
16	gb\|DP000010.1\| Oryza sativa (japonica cultivar-group) chromosome...	42	1.3
17	ref\|NM_127224.3\| Arabidopsis thaliana MYB7; DNA binding / transc...	40	5.2
18	gb\|CP000127.1\| Nitrosococcus oceani ATCC 19707, complete genome	40	5.2
19	gb\|AC112789.4\| Mus musculus BAC clone RP23-151J21 from chromosom...	40	5.2
20	gb\|AC164640.4\| Mus musculus BAC clone RP23-228M12 from chromosom...	40	5.2
21	gb\|AY519573.1\| Arabidopsis thaliana MYB transcription factor (At...	40	5.2
22	emb\|BX005133.4\| Human DNA sequence from clone DASS-103C7 on chro...	40	5.2
23	emb\|AL732432.3\| Human DNA sequence from clone XXbac-92J3 on chro...	40	5.2
24	emb\|AL662781.4\| Human DNA sequence from clone XXbac-1H2 on chrom...	40	5.2
25	emb\|AL596106.4\| Human DNA sequence from clone RP11-13B15 on chro...	40	5.2
26	emb\|AL442064.10\| Human DNA sequence from clone RP11-272D1 on chr...	40	5.2
27	emb\|AL356294.28\| Human DNA sequence from clone RP11-49F20 on chr...	40	5.2
28	emb\|AL157881.14\| Human DNA sequence from clone RP11-104M22 on ch...	40	5.2
29	gb\|AC087237.14\| Homo sapiens 12p BAC RP11-405A12 (Roswell Park C...	40	5.2
30	emb\|X90385.1\|ATY49GENE A.thaliana DNA for Y49 gene	40	5.2
31	gb\|AC091606.8\| Mus Musculus Strain C57BL6/J chromosome X BAC, RP...	40	5.2
32	emb\|CR759808.2\| Human DNA sequence from clone DAMC-143C14 on chr...	40	5.2
33	gb\|AC005825.4\| Arabidopsis thaliana chromosome 2 clone T24I21 ma...	40	5.2
34	gb\|AY072387.1\| Arabidopsis thaliana putative MYB family transcri...	40	5.2
35	gb\|AC053544.5\| Homo sapiens BAC clone RP11-793B9 from 4, complet...	40	5.2
36	gb\|AY070850.1\| Drosophila melanogaster GM03205 full length cDNA	40	5.2
37	gb\|AF102214.1\|AF102214 HIV-1 strain SE4349 from Sweden, 5' long ...	40	5.2
38	emb\|BX821980.1\|CNS0AA2S Arabidopsis thaliana Full-length cDNA Co...	40	5.2
39	emb\|BX927232.4\| Human DNA sequence from clone DAMA-334F21 on chr...	40	5.2
40	emb\|AL732294.18\| Mouse DNA sequence from clone RP23-59N7 on chro...	40	5.2
41	gb\|AF129395.1\|AF129395 HIV-1 isolate 005pf-96(1) from United Kin...	40	5.2
42	gb\|U34604.1\|HIV1U34604 Human immunodeficiency virus HIV-1, clone...	40	5.2
43	gb\|U34603.1\|HIV1U34603 Human immunodeficiency virus HIV-1, clone...	40	5.2
44	emb\|AL096770.17\|HSBA150A6 Human DNA sequence from clone RP11-150...	40	5.2
45	gb\|U72096.1\|HIVU72096 HIV-1 clone pMCE31.3 from Canada, 5' long ...	40	5.2
46	gb\|U72095.1\|HIVU72095 HIV-1 clone pMCE31.1 from Canada, 5' long ...	40	5.2
47	gb\|AY856764.1\| HIV-1 isolate 4035 from France nef protein (nef) ...	40	5.2
48	gb\|U26937.1\|ATU26937 Arabidopsis thaliana clone myb7 DNA-binding...	40	5.2
49	gb\|U26137.1\|HIV1U26137 Human immunodeficiency virus type 1 patie...	40	5.2
50	emb\|AL359402.3\|CNS05TEX Human chromosome 14 DNA sequence BAC C-2...	40	5.2
51	emb\|AL133223.5\|CNS01DU8 Human chromosome 14 DNA sequence BAC R-1...	40	5.2

>ref|XM_473857.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2715

 Score =  178 bits (90), Expect = 9e-42
 Identities = 165/190 (86%)
 Strand = Plus / Minus

                                                                        
Query: 194  attctactatccttgaaaacttaacagagccttcgtccaccagacttgtctgtttcctcc 253
            |||||||||||||||||||||||||||||||||||||||| || || || || || ||| 
Sbjct: 2713 attctactatccttgaaaacttaacagagccttcgtccacaaggctggtttgctttctct 2654

                                                                        
Query: 254  tcgtggacatccgctggaaaccactctgttcgtccacaaactgagcggcggttcttgctc 313
            || |||| | || |||||||||||||||||| || ||||||||||| ||||| || ||||
Sbjct: 2653 tcttggatagcctctggaaaccactctgttcatcaacaaactgagcagcggtcctcgctc 2594

                                                                        
Query: 314  gcagttcttcaagcgtctctccctcttttgctcgctcaatcaccaggtgtcggccgtaga 373
            | ||||||||||| |||||||| || || |||||||| |||||||  ||||| |||||||
Sbjct: 2593 gtagttcttcaagagtctctccttccttagctcgctcgatcaccaaatgtcgcccgtaga 2534

                      
Query: 374  gatgagtgct 383
            ||||||||||
Sbjct: 2533 gatgagtgct 2524

to top

>dbj|AK064469.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-110-H01, full
            insert sequence
          Length = 1813

 Score =  178 bits (90), Expect = 9e-42
 Identities = 165/190 (86%)
 Strand = Plus / Minus

                                                                        
Query: 194  attctactatccttgaaaacttaacagagccttcgtccaccagacttgtctgtttcctcc 253
            |||||||||||||||||||||||||||||||||||||||| || || || || || ||| 
Sbjct: 1610 attctactatccttgaaaacttaacagagccttcgtccacaaggctggtttgctttctct 1551

                                                                        
Query: 254  tcgtggacatccgctggaaaccactctgttcgtccacaaactgagcggcggttcttgctc 313
            || |||| | || |||||||||||||||||| || ||||||||||| ||||| || ||||
Sbjct: 1550 tcttggatagcctctggaaaccactctgttcatcaacaaactgagcagcggtcctcgctc 1491

                                                                        
Query: 314  gcagttcttcaagcgtctctccctcttttgctcgctcaatcaccaggtgtcggccgtaga 373
            | ||||||||||| |||||||| || || |||||||| |||||||  ||||| |||||||
Sbjct: 1490 gtagttcttcaagagtctctccttccttagctcgctcgatcaccaaatgtcgcccgtaga 1431

                      
Query: 374  gatgagtgct 383
            ||||||||||
Sbjct: 1430 gatgagtgct 1421

to top

>emb|AL731610.4|OSJN00255 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0070C17,
             complete sequence
          Length = 160484

 Score =  151 bits (76), Expect = 2e-33
 Identities = 142/164 (86%)
 Strand = Plus / Plus

                                                                         
Query: 194   attctactatccttgaaaacttaacagagccttcgtccaccagacttgtctgtttcctcc 253
             |||||||||||||||||||||||||||||||||||||||| || || || || || ||| 
Sbjct: 23711 attctactatccttgaaaacttaacagagccttcgtccacaaggctggtttgctttctct 23770

                                                                         
Query: 254   tcgtggacatccgctggaaaccactctgttcgtccacaaactgagcggcggttcttgctc 313
             || |||| | || |||||||||||||||||| || ||||||||||| ||||| || ||||
Sbjct: 23771 tcttggatagcctctggaaaccactctgttcatcaacaaactgagcagcggtcctcgctc 23830

                                                         
Query: 314   gcagttcttcaagcgtctctccctcttttgctcgctcaatcacc 357
             | ||||||||||| |||||||| || || |||||||| ||||||
Sbjct: 23831 gtagttcttcaagagtctctccttccttagctcgctcgatcacc 23874

to top

>emb|AL606684.3|OSJN00088 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0085I10,
              complete sequence
          Length = 150551

 Score =  151 bits (76), Expect = 2e-33
 Identities = 142/164 (86%)
 Strand = Plus / Plus

                                                                          
Query: 194    attctactatccttgaaaacttaacagagccttcgtccaccagacttgtctgtttcctcc 253
              |||||||||||||||||||||||||||||||||||||||| || || || || || ||| 
Sbjct: 139004 attctactatccttgaaaacttaacagagccttcgtccacaaggctggtttgctttctct 139063

                                                                          
Query: 254    tcgtggacatccgctggaaaccactctgttcgtccacaaactgagcggcggttcttgctc 313
              || |||| | || |||||||||||||||||| || ||||||||||| ||||| || ||||
Sbjct: 139064 tcttggatagcctctggaaaccactctgttcatcaacaaactgagcagcggtcctcgctc 139123

                                                          
Query: 314    gcagttcttcaagcgtctctccctcttttgctcgctcaatcacc 357
              | ||||||||||| |||||||| || || |||||||| ||||||
Sbjct: 139124 gtagttcttcaagagtctctccttccttagctcgctcgatcacc 139167

to top

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  151 bits (76), Expect = 2e-33
 Identities = 142/164 (86%)
 Strand = Plus / Plus

                                                                            
Query: 194      attctactatccttgaaaacttaacagagccttcgtccaccagacttgtctgtttcctcc 253
                |||||||||||||||||||||||||||||||||||||||| || || || || || ||| 
Sbjct: 31041631 attctactatccttgaaaacttaacagagccttcgtccacaaggctggtttgctttctct 31041690

                                                                            
Query: 254      tcgtggacatccgctggaaaccactctgttcgtccacaaactgagcggcggttcttgctc 313
                || |||| | || |||||||||||||||||| || ||||||||||| ||||| || ||||
Sbjct: 31041691 tcttggatagcctctggaaaccactctgttcatcaacaaactgagcagcggtcctcgctc 31041750

                                                            
Query: 314      gcagttcttcaagcgtctctccctcttttgctcgctcaatcacc 357
                | ||||||||||| |||||||| || || |||||||| ||||||
Sbjct: 31041751 gtagttcttcaagagtctctccttccttagctcgctcgatcacc 31041794

to top

>emb|AL590065.3| Human DNA sequence from clone RP11-307A17 on chromosome X Contains a
              novel gene (MGC34831) and the 5' end of a novel gene(
              FLJ36601), complete sequence
          Length = 187386

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 85     aaatacaagagaagatagaaga 106
              ||||||||||||||||||||||
Sbjct: 166159 aaatacaagagaagatagaaga 166138

to top

>ref|XM_574917.1| PREDICTED: Rattus norvegicus similar to LRRGT00194 (LOC499591), mRNA
          Length = 5148

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 86   aatacaagagaagatagaagag 107
            ||||||||||||||||||||||
Sbjct: 1629 aatacaagagaagatagaagag 1650

to top

>emb|CT485605.3| RP43-010N04, complete sequence
          Length = 162117

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 85     aaatacaagagaagatagaaga 106
              ||||||||||||||||||||||
Sbjct: 144525 aaatacaagagaagatagaaga 144504

to top

>gb|AC136786.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0027P09,
              complete sequence
          Length = 171861

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 83     aaaaatacaagagaagatagaagag 107
              ||||||| |||||||||||||||||
Sbjct: 123952 aaaaataaaagagaagatagaagag 123928

to top

>emb|BX927391.6| Zebrafish DNA sequence from clone CH211-213B8 in linkage group 1,
              complete sequence
          Length = 146449

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 158    atttgttgccttgtattttac 178
              |||||||||||||||||||||
Sbjct: 138860 atttgttgccttgtattttac 138840

to top

>gb|AC163387.2| Mus musculus chromosome 1, clone RP24-181G14, complete sequence
          Length = 194188

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 22     atcactgtatttcattttcca 42
              |||||||||||||||||||||
Sbjct: 123495 atcactgtatttcattttcca 123475

to top

>gb|AC117432.4| Homo sapiens 3 BAC RP11-80F7 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 152631

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 196   tctactatccttgaaaactta 216
             |||||||||||||||||||||
Sbjct: 11235 tctactatccttgaaaactta 11255

to top

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 83       aaaaatacaagagaagatagaagag 107
                ||||||| |||||||||||||||||
Sbjct: 15714271 aaaaataaaagagaagatagaagag 15714247

to top

>emb|AL935166.14| Zebrafish DNA sequence from clone CH211-199C19 in linkage group 1,
             complete sequence
          Length = 121976

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 158   atttgttgccttgtattttac 178
             |||||||||||||||||||||
Sbjct: 87022 atttgttgccttgtattttac 87042

to top

>gb|AC106719.4| Homo sapiens 3p BAC RP11-12J13 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 154652

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 196   tctactatccttgaaaactta 216
             |||||||||||||||||||||
Sbjct: 43838 tctactatccttgaaaactta 43818

to top

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 83       aaaaatacaagagaagatagaagag 107
                ||||||| |||||||||||||||||
Sbjct: 15801648 aaaaataaaagagaagatagaagag 15801624

to top

>ref|NM_127224.3| Arabidopsis thaliana MYB7; DNA binding / transcription factor
           AT2G16720 (MYB7) mRNA, complete cds
          Length = 901

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 233 ccagacttgtctgtttcctc 252
           ||||||||||||||||||||
Sbjct: 493 ccagacttgtctgtttcctc 474

to top

>gb|CP000127.1| Nitrosococcus oceani ATCC 19707, complete genome
          Length = 3481691

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 257     tggacatccgctggaaacca 276
               ||||||||||||||||||||
Sbjct: 3081863 tggacatccgctggaaacca 3081882

to top

>gb|AC112789.4| Mus musculus BAC clone RP23-151J21 from chromosome 7, complete sequence
          Length = 200592

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 50     gttgctgcagtttcttttct 69
              ||||||||||||||||||||
Sbjct: 176518 gttgctgcagtttcttttct 176537

to top

>gb|AC164640.4| Mus musculus BAC clone RP23-228M12 from chromosome 7, complete sequence
          Length = 232468

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 50     gttgctgcagtttcttttct 69
              ||||||||||||||||||||
Sbjct: 166618 gttgctgcagtttcttttct 166599

to top

>gb|AY519573.1| Arabidopsis thaliana MYB transcription factor (At2g16720) mRNA,
           complete cds
          Length = 810

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 233 ccagacttgtctgtttcctc 252
           ||||||||||||||||||||
Sbjct: 482 ccagacttgtctgtttcctc 463

to top

>emb|BX005133.4| Human DNA sequence from clone DASS-103C7 on chromosome 6, complete
             sequence
          Length = 96209

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 43    cacacgagttgctgcagtttcttt 66
             ||||||||||| ||||||||||||
Sbjct: 39748 cacacgagttgatgcagtttcttt 39771

to top

>emb|AL732432.3| Human DNA sequence from clone XXbac-92J3 on chromosome 6 contains the
            OR5V1 and OR12D3 genes for olfactory receptor, family 5,
            subfamily V, member 1 and family 12, subfamily D, member
            3, complete sequence
          Length = 52664

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 43   cacacgagttgctgcagtttcttt 66
            ||||||||||| ||||||||||||
Sbjct: 9970 cacacgagttgatgcagtttcttt 9993

to top

>emb|AL662781.4| Human DNA sequence from clone XXbac-1H2 on chromosome 6 contains the
             OR5U1, OR5V1 and OR12D3 genes for olfactory receptor,
             family 5, subfamily U, member1, subfamily V, member 1 and
             family 12, subfamily D, member 3, the OR2B4P pseudogene
             for olfactory receptor, family 2, subfamily B, member 4
             and a DEAD/H box polypeptide 6 (DDX6) pseudogene, complete
             sequence
          Length = 106642

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 43    cacacgagttgctgcagtttcttt 66
             ||||||||||| ||||||||||||
Sbjct: 67143 cacacgagttgatgcagtttcttt 67166

to top

>emb|AL596106.4| Human DNA sequence from clone RP11-13B15 on chromosome 13, complete
             sequence
          Length = 116621

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 69    tccagcactaacccaaaaat 88
             ||||||||||||||||||||
Sbjct: 62500 tccagcactaacccaaaaat 62481

to top

>emb|AL442064.10| Human DNA sequence from clone RP11-272D1 on chromosome 9 Contains the
             3' end of the EDG2 gene for endothelial differentiation,
             lysophosphatidic acid G-protein-coupled receptor, 2,
             complete sequence
          Length = 169905

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 84    aaaatacaagagaagatagaagag 107
             ||||| ||||||||||||||||||
Sbjct: 12474 aaaatgcaagagaagatagaagag 12497

to top

>emb|AL356294.28| Human DNA sequence from clone RP11-49F20 on chromosome 13 Contains a
             glycogenin (GYG) pseudogene, complete sequence
          Length = 135345

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 235   agacttgtctgtttcctcct 254
             ||||||||||||||||||||
Sbjct: 33186 agacttgtctgtttcctcct 33205

to top

>emb|AL157881.14| Human DNA sequence from clone RP11-104M22 on chromosome 9q31.1-32
             Contains the 3' end of the MUSK gene for muscle, skeletal,
             receptor tyrosine kinase and the 3' end of the EDG2 gene
             for endothelial differentiation, lysophosphatidic acid
             G-protein-coupled receptor, 2, complete sequence
          Length = 162726

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 84    aaaatacaagagaagatagaagag 107
             ||||| ||||||||||||||||||
Sbjct: 95850 aaaatgcaagagaagatagaagag 95873

to top

>gb|AC087237.14| Homo sapiens 12p BAC RP11-405A12 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 166380

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 43    cacacgagttgctgcagtttcttt 66
             ||||||||||| ||||||||||||
Sbjct: 27473 cacacgagttgatgcagtttcttt 27496

to top

>emb|X90385.1|ATY49GENE A.thaliana DNA for Y49 gene
          Length = 2471

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 233  ccagacttgtctgtttcctc 252
            ||||||||||||||||||||
Sbjct: 1245 ccagacttgtctgtttcctc 1226

to top

>gb|AC091606.8| Mus Musculus Strain C57BL6/J chromosome X BAC, RP23-75P20, complete
             sequence
          Length = 234105

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 56    gcagtttcttttctccagca 75
             ||||||||||||||||||||
Sbjct: 59853 gcagtttcttttctccagca 59834

to top

>emb|CR759808.2| Human DNA sequence from clone DAMC-143C14 on chromosome 6, complete
             sequence
          Length = 104964

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 43    cacacgagttgctgcagtttcttt 66
             ||||||||||| ||||||||||||
Sbjct: 53022 cacacgagttgatgcagtttcttt 53045

to top

>gb|AC005825.4| Arabidopsis thaliana chromosome 2 clone T24I21 map mi398, complete
             sequence
          Length = 112792

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 233   ccagacttgtctgtttcctc 252
             ||||||||||||||||||||
Sbjct: 60384 ccagacttgtctgtttcctc 60403

to top

>gb|AY072387.1| Arabidopsis thaliana putative MYB family transcription factor
           (At2g16720) mRNA, complete cds
          Length = 573

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 233 ccagacttgtctgtttcctc 252
           ||||||||||||||||||||
Sbjct: 198 ccagacttgtctgtttcctc 179

to top

>gb|AC053544.5| Homo sapiens BAC clone RP11-793B9 from 4, complete sequence
          Length = 187332

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 43     cacacgagttgctgcagtttcttt 66
              ||||||||||| ||||||||||||
Sbjct: 121717 cacacgagttgatgcagtttcttt 121740

to top

>gb|AY070850.1| Drosophila melanogaster GM03205 full length cDNA
          Length = 3228

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 328  gtctctccctcttttgctcg 347
            ||||||||||||||||||||
Sbjct: 2942 gtctctccctcttttgctcg 2923

to top

>gb|AF102214.1|AF102214 HIV-1 strain SE4349 from Sweden, 5' long terminal repeat, partial
           sequence
          Length = 416

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 90  caagagaagatagaagaggc 109
           ||||||||||||||||||||
Sbjct: 22  caagagaagatagaagaggc 41

to top

>emb|BX821980.1|CNS0AA2S Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL89ZH12 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 956

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 233 ccagacttgtctgtttcctc 252
           ||||||||||||||||||||
Sbjct: 485 ccagacttgtctgtttcctc 466

to top

>emb|BX927232.4| Human DNA sequence from clone DAMA-334F21 on chromosome 6, complete
             sequence
          Length = 99722

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 43    cacacgagttgctgcagtttcttt 66
             ||||||||||| ||||||||||||
Sbjct: 50861 cacacgagttgatgcagtttcttt 50884

to top

>emb|AL732294.18| Mouse DNA sequence from clone RP23-59N7 on chromosome X, complete
             sequence
          Length = 112893

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 56    gcagtttcttttctccagca 75
             ||||||||||||||||||||
Sbjct: 65756 gcagtttcttttctccagca 65737

to top

>gb|AF129395.1|AF129395 HIV-1 isolate 005pf-96(1) from United Kingdom, nef protein (nef)
           gene, complete cds
          Length = 612

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 90  caagagaagatagaagaggc 109
           ||||||||||||||||||||
Sbjct: 439 caagagaagatagaagaggc 458

to top

>gb|U34604.1|HIV1U34604 Human immunodeficiency virus HIV-1, clone ACH320.2A.2.1, complete
            genome
          Length = 9631

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 90   caagagaagatagaagaggc 109
            ||||||||||||||||||||
Sbjct: 9253 caagagaagatagaagaggc 9272



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 90  caagagaagatagaagaggc 109
           ||||||||||||||||||||
Sbjct: 159 caagagaagatagaagaggc 178

to top

>gb|U34603.1|HIV1U34603 Human immunodeficiency virus HIV-1, clone ACH320.2A.1.2, complete
            genome
          Length = 9636

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 90   caagagaagatagaagaggc 109
            ||||||||||||||||||||
Sbjct: 9258 caagagaagatagaagaggc 9277



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 90  caagagaagatagaagaggc 109
           ||||||||||||||||||||
Sbjct: 159 caagagaagatagaagaggc 178

to top

>emb|AL096770.17|HSBA150A6 Human DNA sequence from clone RP11-150A6 on chromosome 6 Contains genes
             OR5U1, OR5V1 and OR12D3 for olfactory receptors 5U1, 5V1
             and 12D3, the 3' end of olfactory receptor 2B4 pseudogene
             OR2B4P, a DDX6 (DEAD/H (Asp-Glu-Ala-Asp/His) box
             polypeptide 6 (RNA helicase, 54kD)) pseudogene, STSs and
             GSSs, complete sequence
          Length = 97392

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 43    cacacgagttgctgcagtttcttt 66
             ||||||||||| ||||||||||||
Sbjct: 61819 cacacgagttgatgcagtttcttt 61842

to top

>gb|U72096.1|HIVU72096 HIV-1 clone pMCE31.3 from Canada, 5' long terminal repeat, partial
           sequence
          Length = 412

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 90  caagagaagatagaagaggc 109
           ||||||||||||||||||||
Sbjct: 11  caagagaagatagaagaggc 30

to top

>gb|U72095.1|HIVU72095 HIV-1 clone pMCE31.1 from Canada, 5' long terminal repeat, partial
           sequence
          Length = 413

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 90  caagagaagatagaagaggc 109
           ||||||||||||||||||||
Sbjct: 11  caagagaagatagaagaggc 30

to top

>gb|AY856764.1| HIV-1 isolate 4035 from France nef protein (nef) gene, complete cds
          Length = 618

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 90  caagagaagatagaagaggc 109
           ||||||||||||||||||||
Sbjct: 448 caagagaagatagaagaggc 467

to top

>gb|U26937.1|ATU26937 Arabidopsis thaliana clone myb7 DNA-binding protein mRNA, complete
           cds
          Length = 844

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 233 ccagacttgtctgtttcctc 252
           ||||||||||||||||||||
Sbjct: 493 ccagacttgtctgtttcctc 474

to top

>gb|U26137.1|HIV1U26137 Human immunodeficiency virus type 1 patient 50495 clone 8 nef
           protein (nef) gene, complete cds
          Length = 624

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 90  caagagaagatagaagaggc 109
           ||||||||||||||||||||
Sbjct: 454 caagagaagatagaagaggc 473

to top

>emb|AL359402.3|CNS05TEX Human chromosome 14 DNA sequence BAC C-2273N11 of library CalTech-D
             from chromosome 14 of Homo sapiens (Human), complete
             sequence
          Length = 119296

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 156   aaatttgttgccttgtattt 175
             ||||||||||||||||||||
Sbjct: 31626 aaatttgttgccttgtattt 31645

to top

>emb|AL133223.5|CNS01DU8 Human chromosome 14 DNA sequence BAC R-114H15 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 140292

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 156   aaatttgttgccttgtattt 175
             ||||||||||||||||||||
Sbjct: 31023 aaatttgttgccttgtattt 31004


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,061,809
Number of Sequences: 3902068
Number of extensions: 4061809
Number of successful extensions: 78713
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 78579
Number of HSP's gapped (non-prelim): 134
length of query: 387
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 365
effective length of database: 17,147,199,772
effective search space: 6258727916780
effective search space used: 6258727916780
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

to top

full-length cDNA and EST

Clone Information

BLAST Search Result