ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl21b04 |
|---|---|
| Clone Library Name | barley_pub |
>XSP1_ARATH (Q9LLL8) Xylem serine proteinase 1 precursor (EC 3.4.21.-) (AtXSP1)| (Cucumisin-like protein) Length = 749 Score = 54.7 bits (130), Expect = 5e-08 Identities = 29/83 (34%), Positives = 47/83 (56%) Frame = -3 Query: 346 RTVTNVGEVNSVYHAAVQSPMGVKMEVFPPVLMFDAANKVQTYQVKLSPMWKSHGDYTFG 167 R VTNVG +SVY A V++P GV++ V P L F A++ ++++V + + G G Sbjct: 667 RRVTNVGPPSSVYTATVRAPKGVEITVEPQSLSFSKASQKRSFKVVVKAKQMTPGKIVSG 726 Query: 166 SLTWHNDQKAVRIPVVARITTQE 98 L W + + +VR P+V T + Sbjct: 727 LLVWKSPRHSVRSPIVIYSPTSD 749
>SUBL_ARATH (O65351) Subtilisin-like protease precursor (EC 3.4.21.-)| (Cucumisin-like serine protease) Length = 757 Score = 44.3 bits (103), Expect = 7e-05 Identities = 27/76 (35%), Positives = 38/76 (50%), Gaps = 1/76 (1%) Frame = -3 Query: 346 RTVTNVGEVNSVYHAAVQSPMGVKMEVFPPVLMFDAANKVQTYQVKLS-PMWKSHGDYTF 170 RTVT+VG + GVK+ V P VL F AN+ ++Y V + K G +F Sbjct: 677 RTVTSVGGAGTYSVKVTSETTGVKISVEPAVLNFKEANEKKSYTVTFTVDSSKPSGSNSF 736 Query: 169 GSLTWHNDQKAVRIPV 122 GS+ W + + V PV Sbjct: 737 GSIEWSDGKHVVGSPV 752
>MUTS2_THETN (Q8R9D0) MutS2 protein| Length = 790 Score = 30.0 bits (66), Expect = 1.4 Identities = 17/39 (43%), Positives = 19/39 (48%) Frame = +3 Query: 183 PCDFHIGDSFT*YV*TLLAASNIRTGGKTSILTPIGLCT 299 P D HIG FT L + TGGKT L +GL T Sbjct: 318 PIDIHIGREFT-----TLVITGPNTGGKTVTLKTVGLLT 351
>RGYR_ARCFU (O29238) Reverse gyrase [Includes: Helicase (EC 3.6.1.-);| Topoisomerase (EC 5.99.1.3)] Length = 1054 Score = 28.9 bits (63), Expect = 3.2 Identities = 12/36 (33%), Positives = 20/36 (55%) Frame = -3 Query: 370 LRQPIPVYRTVTNVGEVNSVYHAAVQSPMGVKMEVF 263 LR P+P Y T T + + N + +V+ M + E+F Sbjct: 767 LRTPLPPYTTETMLSDANRILKFSVKQTMQIAQELF 802
>SPEH2_PYRAE (Q8ZWK3) S-adenosylmethionine decarboxylase proenzyme 2 (EC| 4.1.1.50) (AdoMetDC 2) (SamDC 2) [Contains: S-adenosylmethionine decarboxylase 2 beta chain; S-adenosylmethionine decarboxylase 2 alpha chain] Length = 126 Score = 28.1 bits (61), Expect = 5.4 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 3/57 (5%) Frame = +2 Query: 197 HRGQLHLIRLN---FVGSVEHKNRWEDLHLDSHRALHCGMVHRIDLTDVGHCPIHGD 358 H ++HL+ +N F G + L L+SH A+H V+ DV C H D Sbjct: 43 HIAKMHLVEVNSWRFKGGDKEGVSVIALVLESHIAIHTWPVYNFATVDVYTCGEHSD 99
>RPB5_SCHPO (Q09191) DNA-directed RNA polymerases II 24 kDa polypeptide (EC| 2.7.7.6) (RNA polymerase II subunit 5) Length = 210 Score = 28.1 bits (61), Expect = 5.4 Identities = 11/21 (52%), Positives = 14/21 (66%) Frame = +2 Query: 266 DLHLDSHRALHCGMVHRIDLT 328 DL LD +A+HCGM +D T Sbjct: 35 DLTLDQFKAMHCGMGRNLDRT 55
>NOSZ_PSEFL (Q9F0W4) Nitrous-oxide reductase precursor (EC 1.7.99.6) (N(2)OR)| (N2O reductase) Length = 639 Score = 27.7 bits (60), Expect = 7.1 Identities = 12/37 (32%), Positives = 20/37 (54%) Frame = -3 Query: 370 LRQPIPVYRTVTNVGEVNSVYHAAVQSPMGVKMEVFP 260 ++Q V T+TN+ ++ V H V + G ME+ P Sbjct: 563 VKQGNEVTVTITNIDQIEDVSHGFVMTNHGASMEISP 599
>KCMA1_RAT (Q62976) Calcium-activated potassium channel alpha subunit 1| (Calcium-activated potassium channel, subfamily M, alpha subunit 1) (Maxi K channel) (MaxiK) (BK channel) (K(VCA)alpha) (BKCA alpha) (KCa1.1) (Slowpoke homolog) (Slo homolog) (Slo-alp Length = 1210 Score = 27.3 bits (59), Expect = 9.3 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%) Frame = +2 Query: 176 VVPMRLPHRGQLHLIRLNFVGSVEH-KNRWEDLH 274 V+P+R + L + FVGS+E+ K WE LH Sbjct: 808 VMPLRASNFHYHELKHIVFVGSIEYLKREWETLH 841
>KCMA1_RABIT (Q9BG98) Calcium-activated potassium channel alpha subunit 1| (Calcium-activated potassium channel, subfamily M, alpha subunit 1) (Maxi K channel) (MaxiK) (BK channel) (K(VCA)alpha) (BKCA alpha) (KCa1.1) (Slowpoke homolog) (Slo homolog) (Slo-a Length = 1179 Score = 27.3 bits (59), Expect = 9.3 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%) Frame = +2 Query: 176 VVPMRLPHRGQLHLIRLNFVGSVEH-KNRWEDLH 274 V+P+R + L + FVGS+E+ K WE LH Sbjct: 804 VMPLRASNFHYHELKHIVFVGSIEYLKREWETLH 837
>KCMA1_MACMU (O18867) Calcium-activated potassium channel alpha subunit 1| (Calcium-activated potassium channel, subfamily M, alpha subunit 1) (Maxi K channel) (MaxiK) (BK channel) (K(VCA)alpha) (BKCA alpha) (KCa1.1) (Slowpoke homolog) (Slo homolog) (Slo-a Length = 1151 Score = 27.3 bits (59), Expect = 9.3 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%) Frame = +2 Query: 176 VVPMRLPHRGQLHLIRLNFVGSVEH-KNRWEDLH 274 V+P+R + L + FVGS+E+ K WE LH Sbjct: 776 VMPLRASNFHYHELKHIVFVGSIEYLKREWETLH 809
>CYLC2_HUMAN (Q14093) Cylicin-2 (Cylicin II) (Multiple-band polypeptide II)| Length = 348 Score = 27.3 bits (59), Expect = 9.3 Identities = 12/28 (42%), Positives = 19/28 (67%) Frame = -3 Query: 367 RQPIPVYRTVTNVGEVNSVYHAAVQSPM 284 RQP+ +YR++ + E SVY AA + P+ Sbjct: 72 RQPLWMYRSLMRISERPSVYLAARRQPL 99
>KCMA1_MOUSE (Q08460) Calcium-activated potassium channel alpha subunit 1| (Calcium-activated potassium channel, subfamily M, alpha subunit 1) (Maxi K channel) (MaxiK) (BK channel) (K(VCA)alpha) (BKCA alpha) (KCa1.1) (Slowpoke homolog) (Slo homolog) (Slo-a Length = 1209 Score = 27.3 bits (59), Expect = 9.3 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%) Frame = +2 Query: 176 VVPMRLPHRGQLHLIRLNFVGSVEH-KNRWEDLH 274 V+P+R + L + FVGS+E+ K WE LH Sbjct: 807 VMPLRASNFHYHELKHIVFVGSIEYLKREWETLH 840
>KCMA1_CANFA (Q28265) Calcium-activated potassium channel alpha subunit 1| (Calcium-activated potassium channel, subfamily M, alpha subunit 1) (Maxi K channel) (MaxiK) (BK channel) (K(VCA)alpha) (BKCA alpha) (KCa1.1) (Slowpoke homolog) (Slo homolog) (Slo-a Length = 1159 Score = 27.3 bits (59), Expect = 9.3 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%) Frame = +2 Query: 176 VVPMRLPHRGQLHLIRLNFVGSVEH-KNRWEDLH 274 V+P+R + L + FVGS+E+ K WE LH Sbjct: 741 VMPLRASNFHYHELKHIVFVGSIEYLKREWETLH 774
>Y124_EHRRW (Q5HC48) UPF0168 protein Erum1280/ERWE_CDS_01240| Length = 153 Score = 27.3 bits (59), Expect = 9.3 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 8/61 (13%) Frame = -1 Query: 222 RIR*SCPLCGSRMGTTHLVALLGIMT-KKQ*GFQLWPGLQL-------KKSRRMLHNEIK 67 R R CP+C SR TT + L +M KK G + + +L K R + H++I Sbjct: 26 RRRRVCPVCNSRFTTTEKLLLRSLMVIKKNGGLEQFDKKKLLSSILIATKKRPVSHDKIN 85 Query: 66 M 64 M Sbjct: 86 M 86
>Y120_EHRRG (Q5FFB2) UPF0168 protein ERGA_CDS_01200| Length = 153 Score = 27.3 bits (59), Expect = 9.3 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 8/61 (13%) Frame = -1 Query: 222 RIR*SCPLCGSRMGTTHLVALLGIMT-KKQ*GFQLWPGLQL-------KKSRRMLHNEIK 67 R R CP+C SR TT + L +M KK G + + +L K R + H++I Sbjct: 26 RRRRVCPVCNSRFTTTEKLLLRSLMVIKKNGGLEQFDKKKLLSSILIATKKRPVSHDKIN 85 Query: 66 M 64 M Sbjct: 86 M 86
>KCMA1_HUMAN (Q12791) Calcium-activated potassium channel alpha subunit 1| (Calcium-activated potassium channel, subfamily M, alpha subunit 1) (Maxi K channel) (MaxiK) (BK channel) (K(VCA)alpha) (BKCA alpha) (KCa1.1) (Slowpoke homolog) (Slo homolog) (Slo-a Length = 1236 Score = 27.3 bits (59), Expect = 9.3 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%) Frame = +2 Query: 176 VVPMRLPHRGQLHLIRLNFVGSVEH-KNRWEDLH 274 V+P+R + L + FVGS+E+ K WE LH Sbjct: 861 VMPLRASNFHYHELKHIVFVGSIEYLKREWETLH 894
>KCMA1_BOVIN (Q28204) Calcium-activated potassium channel alpha subunit 1| (Calcium-activated potassium channel, subfamily M, alpha subunit 1) (Maxi K channel) (MaxiK) (BK channel) (K(VCA)alpha) (BKCA alpha) (KCa1.1) (Slowpoke homolog) (Slo homolog) (Slo-a Length = 1166 Score = 27.3 bits (59), Expect = 9.3 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%) Frame = +2 Query: 176 VVPMRLPHRGQLHLIRLNFVGSVEH-KNRWEDLH 274 V+P+R + L + FVGS+E+ K WE LH Sbjct: 791 VMPLRASNFHYHELKHIVFVGSIEYLKREWETLH 824
>NOSZ_PSEST (P19573) Nitrous-oxide reductase precursor (EC 1.7.99.6) (N(2)OR)| (N2O reductase) Length = 638 Score = 27.3 bits (59), Expect = 9.3 Identities = 13/37 (35%), Positives = 20/37 (54%) Frame = -3 Query: 370 LRQPIPVYRTVTNVGEVNSVYHAAVQSPMGVKMEVFP 260 ++Q V T+TN+ ++ V H V GV ME+ P Sbjct: 562 VKQGDEVTVTITNIDQIEDVSHGFVVVNHGVSMEISP 598
>NUOE2_RHIME (P56910) NADH-quinone oxidoreductase chain E 2 (EC 1.6.99.5) (NADH| dehydrogenase I, chain E 2) (NDH-1, chain E 2) Length = 168 Score = 27.3 bits (59), Expect = 9.3 Identities = 16/37 (43%), Positives = 17/37 (45%) Frame = -1 Query: 261 HLFLCSTLPTKFRRIR*SCPLCGSRMGTTHLVALLGI 151 HL LC + SC LCGS THL LGI Sbjct: 73 HLQLCDNV---------SCMLCGSEALLTHLETTLGI 100
>NOSZ1_PSEAE (Q9HYL2) Nitrous-oxide reductase precursor (EC 1.7.99.6) (N(2)OR)| (N2O reductase) Length = 636 Score = 27.3 bits (59), Expect = 9.3 Identities = 14/37 (37%), Positives = 20/37 (54%) Frame = -3 Query: 370 LRQPIPVYRTVTNVGEVNSVYHAAVQSPMGVKMEVFP 260 ++Q V T+TN+ E+ V H V GV ME+ P Sbjct: 560 VKQGDEVTVTITNLDEIEDVTHGFVMVNHGVCMEISP 596
>KCMA1_PIG (O18866) Calcium-activated potassium channel alpha subunit 1| (Calcium-activated potassium channel, subfamily M, alpha subunit 1) (Maxi K channel) (MaxiK) (BK channel) (K(VCA)alpha) (BKCA alpha) (KCa1.1) (Slowpoke homolog) (Slo homolog) (Slo-alp Length = 1152 Score = 27.3 bits (59), Expect = 9.3 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%) Frame = +2 Query: 176 VVPMRLPHRGQLHLIRLNFVGSVEH-KNRWEDLH 274 V+P+R + L + FVGS+E+ K WE LH Sbjct: 777 VMPLRASNFHYHELKHIVFVGSIEYLKREWETLH 810 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 62,379,928 Number of Sequences: 219361 Number of extensions: 1294493 Number of successful extensions: 3243 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 3193 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3242 length of database: 80,573,946 effective HSP length: 99 effective length of database: 58,857,207 effective search space used: 1412572968 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
