Clone Information

BLAST Search Result

Clone Name	rbastl21b04
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	emb\|AJ222782.1\|HVJ222782 Hordeum vulgare mRNA for subtilisin-lik...	484	e-133
2	ref\|NM_190891.1\| Oryza sativa (japonica cultivar-group), predic...	76	9e-11
3	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	76	9e-11
4	dbj\|AP003299.3\| Oryza sativa (japonica cultivar-group) genomic D...	76	9e-11
5	ref\|NM_190890.1\| Oryza sativa (japonica cultivar-group), predic...	54	3e-04
6	gb\|AF200467.1\|AF200467 Oryza sativa subtilase mRNA, complete cds	54	3e-04
7	ref\|NM_190888.1\| Oryza sativa (japonica cultivar-group), predic...	52	0.001
8	dbj\|AP003290.2\| Oryza sativa (japonica cultivar-group) genomic D...	52	0.001
9	dbj\|AK063520.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	52	0.001
10	gb\|AC125159.4\| Mus musculus BAC clone RP24-394C23 from 6, comple...	46	0.080
11	gb\|AC145810.3\| Oryza sativa (japonica cultivar-group) chromosome...	44	0.32
12	gb\|AC145366.2\| Oryza sativa (japonica cultivar-group) chromosome...	44	0.32
13	emb\|CR954286.2\|RP43001A02 Pan troglodytes chromosome X BAC RP43-...	44	0.32
14	gb\|AC093167.11\| Homo sapiens Xp BAC RP11-593P4 (Roswell Park Can...	44	0.32
15	dbj\|AP008217.1\| Oryza sativa (japonica cultivar-group) genomic D...	44	0.32
16	gb\|AC150773.2\| Xenopus tropicalis clone CH216-69F7, complete seq...	44	0.32
17	emb\|CT476801.2\| RP43-004N07, complete sequence	44	0.32
18	emb\|CR972866.3\| RP43-009N23, complete sequence	44	0.32
19	emb\|CT485784.2\| RP43-026J01, complete sequence	44	0.32
20	gb\|DP000010.1\| Oryza sativa (japonica cultivar-group) chromosome...	44	0.32
21	gb\|AC117627.16\| Mus musculus chromosome 1, clone RP23-116N6, com...	42	1.3
22	gb\|AY371730.1\| Tetrahymena thermophila micronuclear non-LTR retr...	42	1.3
23	gb\|U80847.1\| Caenorhabditis elegans cosmid C17H11, complete sequ...	42	1.3
24	gb\|AC152405.15\| Medicago truncatula clone mth2-49f2, complete se...	42	1.3
25	emb\|AL353789.18\| Human DNA sequence from clone RP11-570F6 on chr...	42	1.3
26	emb\|AL137017.9\| Human DNA sequence from clone RP11-120J1 on chro...	42	1.3
27	emb\|BX004882.10\| Zebrafish DNA sequence from clone CH211-185C9, ...	42	1.3
28	emb\|AL929022.7\| Zebrafish DNA sequence from clone CH211-112F3, c...	42	1.3
29	emb\|AL808119.6\| Mouse DNA sequence from clone RP23-70J9 on chrom...	42	1.3
30	gb\|AC166833.4\| Mus musculus BAC clone RP23-146A22 from chromosom...	40	5.0
31	gb\|AC150574.2\| Bos taurus BAC CH240-237H4 (Children's Hospital ...	40	5.0
32	gb\|AC102554.7\| Mus musculus chromosome 9, clone RP23-159E10, com...	40	5.0
33	gb\|AC146545.2\| Gasterosteus aculeatus clone CH213-80P16, complet...	40	5.0
34	emb\|CT010514.9\| Mouse DNA sequence from clone RP23-192H2 on chro...	40	5.0
35	emb\|CR936442.13\| Zebrafish DNA sequence from clone DKEY-266F7 in...	40	5.0
36	emb\|Z69302.1\|CEF40F8 Caenorhabditis elegans Cosmid F40F8, comple...	40	5.0
37	gb\|AC126695.4\| Mus musculus BAC clone RP23-313D2 from 18, comple...	40	5.0
38	gb\|AC102426.6\| Mus musculus chromosome 1, clone RP24-88A10, comp...	40	5.0
39	emb\|AL731549.11\| Human DNA sequence from clone RP11-113I9 on chr...	40	5.0
40	emb\|AL359980.9\| Human DNA sequence from clone RP5-1027O15 on chr...	40	5.0
41	emb\|AL160163.24\| Human DNA sequence from clone RP5-973N23 on chr...	40	5.0
42	emb\|AL591979.1\| Listeria monocytogenes strain EGD, complete geno...	40	5.0
43	emb\|AL596169.1\| Listeria innocua Clip11262 complete genome, segm...	40	5.0
44	gb\|AC164311.4\| Mus musculus BAC clone RP23-144H18 from chromosom...	40	5.0
45	gb\|AC109607.47\| Mus musculus strain C57BL/6J clone rp23-146a22 m...	40	5.0
46	gb\|AC110058.4\| Homo sapiens chromosome 11, clone CTD2-3012A18, c...	40	5.0
47	gb\|AC093821.3\| Homo sapiens BAC clone RP11-381N20 from 4, comple...	40	5.0
48	gb\|AC068388.7\| Homo sapiens chromosome 3, clone RP11-296M9, comp...	40	5.0
49	gb\|AC157957.3\| Pan troglodytes BAC clone CH251-43B16 from chromo...	40	5.0
50	ref\|NM_063985.2\| Caenorhabditis elegans F40F8.1 (F40F8.1) mRNA, ...	40	5.0
51	dbj\|AK031291.1\| Mus musculus 13 days embryo male testis cDNA, RI...	40	5.0
52	ref\|XM_391836.2\| PREDICTED: Apis mellifera similar to GA11443-PA...	40	5.0
53	dbj\|AP008208.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	5.0
54	gb\|AC021699.5\|AC021699 Homo sapiens chromosome 11, clone RP11-27...	40	5.0
55	gb\|AC161012.4\| Pan troglodytes BAC clone CH251-499A2 from chromo...	40	5.0
56	dbj\|AP005756.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	5.0
57	gb\|AC127465.3\| Didelphis virginiana clone LB3-97M17, complete se...	40	5.0
58	gb\|AC154341.2\| Mus musculus BAC clone RP23-240C2 from 16, comple...	40	5.0
59	gb\|AC101702.11\| Mus musculus chromosome 1, clone RP23-247G20, co...	40	5.0
60	gb\|AC133510.3\| Mus musculus BAC clone RP23-409B11 from 8, comple...	40	5.0
61	gb\|AE017262.2\| Listeria monocytogenes str. 4b F2365, complete ge...	40	5.0
62	gb\|AC165222.4\| Cavia porcellus, clone Cavia porcellus-25196157D3...	40	5.0
63	gb\|DP000023.1\| Didelphis virginiana target 1 genomic scaffold	40	5.0
64	emb\|AL805952.11\| Mouse DNA sequence from clone RP23-125H10 on ch...	40	5.0

>emb|AJ222782.1|HVJ222782 Hordeum vulgare mRNA for subtilisin-like protease, clone RG114
          Length = 320

 Score =  484 bits (244), Expect = e-133
 Identities = 250/252 (99%)
 Strand = Plus / Minus

                                                                       
Query: 121 caactggaatccttactgctttttggtcattatgccaagtaaggctaccaaatgtgtagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 caactggaatccttactgctttttggtcattatgccaagtaaggctaccaaatgtgtagt 261

                                                                       
Query: 181 ccccatgcgacttccacataggggacagcttcacctgatacgtctgaactttgttggcag 240
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ccccatgcaacttccacataggggacagcttcacctgatacgtctgaactttgttggcag 201

                                                                       
Query: 241 cgtcgaacataagaacaggtgggaagacctccatcttgactcccatcgggctctgcactg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 cgtcgaacataagaacaggtgggaagacctccatcttgactcccatcgggctctgcactg 141

                                                                       
Query: 301 cggcatggtacacagaattgacctcaccgacgttggtcactgtcctatacacggggatgg 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 140 cggcatggtacacagaattgacctcaccgacgttggtcactgtcctatacacggtgatgg 81

                       
Query: 361 gttgcctgagat 372
           ||||||||||||
Sbjct: 80  gttgcctgagat 69

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>ref|NM_190891.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2409

 Score = 75.8 bits (38), Expect = 9e-11
 Identities = 92/110 (83%)
 Strand = Plus / Minus

                                                                        
Query: 153  tgccaagtaaggctaccaaatgtgtagtccccatgcgacttccacataggggacagcttc 212
            |||||||||||||| ||||| ||||||||||| |||  |||||| | ||| || ||||| 
Sbjct: 2333 tgccaagtaaggctcccaaacgtgtagtccccctgcagcttccatagaggtgaaagcttt 2274

                                                              
Query: 213  acctgatacgtctgaactttgttggcagcgtcgaacataagaacaggtgg 262
            |||||  |||| ||||||||||| ||||| | |||||  |||||||||||
Sbjct: 2273 acctggaacgtatgaactttgtttgcagcattgaacaccagaacaggtgg 2224

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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 75.8 bits (38), Expect = 9e-11
 Identities = 92/110 (83%)
 Strand = Plus / Minus

                                                                            
Query: 153      tgccaagtaaggctaccaaatgtgtagtccccatgcgacttccacataggggacagcttc 212
                |||||||||||||| ||||| ||||||||||| |||  |||||| | ||| || ||||| 
Sbjct: 33672899 tgccaagtaaggctcccaaacgtgtagtccccctgcagcttccatagaggtgaaagcttt 33672840

                                                                  
Query: 213      acctgatacgtctgaactttgttggcagcgtcgaacataagaacaggtgg 262
                |||||  |||| ||||||||||| ||||| | |||||  |||||||||||
Sbjct: 33672839 acctggaacgtatgaactttgtttgcagcattgaacaccagaacaggtgg 33672790



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 36/39 (92%)
 Strand = Plus / Minus

                                                       
Query: 146      gtcattatgccaagtaaggctaccaaatgtgtagtcccc 184
                |||||| |||||||||||||| |||||||| ||||||||
Sbjct: 33665442 gtcattgtgccaagtaaggctgccaaatgtatagtcccc 33665404



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                      
Query: 147      tcattatgccaagtaaggctaccaaatgtgtagtcccc 184
                ||||| |||||||||||||| |||||||| ||||||||
Sbjct: 33656200 tcattgtgccaagtaaggctgccaaatgtatagtcccc 33656163

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>dbj|AP003299.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0699H05
          Length = 144850

 Score = 75.8 bits (38), Expect = 9e-11
 Identities = 92/110 (83%)
 Strand = Plus / Minus

                                                                         
Query: 153   tgccaagtaaggctaccaaatgtgtagtccccatgcgacttccacataggggacagcttc 212
             |||||||||||||| ||||| ||||||||||| |||  |||||| | ||| || ||||| 
Sbjct: 25969 tgccaagtaaggctcccaaacgtgtagtccccctgcagcttccatagaggtgaaagcttt 25910

                                                               
Query: 213   acctgatacgtctgaactttgttggcagcgtcgaacataagaacaggtgg 262
             |||||  |||| ||||||||||| ||||| | |||||  |||||||||||
Sbjct: 25909 acctggaacgtatgaactttgtttgcagcattgaacaccagaacaggtgg 25860



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 36/39 (92%)
 Strand = Plus / Minus

                                                    
Query: 146   gtcattatgccaagtaaggctaccaaatgtgtagtcccc 184
             |||||| |||||||||||||| |||||||| ||||||||
Sbjct: 18512 gtcattgtgccaagtaaggctgccaaatgtatagtcccc 18474



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                  
Query: 147  tcattatgccaagtaaggctaccaaatgtgtagtcccc 184
            ||||| |||||||||||||| |||||||| ||||||||
Sbjct: 9270 tcattgtgccaagtaaggctgccaaatgtatagtcccc 9233

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>ref|NM_190890.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2043

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 36/39 (92%)
 Strand = Plus / Minus

                                                   
Query: 146  gtcattatgccaagtaaggctaccaaatgtgtagtcccc 184
            |||||| |||||||||||||| |||||||| ||||||||
Sbjct: 1974 gtcattgtgccaagtaaggctgccaaatgtatagtcccc 1936

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>gb|AF200467.1|AF200467 Oryza sativa subtilase mRNA, complete cds
          Length = 2545

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 36/39 (92%)
 Strand = Plus / Minus

                                                   
Query: 146  gtcattatgccaagtaaggctaccaaatgtgtagtcccc 184
            |||||| |||||||||||||| |||||||| ||||||||
Sbjct: 2146 gtcattgtgccaagtaaggctgccaaatgtatagtcccc 2108

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>ref|NM_190888.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2214

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                  
Query: 147  tcattatgccaagtaaggctaccaaatgtgtagtcccc 184
            ||||| |||||||||||||| |||||||| ||||||||
Sbjct: 2144 tcattgtgccaagtaaggctgccaaatgtatagtcccc 2107

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>dbj|AP003290.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0684C02
          Length = 80086

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                   
Query: 147   tcattatgccaagtaaggctaccaaatgtgtagtcccc 184
             ||||| |||||||||||||| |||||||| ||||||||
Sbjct: 71072 tcattgtgccaagtaaggctgccaaatgtatagtcccc 71035

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>dbj|AK063520.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-116-H07, full
            insert sequence
          Length = 2462

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                  
Query: 147  tcattatgccaagtaaggctaccaaatgtgtagtcccc 184
            ||||| |||||||||||||| |||||||| ||||||||
Sbjct: 2159 tcattgtgccaagtaaggctgccaaatgtatagtcccc 2122

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>gb|AC125159.4| Mus musculus BAC clone RP24-394C23 from 6, complete sequence
          Length = 190966

 Score = 46.1 bits (23), Expect = 0.080
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 50     agaaatagaaatggcatttttat 72
              |||||||||||||||||||||||
Sbjct: 126798 agaaatagaaatggcatttttat 126776

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>gb|AC145810.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
            OSJNBb0059C14, complete sequence
          Length = 142138

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                          
Query: 152  atgccaagtaaggctaccaaatgtgtagtc 181
            |||||||| ||||||||||||||| |||||
Sbjct: 7332 atgccaagcaaggctaccaaatgtatagtc 7361

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>gb|AC145366.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0014O08
              map near S2137, complete sequence
          Length = 134033

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                            
Query: 152    atgccaagtaaggctaccaaatgtgtagtc 181
              |||||||| ||||||||||||||| |||||
Sbjct: 119727 atgccaagcaaggctaccaaatgtatagtc 119756

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>emb|CR954286.2|RP43001A02 Pan troglodytes chromosome X BAC RP43-001A02, complete sequence
          Length = 186572

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 55   tagaaatggcatttttatttcattat 80
            |||||||||||||||||| |||||||
Sbjct: 6748 tagaaatggcatttttatatcattat 6723

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>gb|AC093167.11| Homo sapiens Xp BAC RP11-593P4 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 75001

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 55    tagaaatggcatttttatttcattat 80
             |||||||||||||||||| |||||||
Sbjct: 26160 tagaaatggcatttttatatcattat 26135

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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                             
Query: 152     atgccaagtaaggctaccaaatgtgtagtc 181
               |||||||| ||||||||||||||| |||||
Sbjct: 8708561 atgccaagcaaggctaccaaatgtatagtc 8708590

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>gb|AC150773.2| Xenopus tropicalis clone CH216-69F7, complete sequence
          Length = 115925

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 39    ttttttattaaagaaatagaaa 60
             ||||||||||||||||||||||
Sbjct: 69227 ttttttattaaagaaatagaaa 69248

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>emb|CT476801.2| RP43-004N07, complete sequence
          Length = 182257

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 55     tagaaatggcatttttatttcattat 80
              |||||||||||||||||| |||||||
Sbjct: 128936 tagaaatggcatttttatatcattat 128911

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>emb|CR972866.3| RP43-009N23, complete sequence
          Length = 201804

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 55     tagaaatggcatttttatttcattat 80
              |||||||||||||||||| |||||||
Sbjct: 152673 tagaaatggcatttttatatcattat 152648

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>emb|CT485784.2| RP43-026J01, complete sequence
          Length = 201375

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 55     tagaaatggcatttttatttcattat 80
              |||||||||||||||||| |||||||
Sbjct: 115052 tagaaatggcatttttatatcattat 115027

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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                             
Query: 152     atgccaagtaaggctaccaaatgtgtagtc 181
               |||||||| ||||||||||||||| |||||
Sbjct: 8779324 atgccaagcaaggctaccaaatgtatagtc 8779353

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>gb|AC117627.16| Mus musculus chromosome 1, clone RP23-116N6, complete sequence
          Length = 201995

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 41    ttttattaaagaaatagaaat 61
             |||||||||||||||||||||
Sbjct: 38670 ttttattaaagaaatagaaat 38650

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>gb|AY371730.1| Tetrahymena thermophila micronuclear non-LTR retrotransposon REP3,
            partial sequence
          Length = 5350

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 37   tattttttattaaagaaatagaaat 61
            |||||||||||||| ||||||||||
Sbjct: 3703 tattttttattaaataaatagaaat 3679

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>gb|U80847.1| Caenorhabditis elegans cosmid C17H11, complete sequence
          Length = 34638

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 30    gtgggtctattttttattaaa 50
             |||||||||||||||||||||
Sbjct: 21247 gtgggtctattttttattaaa 21227

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>gb|AC152405.15| Medicago truncatula clone mth2-49f2, complete sequence
          Length = 126818

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 49    aagaaatagaaatggcatttt 69
             |||||||||||||||||||||
Sbjct: 78303 aagaaatagaaatggcatttt 78323

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>emb|AL353789.18| Human DNA sequence from clone RP11-570F6 on chromosome 13 Contains the 5'
              end of the WASF3 gene for WAS protein family, member 3
              (WASP family Verprolin-homologous protein 3(SCAR3, Scar3,
              WAVE3, KIAA0900)), a ribosomal protein S3A (RPS3A)(FTE1)
              pseudogene and a CpG island, complete sequence
          Length = 166787

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 58     aaatggcatttttatttcatt 78
              |||||||||||||||||||||
Sbjct: 135514 aaatggcatttttatttcatt 135494

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>emb|AL137017.9| Human DNA sequence from clone RP11-120J1 on chromosome 9 Contains the
             3' end of a novel gene and a CpG island, complete sequence
          Length = 167585

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 43    ttattaaagaaatagaaatgg 63
             |||||||||||||||||||||
Sbjct: 21399 ttattaaagaaatagaaatgg 21419

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>emb|BX004882.10| Zebrafish DNA sequence from clone CH211-185C9, complete sequence
          Length = 137477

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 37    tattttttattaaagaaatagaaat 61
             |||||||||||||||||||| ||||
Sbjct: 81027 tattttttattaaagaaataaaaat 81051

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>emb|AL929022.7| Zebrafish DNA sequence from clone CH211-112F3, complete sequence
          Length = 179671

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 37     tattttttattaaagaaatagaaat 61
              |||||||||||||||||||| ||||
Sbjct: 156639 tattttttattaaagaaataaaaat 156663

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>emb|AL808119.6| Mouse DNA sequence from clone RP23-70J9 on chromosome 2, complete
              sequence
          Length = 228870

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 54     atagaaatggcatttttattt 74
              |||||||||||||||||||||
Sbjct: 106490 atagaaatggcatttttattt 106510

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>gb|AC166833.4| Mus musculus BAC clone RP23-146A22 from chromosome 8, complete sequence
          Length = 200720

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 23     ctgtgatgtgggtctatttt 42
              ||||||||||||||||||||
Sbjct: 179907 ctgtgatgtgggtctatttt 179888

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>gb|AC150574.2| Bos taurus  BAC CH240-237H4 (Children's Hospital Oakland Research
              Institute Bovine BAC Library (male)) complete sequence
          Length = 142758

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 65     atttttatttcattatgcaa 84
              ||||||||||||||||||||
Sbjct: 121469 atttttatttcattatgcaa 121488

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>gb|AC102554.7| Mus musculus chromosome 9, clone RP23-159E10, complete sequence
          Length = 197397

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 258    ggtgggaagacctccatcttgactccca 285
              ||||| ||| ||||||||||||||||||
Sbjct: 123046 ggtggcaagtcctccatcttgactccca 123073

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>gb|AC146545.2| Gasterosteus aculeatus clone CH213-80P16, complete sequence
          Length = 195850

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 141   ttttggtcattatgccaagt 160
             ||||||||||||||||||||
Sbjct: 35480 ttttggtcattatgccaagt 35461

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>emb|CT010514.9| Mouse DNA sequence from clone RP23-192H2 on chromosome 9, complete
             sequence
          Length = 216181

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 258   ggtgggaagacctccatcttgactccca 285
             ||||| ||| ||||||||||||||||||
Sbjct: 51780 ggtggcaagtcctccatcttgactccca 51807

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>emb|CR936442.13| Zebrafish DNA sequence from clone DKEY-266F7 in linkage group 19,
             complete sequence
          Length = 244065

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 60    atggcatttttatttcatta 79
             ||||||||||||||||||||
Sbjct: 88355 atggcatttttatttcatta 88374

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>emb|Z69302.1|CEF40F8 Caenorhabditis elegans Cosmid F40F8, complete sequence
          Length = 26497

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 230  tttgttggcagcgtcgaaca 249
            ||||||||||||||||||||
Sbjct: 3834 tttgttggcagcgtcgaaca 3815

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>gb|AC126695.4| Mus musculus BAC clone RP23-313D2 from 18, complete sequence
          Length = 171427

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 200    aggggacagcttcacctgat 219
              ||||||||||||||||||||
Sbjct: 123072 aggggacagcttcacctgat 123053

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>gb|AC102426.6| Mus musculus chromosome 1, clone RP24-88A10, complete sequence
          Length = 192016

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 37     tattttttattaaagaaatagaaa 60
              ||||||||||||||||| ||||||
Sbjct: 171312 tattttttattaaagaagtagaaa 171289

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>emb|AL731549.11| Human DNA sequence from clone RP11-113I9 on chromosome 10 Contains part
             of the gene for alpha-catenin-like protein (MGC26194)
             (VR22), complete sequence
          Length = 81853

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 52    aaatagaaatggcatttttatttc 75
             ||||||||| ||||||||||||||
Sbjct: 66593 aaatagaaagggcatttttatttc 66570

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>emb|AL359980.9| Human DNA sequence from clone RP5-1027O15 on chromosome 11, complete
             sequence
          Length = 83218

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 53    aatagaaatggcatttttatttca 76
             ||||||||||| ||||||||||||
Sbjct: 66232 aatagaaatggtatttttatttca 66209

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>emb|AL160163.24| Human DNA sequence from clone RP5-973N23 on chromosome 6p12.3-21.2
             Contains the TRFP gene for TRF-proximal protein, the BYSL
             gene for bystin-like protein, the CCDN3 gene for cyclin
             D3, the 5' end of USP49 gene for ubiquitin specific
             protease 49 and 3 CpG islands, complete sequence
          Length = 116506

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 40    tttttattaaagaaatagaaatgg 63
             ||||| ||||||||||||||||||
Sbjct: 85353 ttttttttaaagaaatagaaatgg 85330

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>emb|AL591979.1| Listeria monocytogenes strain EGD, complete genome, segment 7/12
          Length = 240050

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 57     gaaatggcatttttatttca 76
              ||||||||||||||||||||
Sbjct: 154752 gaaatggcatttttatttca 154771

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>emb|AL596169.1| Listeria innocua Clip11262 complete genome, segment 7/12
          Length = 239050

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 57    gaaatggcatttttatttca 76
             ||||||||||||||||||||
Sbjct: 18217 gaaatggcatttttatttca 18236

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>gb|AC164311.4| Mus musculus BAC clone RP23-144H18 from chromosome 8, complete sequence
          Length = 190693

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 23    ctgtgatgtgggtctatttt 42
             ||||||||||||||||||||
Sbjct: 26509 ctgtgatgtgggtctatttt 26490

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>gb|AC109607.47| Mus musculus strain C57BL/6J clone rp23-146a22 map 8, complete sequence
          Length = 200759

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 23     ctgtgatgtgggtctatttt 42
              ||||||||||||||||||||
Sbjct: 179935 ctgtgatgtgggtctatttt 179916

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>gb|AC110058.4| Homo sapiens chromosome 11, clone CTD2-3012A18, complete sequence
          Length = 158915

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 53   aatagaaatggcatttttatttca 76
            ||||||||||| ||||||||||||
Sbjct: 6324 aatagaaatggtatttttatttca 6347

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>gb|AC093821.3| Homo sapiens BAC clone RP11-381N20 from 4, complete sequence
          Length = 125151

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 42    tttattaaagaaatagaaat 61
             ||||||||||||||||||||
Sbjct: 55929 tttattaaagaaatagaaat 55910

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>gb|AC068388.7| Homo sapiens chromosome 3, clone RP11-296M9, complete sequence
          Length = 148372

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 53    aatagaaatggcatttttatttca 76
             ||||||||||| ||||||||||||
Sbjct: 10673 aatagaaatggtatttttatttca 10650

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>gb|AC157957.3| Pan troglodytes BAC clone CH251-43B16 from chromosome unknown, complete
              sequence
          Length = 165554

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 42     tttattaaagaaatagaaat 61
              ||||||||||||||||||||
Sbjct: 162565 tttattaaagaaatagaaat 162546

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>ref|NM_063985.2| Caenorhabditis elegans F40F8.1 (F40F8.1) mRNA, complete cds
          Length = 1003

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 230 tttgttggcagcgtcgaaca 249
           ||||||||||||||||||||
Sbjct: 867 tttgttggcagcgtcgaaca 848

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>dbj|AK031291.1| Mus musculus 13 days embryo male testis cDNA, RIKEN full-length
           enriched library, clone:6030402K12 product:hypothetical
           protein, full insert sequence
          Length = 3548

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 258 ggtgggaagacctccatcttgactccca 285
           ||||| ||| ||||||||||||||||||
Sbjct: 162 ggtggcaagtcctccatcttgactccca 189

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>ref|XM_391836.2| PREDICTED: Apis mellifera similar to GA11443-PA (LOC408284), mRNA
          Length = 2183

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 37   tattttttattaaagaaata 56
            ||||||||||||||||||||
Sbjct: 1407 tattttttattaaagaaata 1426

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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 45      attaaagaaatagaaatggcattt 68
               ||||||||||||||||| ||||||
Sbjct: 7277891 attaaagaaatagaaatagcattt 7277914

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>gb|AC021699.5|AC021699 Homo sapiens chromosome 11, clone RP11-277B22, complete sequence
          Length = 163386

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 53     aatagaaatggcatttttatttca 76
              ||||||||||| ||||||||||||
Sbjct: 137437 aatagaaatggtatttttatttca 137414

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>gb|AC161012.4| Pan troglodytes BAC clone CH251-499A2 from chromosome unknown, complete
              sequence
          Length = 205188

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 42     tttattaaagaaatagaaat 61
              ||||||||||||||||||||
Sbjct: 197809 tttattaaagaaatagaaat 197790

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>dbj|AP005756.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBb0035N08
          Length = 136267

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 45    attaaagaaatagaaatggcattt 68
             ||||||||||||||||| ||||||
Sbjct: 53699 attaaagaaatagaaatagcattt 53722

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>gb|AC127465.3| Didelphis virginiana clone LB3-97M17, complete sequence
          Length = 165669

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 37    tattttttattaaagaaata 56
             ||||||||||||||||||||
Sbjct: 28483 tattttttattaaagaaata 28464

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>gb|AC154341.2| Mus musculus BAC clone RP23-240C2 from 16, complete sequence
          Length = 163871

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 119    cacaactggaatccttactgctttttgg 146
              |||||||||||| || ||||||||||||
Sbjct: 115177 cacaactggaattctgactgctttttgg 115204

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>gb|AC101702.11| Mus musculus chromosome 1, clone RP23-247G20, complete sequence
          Length = 178193

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 32     gggtctattttttattaaag 51
              ||||||||||||||||||||
Sbjct: 150960 gggtctattttttattaaag 150979

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>gb|AC133510.3| Mus musculus BAC clone RP23-409B11 from 8, complete sequence
          Length = 195449

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 264   aagacctccatcttgactcc 283
             ||||||||||||||||||||
Sbjct: 46578 aagacctccatcttgactcc 46597

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>gb|AE017262.2| Listeria monocytogenes str. 4b F2365, complete genome
          Length = 2905187

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 57      gaaatggcatttttatttca 76
               ||||||||||||||||||||
Sbjct: 1544460 gaaatggcatttttatttca 1544479

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>gb|AC165222.4| Cavia porcellus, clone Cavia porcellus-25196157D3, complete sequence
          Length = 43983

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 282   cccatcgggctctgcactgc 301
             ||||||||||||||||||||
Sbjct: 30059 cccatcgggctctgcactgc 30078

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>gb|DP000023.1| Didelphis virginiana target 1 genomic scaffold
          Length = 1751794

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 37     tattttttattaaagaaata 56
              ||||||||||||||||||||
Sbjct: 166357 tattttttattaaagaaata 166338

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>emb|AL805952.11| Mouse DNA sequence from clone RP23-125H10 on chromosome 4, complete
              sequence
          Length = 199540

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 44     tattaaagaaatagaaatgg 63
              ||||||||||||||||||||
Sbjct: 106317 tattaaagaaatagaaatgg 106336


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,074,037
Number of Sequences: 3902068
Number of extensions: 4074037
Number of successful extensions: 96921
Number of sequences better than 10.0: 64
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 96652
Number of HSP's gapped (non-prelim): 269
length of query: 372
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 350
effective length of database: 17,147,199,772
effective search space: 6001519920200
effective search space used: 6001519920200
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result