ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl21b12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1YGB5_YEAST (P33199) Hypothetical 15.0 kDa protein in PDR6-PDR1 i... 28 4.3
2K6PF2_SYNY3 (Q55988) 6-phosphofructokinase 2 (EC 2.7.1.11) (Phos... 28 5.6
3Y1067_METMP (Q6LYC4) Putative iron-sulfur protein MMP1067 27 9.6
4Y092_METJA (Q57557) Putative iron-sulfur protein MJ0092 27 9.6

>YGB5_YEAST (P33199) Hypothetical 15.0 kDa protein in PDR6-PDR1 intergenic|
           region
          Length = 130

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +2

Query: 8   DISSTCFQNLASHDKLSAHYFLDPASNTI 94
           D+ S CF N    D LS + FL P S+ +
Sbjct: 72  DVDSLCFSNCFQPDALSGNVFLPPRSSNM 100



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>K6PF2_SYNY3 (Q55988) 6-phosphofructokinase 2 (EC 2.7.1.11) (Phosphofructokinase|
           2) (Phosphohexokinase 2)
          Length = 384

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
 Frame = -3

Query: 255 LLQAFASEDGQYAVKMLLSGGL-IVVIPRITPCLSL*L---AVLLFVTVRRSGLMSLSIV 88
           ++Q    + G   +   ++GG  I++IP ITPCL+  +        + +R+SG     IV
Sbjct: 184 IVQVMGRDAGHLTLHAGIAGGADIILIPEITPCLTSEIIRNCCYQLMNLRKSGRHFALIV 243

Query: 87  LDAG 76
           +  G
Sbjct: 244 ISEG 247



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>Y1067_METMP (Q6LYC4) Putative iron-sulfur protein MMP1067|
          Length = 494

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = -3

Query: 279 QVAFNAGKLLQAFASEDGQYAVKMLLSGGLIVVIPRITPC 160
           +VAF  G L+     E G+ A+++L + G+ V+IP+   C
Sbjct: 264 RVAFFTGCLVDFRLQEIGKSAIRVLNAHGVSVIIPKNQVC 303



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>Y092_METJA (Q57557) Putative iron-sulfur protein MJ0092|
          Length = 489

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = -3

Query: 303 HEAPKVQAQVAFNAGKLLQAFASEDGQYAVKMLLSGGLIVVIPRITPC 160
           + A   + +VAF  G L+       G+ A+K+L + G+ VVIP+   C
Sbjct: 253 YPAESEKLRVAFFTGCLVDFRLQNVGKDAIKVLNAHGVSVVIPKNQVC 300


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,514,940
Number of Sequences: 219361
Number of extensions: 952900
Number of successful extensions: 2459
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2459
length of database: 80,573,946
effective HSP length: 90
effective length of database: 60,831,456
effective search space used: 1459954944
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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