>RDRP_PVXHB (Q07630) RNA replication protein (165 kDa protein) (ORF 1 protein)|
           [Includes: RNA-directed RNA polymerase (EC 2.7.7.48);
           Helicase (EC 3.6.1.-)]
          Length = 1456

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 17/65 (26%), Positives = 27/65 (41%)
 Frame = +1

Query: 82  GAYNTEL*HQEGTNISKCHWRHKGFR*QTVHQHQNSRKTDTSSHSANLHYKWTFLAGHLA 261
           GAY+ E  H +   + K  WR        +  H N       +H+  +  + +F A HL 
Sbjct: 212 GAYHHEFSHLQSVKVGKIKWRDPK---DGLLGHLNYTHEQVDTHTVTVQLQESFAANHLY 268

Query: 262 LEQRG 276
             +RG
Sbjct: 269 CIRRG 273

>VGLP_BEV (P23052) Peplomer glycoprotein precursor|
          Length = 1581

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 16/54 (29%), Positives = 23/54 (42%)
 Frame = -1

Query: 170 TVCYLKPLCLQWHLEMFVPS*CHNSVLYAPDAIFL*VGELCFFTFGTIIIGWQY 9
           T+C+  P         FV   C+N+ LY PDA+F         T  + +  W Y
Sbjct: 334 TLCFGSPF--------FVAQECYNNALYLPDAVFT--------TLFSTLFSWDY 371

>RSE1_KLULA (Q6CXH8) Pre-mRNA-splicing factor RSE1|
          Length = 1269

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -2

Query: 142  SSGI*RCLYLLDVIIQCYMHLTPSFYELVNYV 47
            +S I  C Y L+ +   YM+ TP  +E+VN++
Sbjct: 1086 ASNIKACQYTLETLCHMYMNDTPMKFEIVNHM 1117

>RDRP_PVXX3 (P17779) RNA replication protein (165 kDa protein) (ORF 1 protein)|
           [Includes: RNA-directed RNA polymerase (EC 2.7.7.48);
           Helicase (EC 3.6.1.-)]
          Length = 1456

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 17/65 (26%), Positives = 26/65 (40%)
 Frame = +1

Query: 82  GAYNTEL*HQEGTNISKCHWRHKGFR*QTVHQHQNSRKTDTSSHSANLHYKWTFLAGHLA 261
           GAY+ E  H +   + K  WR       +   H N        H+  +  + +F A HL 
Sbjct: 212 GAYHHEFAHLQWLKVGKIKWRDPK---DSFLGHLNYTTEQVEMHTVTVQLQESFAANHLY 268

Query: 262 LEQRG 276
             +RG
Sbjct: 269 CIRRG 273

>RDRP_PVX (P09395) RNA replication protein (165 kDa protein) (ORF 1 protein)|
           [Includes: RNA-directed RNA polymerase (EC 2.7.7.48);
           Helicase (EC 3.6.1.-)]
          Length = 1456

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 17/65 (26%), Positives = 26/65 (40%)
 Frame = +1

Query: 82  GAYNTEL*HQEGTNISKCHWRHKGFR*QTVHQHQNSRKTDTSSHSANLHYKWTFLAGHLA 261
           GAY+ E  H +   + K  WR       +   H N        H+  +  + +F A HL 
Sbjct: 212 GAYHHEFSHLQWLKVGKIKWRDPK---DSFLGHLNYTTEQVEMHTVTVQLQESFAANHLY 268

Query: 262 LEQRG 276
             +RG
Sbjct: 269 CIRRG 273

>STP2_PANPA (Q9N1A6) Nuclear transition protein 2 (TP-2) (TP2) (Fragment)|
          Length = 133

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
 Frame = +1

Query: 43  KKHNSP-THRKMASGAY--NTEL*HQEGTNISKCHWRHKGFR*QTVHQHQNSRKTDTSSH 213
           K H+ P TH ++ S +   +    H   T    C   H+G R ++  Q   S +  T +H
Sbjct: 4   KTHSLPITHTQLHSNSQPQSCTCTHHRQTFSQSCRQSHRGSRSRSSSQSPASHRNPTGAH 63

Query: 214 SANLH 228
           S++ H
Sbjct: 64  SSSGH 68


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,923,260
Number of Sequences: 219361
Number of extensions: 835563
Number of successful extensions: 1884
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1881
length of database: 80,573,946
effective HSP length: 85
effective length of database: 61,928,261
effective search space used: 1486278264
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)