>MKS1_YEAST (P34072) Negative regulator of RAS-cAMP pathway|
          Length = 584

 Score = 29.3 bits (64), Expect = 4.2
 Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 9/87 (10%)
 Frame = +1

Query: 79  PKDHNIKPSSHRPNTKTQSIV-IEAMNMPESLNNAHILVRM--------ETGHIYHSLAP 231
           P  + IK    +P+ KT ++  + +++ P+  NN  + + +        E+ H+Y S AP
Sbjct: 418 PSANGIK--QQKPSLKTSNVTALASLSPPQPSNNERLSMDIQKDFKTDNESNHLYESNAP 475

Query: 232 LSAVCFPFLELQACIYPTATPIYFHLP 312
           L+A           I PTA   +  LP
Sbjct: 476 LTA---------QTILPTALSTHMFLP 493

>TGM5_HUMAN (O43548) Protein-glutamine gamma-glutamyltransferase 5 (EC|
           2.3.2.13) (Transglutaminase-5) (TGase 5)
           (Transglutaminase X) (TGase X) (TGX) (TG(X))
          Length = 719

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +2

Query: 272 AFILQLPPSISTFLASSSYSQHTKYSTSEQLVR 370
           AFI   P    T+    SYSQ+++Y ++++L+R
Sbjct: 562 AFITLSPKEAKTYPCKISYSQYSQYLSTDKLIR 594

>PUR4_HUMAN (O15067) Phosphoribosylformylglycinamidine synthase (EC 6.3.5.3)|
           (FGAM synthase) (FGAMS) (Formylglycinamide ribotide
           amidotransferase) (FGARAT) (Formylglycinamide ribotide
           synthetase)
          Length = 1338

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = -2

Query: 93  IVVLGVGRLSIRKERKDIGLLLLSW 19
           I +LG GRL++ K  +++GL L SW
Sbjct: 174 INILGEGRLALEKANQELGLALDSW 198

>DCR1B_HUMAN (Q9H816) DNA cross-link repair 1B protein (hSNM1B)|
          Length = 532

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 25/103 (24%), Positives = 41/103 (39%), Gaps = 8/103 (7%)
 Frame = +2

Query: 92  ISNPRRTDQIQKLS--------QLSSKL*TCQNL*TMHTSSSEWKQGTYTIALLPCQRFV 247
           + +PRR + +Q L         + + ++    ++   H++   W Q   TIA+LP  R +
Sbjct: 202 VLSPRRLELVQLLGLADVFTVEEKAGRIHAVDHMEICHSNMLRWNQTHPTIAILPTSRKI 261

Query: 248 SHFLSYKHAFILQLPPSISTFLASSSYSQHTKYSTSEQLVRAL 376
                  H  I  +P           YS H+ YS     V AL
Sbjct: 262 HS----SHPDIHVIP-----------YSDHSSYSELRAFVAAL 289


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,501,571
Number of Sequences: 219361
Number of extensions: 1469322
Number of successful extensions: 3829
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3829
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2453576370
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)