ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl21c01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SAK1_SCHPO (P48383) Protein sak1 30 3.5
2JHD1_EMENI (Q5AW75) JmjC domain-containing histone demethylation... 29 5.9

>SAK1_SCHPO (P48383) Protein sak1|
          Length = 766

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = +1

Query: 157 RRSFPSIKSRKISSTCYYIVMYGSDERSGSDAISRVRADADRP-TDISCSTF 309
           R  FPSIK+R++    +    Y   +  G D+  R+R  +D   + +SCS+F
Sbjct: 148 RLLFPSIKTRRLGMRGHSKYHYCGIKLRGQDSFRRLRTFSDSSLSPVSCSSF 199



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>JHD1_EMENI (Q5AW75) JmjC domain-containing histone demethylation protein 1 (EC|
           1.14.11.-)
          Length = 1407

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
 Frame = +2

Query: 56  PNLTATLKTRAASMLHQA*QKADH----PTNSLTCSLTGVVSLRSNHGRSAALVTTLSCM 223
           P  TA  +T  AS    A   +DH    PT+          S RS HGRS++ + TL+ +
Sbjct: 33  PCSTADYRTYRASREISASATSDHVRSTPTDKRPSPADVPASHRSGHGRSSSTIDTLATI 92

Query: 224 A 226
           A
Sbjct: 93  A 93


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.316    0.130    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,346,845
Number of Sequences: 219361
Number of extensions: 751032
Number of successful extensions: 1833
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1832
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2618960580
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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