ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl21b03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|BT009089.1| Triticum aestivum clone wkm2c.pk0002.a3:fis, full... 317 1e-83
2gb|AC073133.9| Homo sapiens BAC clone RP11-691F21 from 7, comple... 44 0.22
3dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.22
4dbj|AP004736.2| Oryza sativa (japonica cultivar-group) genomic D... 44 0.22
5dbj|AP004011.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.22
6emb|AL161554.2|ATCHRIV54 Arabidopsis thaliana DNA chromosome 4, ... 42 0.85
7emb|AL031187.1|ATT6K22 Arabidopsis thaliana DNA chromosome 4, BA... 42 0.85
8emb|AL928579.6| Mouse DNA sequence from clone RP23-302M15 on chr... 42 0.85
9gb|AY109428.1| Zea mays CL501_1 mRNA sequence 42 0.85
10gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 3.4
11gb|AC137073.2| Genomic sequence for Oryza sativa, Nipponbare str... 40 3.4
12gb|AC127314.4| Mus musculus BAC clone RP23-217N4 from chromosome... 40 3.4
13gb|AC129179.3| Mus musculus BAC clone RP23-240C24 from chromosom... 40 3.4
14emb|Z70306.1|CEC06G8 Caenorhabditis elegans Cosmid C06G8, comple... 40 3.4
15emb|CR381641.12| Zebrafish DNA sequence from clone DKEY-189N10 i... 40 3.4
16emb|AL078462.9|HSJ159G19 Human DNA sequence from clone RP1-159G1... 40 3.4
17gb|AF517750.1| Mus musculus chromosome 18 NFS107 proviral integr... 40 3.4
18gb|AC068951.18| Oryza sativa chromosome 10 BAC OSJNBa0042E19 gen... 40 3.4
19emb|BX324007.16| Zebrafish DNA sequence from clone CH211-233C16 ... 40 3.4
20gb|AC120670.8| Rattus norvegicus 2 BAC CH230-23N23 (Children's H... 40 3.4
21gb|AC154501.2| Mus musculus BAC clone RP24-87F14 from chromosome... 40 3.4
22gb|AF298202.1| Dictyostelium discoideum putative transposon DDT-... 40 3.4
23tpg|BK001437.1| TPA: TPA_exp: Homo sapiens SULT6B1 (SULT6B1) gen... 40 3.4
24gb|AC017067.4|AC017067 Homo sapiens BAC clone RP11-370B11 from 9... 40 3.4
25dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.4
26dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.4
27gb|AC007899.3| Homo sapiens BAC clone RP11-531C11 from 2, comple... 40 3.4
28dbj|AK071247.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.4
29dbj|AK069084.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.4
30dbj|AK066946.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.4
31emb|BX248238.5| Zebrafish DNA sequence from clone CH211-169J21 i... 40 3.4
32dbj|AK059077.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.4
33emb|BX004808.5| Zebrafish DNA sequence from clone CH211-51B23 in... 40 3.4
34gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 3.4

>gb|BT009089.1| Triticum aestivum clone wkm2c.pk0002.a3:fis, full insert mRNA
           sequence
          Length = 774

 Score =  317 bits (160), Expect = 1e-83
 Identities = 240/265 (90%), Gaps = 5/265 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   acaatttatgcggcacaaaatgtccaggatgagtatccctaga---aaattctgaaacca 57
           |||||||||||||||||||||||||||| ||||||||||||||   ||||||||||||||
Sbjct: 690 acaatttatgcggcacaaaatgtccaggttgagtatccctagaggaaaattctgaaacca 631

                                                                       
Query: 58  agaaactaacagcttaaatacggtaaagtagaagtaacacaataacaacacaatacaatt 117
           |||||||||||| ||||||||||| |  ||  ||| | ||||||||||||||||||||||
Sbjct: 630 agaaactaacagtttaaatacggtgatctaatagttatacaataacaacacaatacaatt 571

                                                                       
Query: 118 cacactaacttccatgaaacagcacag--gtgtatgctcataactgaataattttgacgg 175
           |||||||||||||||| ||||||||    ||||||||||||||| |||||||||||||||
Sbjct: 570 cacactaacttccatggaacagcacgcctgtgtatgctcataaccgaataattttgacgg 511

                                                                       
Query: 176 aatatccatccttaagttacccgtcacttacttgataagagactccatagcttcaaagaa 235
           |||| | ||| | ||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct: 510 aataccgatcttcaagtttcccgtcacttaattgataagagactccatagcttcaaagaa 451

                                    
Query: 236 tagaggcccaaactccctgtttgga 260
           ||||||| |||||||||||||||||
Sbjct: 450 tagaggcacaaactccctgtttgga 426



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>gb|AC073133.9| Homo sapiens BAC clone RP11-691F21 from 7, complete sequence
          Length = 95280

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 152   ctcataactgaataattttgac 173
             ||||||||||||||||||||||
Sbjct: 57533 ctcataactgaataattttgac 57512



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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 18      aaatgtccaggatgagtatccc 39
               ||||||||||||||||||||||
Sbjct: 7266918 aaatgtccaggatgagtatccc 7266897



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>dbj|AP004736.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9,
           BAC clone:OSJNBa0062A09
          Length = 173541

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 18  aaatgtccaggatgagtatccc 39
           ||||||||||||||||||||||
Sbjct: 881 aaatgtccaggatgagtatccc 860



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>dbj|AP004011.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OJ1381_H04
          Length = 130961

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 18     aaatgtccaggatgagtatccc 39
              ||||||||||||||||||||||
Sbjct: 119023 aaatgtccaggatgagtatccc 119002



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>emb|AL161554.2|ATCHRIV54 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 54
          Length = 198715

 Score = 42.1 bits (21), Expect = 0.85
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 99     ataacaacacaatacaattca 119
              |||||||||||||||||||||
Sbjct: 188407 ataacaacacaatacaattca 188427



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>emb|AL031187.1|ATT6K22 Arabidopsis thaliana DNA chromosome 4, BAC clone T6K22 (ESSAII project)
          Length = 89219

 Score = 42.1 bits (21), Expect = 0.85
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 99    ataacaacacaatacaattca 119
             |||||||||||||||||||||
Sbjct: 45130 ataacaacacaatacaattca 45150



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>emb|AL928579.6| Mouse DNA sequence from clone RP23-302M15 on chromosome 4, complete
             sequence
          Length = 184057

 Score = 42.1 bits (21), Expect = 0.85
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 137   cagcacaggtgtatgctcata 157
             |||||||||||||||||||||
Sbjct: 38553 cagcacaggtgtatgctcata 38533



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>gb|AY109428.1| Zea mays CL501_1 mRNA sequence
          Length = 3187

 Score = 42.1 bits (21), Expect = 0.85
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 213 agagactccatagcttcaaagaatagagg 241
           |||| |||||||||||||||||| |||||
Sbjct: 356 agagcctccatagcttcaaagaagagagg 384



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                    
Query: 205      acttgataagagactccatagcttcaaagaatagag 240
                |||||| |||||||||||| ||||| ||||| ||||
Sbjct: 13561552 acttgagaagagactccatggcttcgaagaagagag 13561587



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>gb|AC137073.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBb0005A11, from chromosome 3, complete sequence
          Length = 168219

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                  
Query: 205    acttgataagagactccatagcttcaaagaatagag 240
              |||||| |||||||||||| ||||| ||||| ||||
Sbjct: 121443 acttgagaagagactccatggcttcgaagaagagag 121478



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>gb|AC127314.4| Mus musculus BAC clone RP23-217N4 from chromosome 18, complete sequence
          Length = 232320

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 98     aataacaacacaatacaatt 117
              ||||||||||||||||||||
Sbjct: 151220 aataacaacacaatacaatt 151239



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>gb|AC129179.3| Mus musculus BAC clone RP23-240C24 from chromosome 18, complete sequence
          Length = 208462

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 98     aataacaacacaatacaatt 117
              ||||||||||||||||||||
Sbjct: 196667 aataacaacacaatacaatt 196648



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>emb|Z70306.1|CEC06G8 Caenorhabditis elegans Cosmid C06G8, complete sequence
          Length = 31143

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 45    aattctgaaaccaagaaact 64
             ||||||||||||||||||||
Sbjct: 26630 aattctgaaaccaagaaact 26611



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>emb|CR381641.12| Zebrafish DNA sequence from clone DKEY-189N10 in linkage group 7,
             complete sequence
          Length = 168455

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 86    tagaagtaacacaataacaa 105
             ||||||||||||||||||||
Sbjct: 80485 tagaagtaacacaataacaa 80504



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>emb|AL078462.9|HSJ159G19 Human DNA sequence from clone RP1-159G19 on chromosome 6q14.1-14.3
             Contains the 3' part of a novel gene, complete sequence
          Length = 88509

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 89    aagtaacacaataacaacacaata 112
             |||||||||||||| |||||||||
Sbjct: 22962 aagtaacacaataataacacaata 22939



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>gb|AF517750.1| Mus musculus chromosome 18 NFS107 proviral integration site
          Length = 1655

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 98  aataacaacacaatacaatt 117
           ||||||||||||||||||||
Sbjct: 52  aataacaacacaatacaatt 71



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>gb|AC068951.18| Oryza sativa chromosome 10 BAC OSJNBa0042E19 genomic sequence, complete
              sequence
          Length = 149978

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                  
Query: 205    acttgataagagactccatagcttcaaagaatagag 240
              |||||| |||||||||||| ||||| ||||| ||||
Sbjct: 109697 acttgagaagagactccatggcttcgaagaagagag 109662



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>emb|BX324007.16| Zebrafish DNA sequence from clone CH211-233C16 in linkage group 16,
              complete sequence
          Length = 165294

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 80     gtaaagtagaagtaacacaa 99
              ||||||||||||||||||||
Sbjct: 116674 gtaaagtagaagtaacacaa 116693



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>gb|AC120670.8| Rattus norvegicus 2 BAC CH230-23N23 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 228097

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 39    ctagaaaattctgaaaccaa 58
             ||||||||||||||||||||
Sbjct: 16993 ctagaaaattctgaaaccaa 17012



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>gb|AC154501.2| Mus musculus BAC clone RP24-87F14 from chromosome 14, complete sequence
          Length = 215658

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 96    acaataacaacacaatacaattca 119
             |||||||||||| |||||||||||
Sbjct: 47726 acaataacaacaaaatacaattca 47749



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>gb|AF298202.1| Dictyostelium discoideum putative transposon DDT-B, complete
           sequence
          Length = 5471

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 93  aacacaataacaacacaata 112
           ||||||||||||||||||||
Sbjct: 797 aacacaataacaacacaata 778



 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 93  aacacaataacaacacaata 112
           ||||||||||||||||||||
Sbjct: 752 aacacaataacaacacaata 733



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>tpg|BK001437.1| TPA: TPA_exp: Homo sapiens SULT6B1 (SULT6B1) gene, complete cds;
             alternatively spliced
          Length = 34001

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 149   atgctcataactgaataatt 168
             ||||||||||||||||||||
Sbjct: 22591 atgctcataactgaataatt 22610



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>gb|AC017067.4|AC017067 Homo sapiens BAC clone RP11-370B11 from 9, complete sequence
          Length = 191373

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 43    aaaattctgaaaccaagaaa 62
             ||||||||||||||||||||
Sbjct: 33949 aaaattctgaaaccaagaaa 33968



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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                    
Query: 205      acttgataagagactccatagcttcaaagaatagag 240
                |||||| |||||||||||| ||||| ||||| ||||
Sbjct: 16491598 acttgagaagagactccatggcttcgaagaagagag 16491563



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                    
Query: 205      acttgataagagactccatagcttcaaagaatagag 240
                |||||| |||||||||||| ||||| ||||| ||||
Sbjct: 13557427 acttgagaagagactccatggcttcgaagaagagag 13557462



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>gb|AC007899.3| Homo sapiens BAC clone RP11-531C11 from 2, complete sequence
          Length = 118195

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 149   atgctcataactgaataatt 168
             ||||||||||||||||||||
Sbjct: 13587 atgctcataactgaataatt 13606



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>dbj|AK071247.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023087B10, full
            insert sequence
          Length = 1904

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                
Query: 205  acttgataagagactccatagcttcaaagaatagag 240
            |||||| |||||||||||| ||||| ||||| ||||
Sbjct: 1728 acttgagaagagactccatggcttcgaagaagagag 1693



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>dbj|AK069084.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023007F10, full
            insert sequence
          Length = 1842

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                
Query: 205  acttgataagagactccatagcttcaaagaatagag 240
            |||||| |||||||||||| ||||| ||||| ||||
Sbjct: 1479 acttgagaagagactccatggcttcgaagaagagag 1444



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>dbj|AK066946.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013089G05, full
           insert sequence
          Length = 575

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                               
Query: 205 acttgataagagactccatagcttcaaagaatagag 240
           |||||| |||||||||||| ||||| ||||| ||||
Sbjct: 399 acttgagaagagactccatggcttcgaagaagagag 364



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>emb|BX248238.5| Zebrafish DNA sequence from clone CH211-169J21 in linkage group 20,
              complete sequence
          Length = 158302

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 96     acaataacaacacaatacaa 115
              ||||||||||||||||||||
Sbjct: 126271 acaataacaacacaatacaa 126290



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>dbj|AK059077.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-022-A07, full
           insert sequence
          Length = 834

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                               
Query: 205 acttgataagagactccatagcttcaaagaatagag 240
           |||||| |||||||||||| ||||| ||||| ||||
Sbjct: 546 acttgagaagagactccatggcttcgaagaagagag 511



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>emb|BX004808.5| Zebrafish DNA sequence from clone CH211-51B23 in linkage group 16,
             complete sequence
          Length = 184760

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 80    gtaaagtagaagtaacacaa 99
             ||||||||||||||||||||
Sbjct: 47402 gtaaagtagaagtaacacaa 47383



 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 80    gtaaagtagaagtaacacaa 99
             ||||||||||||||||||||
Sbjct: 46938 gtaaagtagaagtaacacaa 46919



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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                    
Query: 205      acttgataagagactccatagcttcaaagaatagag 240
                |||||| |||||||||||| ||||| ||||| ||||
Sbjct: 16499839 acttgagaagagactccatggcttcgaagaagagag 16499804


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,403,009
Number of Sequences: 3902068
Number of extensions: 2403009
Number of successful extensions: 46907
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 46760
Number of HSP's gapped (non-prelim): 144
length of query: 260
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 238
effective length of database: 17,147,199,772
effective search space: 4081033545736
effective search space used: 4081033545736
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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