Clone Name | rbastl21b03 |
---|---|
Clone Library Name | barley_pub |
>gb|BT009089.1| Triticum aestivum clone wkm2c.pk0002.a3:fis, full insert mRNA sequence Length = 774 Score = 317 bits (160), Expect = 1e-83 Identities = 240/265 (90%), Gaps = 5/265 (1%) Strand = Plus / Minus Query: 1 acaatttatgcggcacaaaatgtccaggatgagtatccctaga---aaattctgaaacca 57 |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| Sbjct: 690 acaatttatgcggcacaaaatgtccaggttgagtatccctagaggaaaattctgaaacca 631 Query: 58 agaaactaacagcttaaatacggtaaagtagaagtaacacaataacaacacaatacaatt 117 |||||||||||| ||||||||||| | || ||| | |||||||||||||||||||||| Sbjct: 630 agaaactaacagtttaaatacggtgatctaatagttatacaataacaacacaatacaatt 571 Query: 118 cacactaacttccatgaaacagcacag--gtgtatgctcataactgaataattttgacgg 175 |||||||||||||||| |||||||| ||||||||||||||| ||||||||||||||| Sbjct: 570 cacactaacttccatggaacagcacgcctgtgtatgctcataaccgaataattttgacgg 511 Query: 176 aatatccatccttaagttacccgtcacttacttgataagagactccatagcttcaaagaa 235 |||| | ||| | ||||| ||||||||||| ||||||||||||||||||||||||||||| Sbjct: 510 aataccgatcttcaagtttcccgtcacttaattgataagagactccatagcttcaaagaa 451 Query: 236 tagaggcccaaactccctgtttgga 260 ||||||| ||||||||||||||||| Sbjct: 450 tagaggcacaaactccctgtttgga 426
>gb|AC073133.9| Homo sapiens BAC clone RP11-691F21 from 7, complete sequence Length = 95280 Score = 44.1 bits (22), Expect = 0.22 Identities = 22/22 (100%) Strand = Plus / Minus Query: 152 ctcataactgaataattttgac 173 |||||||||||||||||||||| Sbjct: 57533 ctcataactgaataattttgac 57512
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 44.1 bits (22), Expect = 0.22 Identities = 22/22 (100%) Strand = Plus / Minus Query: 18 aaatgtccaggatgagtatccc 39 |||||||||||||||||||||| Sbjct: 7266918 aaatgtccaggatgagtatccc 7266897
>dbj|AP004736.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0062A09 Length = 173541 Score = 44.1 bits (22), Expect = 0.22 Identities = 22/22 (100%) Strand = Plus / Minus Query: 18 aaatgtccaggatgagtatccc 39 |||||||||||||||||||||| Sbjct: 881 aaatgtccaggatgagtatccc 860
>dbj|AP004011.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1381_H04 Length = 130961 Score = 44.1 bits (22), Expect = 0.22 Identities = 22/22 (100%) Strand = Plus / Minus Query: 18 aaatgtccaggatgagtatccc 39 |||||||||||||||||||||| Sbjct: 119023 aaatgtccaggatgagtatccc 119002
>emb|AL161554.2|ATCHRIV54 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 54 Length = 198715 Score = 42.1 bits (21), Expect = 0.85 Identities = 21/21 (100%) Strand = Plus / Plus Query: 99 ataacaacacaatacaattca 119 ||||||||||||||||||||| Sbjct: 188407 ataacaacacaatacaattca 188427
>emb|AL031187.1|ATT6K22 Arabidopsis thaliana DNA chromosome 4, BAC clone T6K22 (ESSAII project) Length = 89219 Score = 42.1 bits (21), Expect = 0.85 Identities = 21/21 (100%) Strand = Plus / Plus Query: 99 ataacaacacaatacaattca 119 ||||||||||||||||||||| Sbjct: 45130 ataacaacacaatacaattca 45150
>emb|AL928579.6| Mouse DNA sequence from clone RP23-302M15 on chromosome 4, complete sequence Length = 184057 Score = 42.1 bits (21), Expect = 0.85 Identities = 21/21 (100%) Strand = Plus / Minus Query: 137 cagcacaggtgtatgctcata 157 ||||||||||||||||||||| Sbjct: 38553 cagcacaggtgtatgctcata 38533
>gb|AY109428.1| Zea mays CL501_1 mRNA sequence Length = 3187 Score = 42.1 bits (21), Expect = 0.85 Identities = 27/29 (93%) Strand = Plus / Plus Query: 213 agagactccatagcttcaaagaatagagg 241 |||| |||||||||||||||||| ||||| Sbjct: 356 agagcctccatagcttcaaagaagagagg 384
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 3.4 Identities = 32/36 (88%) Strand = Plus / Plus Query: 205 acttgataagagactccatagcttcaaagaatagag 240 |||||| |||||||||||| ||||| ||||| |||| Sbjct: 13561552 acttgagaagagactccatggcttcgaagaagagag 13561587
>gb|AC137073.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0005A11, from chromosome 3, complete sequence Length = 168219 Score = 40.1 bits (20), Expect = 3.4 Identities = 32/36 (88%) Strand = Plus / Plus Query: 205 acttgataagagactccatagcttcaaagaatagag 240 |||||| |||||||||||| ||||| ||||| |||| Sbjct: 121443 acttgagaagagactccatggcttcgaagaagagag 121478
>gb|AC127314.4| Mus musculus BAC clone RP23-217N4 from chromosome 18, complete sequence Length = 232320 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 98 aataacaacacaatacaatt 117 |||||||||||||||||||| Sbjct: 151220 aataacaacacaatacaatt 151239
>gb|AC129179.3| Mus musculus BAC clone RP23-240C24 from chromosome 18, complete sequence Length = 208462 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 98 aataacaacacaatacaatt 117 |||||||||||||||||||| Sbjct: 196667 aataacaacacaatacaatt 196648
>emb|Z70306.1|CEC06G8 Caenorhabditis elegans Cosmid C06G8, complete sequence Length = 31143 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 aattctgaaaccaagaaact 64 |||||||||||||||||||| Sbjct: 26630 aattctgaaaccaagaaact 26611
>emb|CR381641.12| Zebrafish DNA sequence from clone DKEY-189N10 in linkage group 7, complete sequence Length = 168455 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 86 tagaagtaacacaataacaa 105 |||||||||||||||||||| Sbjct: 80485 tagaagtaacacaataacaa 80504
>emb|AL078462.9|HSJ159G19 Human DNA sequence from clone RP1-159G19 on chromosome 6q14.1-14.3 Contains the 3' part of a novel gene, complete sequence Length = 88509 Score = 40.1 bits (20), Expect = 3.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 89 aagtaacacaataacaacacaata 112 |||||||||||||| ||||||||| Sbjct: 22962 aagtaacacaataataacacaata 22939
>gb|AF517750.1| Mus musculus chromosome 18 NFS107 proviral integration site Length = 1655 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 98 aataacaacacaatacaatt 117 |||||||||||||||||||| Sbjct: 52 aataacaacacaatacaatt 71
>gb|AC068951.18| Oryza sativa chromosome 10 BAC OSJNBa0042E19 genomic sequence, complete sequence Length = 149978 Score = 40.1 bits (20), Expect = 3.4 Identities = 32/36 (88%) Strand = Plus / Minus Query: 205 acttgataagagactccatagcttcaaagaatagag 240 |||||| |||||||||||| ||||| ||||| |||| Sbjct: 109697 acttgagaagagactccatggcttcgaagaagagag 109662
>emb|BX324007.16| Zebrafish DNA sequence from clone CH211-233C16 in linkage group 16, complete sequence Length = 165294 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 80 gtaaagtagaagtaacacaa 99 |||||||||||||||||||| Sbjct: 116674 gtaaagtagaagtaacacaa 116693
>gb|AC120670.8| Rattus norvegicus 2 BAC CH230-23N23 (Children's Hospital Oakland Research Institute) complete sequence Length = 228097 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 39 ctagaaaattctgaaaccaa 58 |||||||||||||||||||| Sbjct: 16993 ctagaaaattctgaaaccaa 17012
>gb|AC154501.2| Mus musculus BAC clone RP24-87F14 from chromosome 14, complete sequence Length = 215658 Score = 40.1 bits (20), Expect = 3.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 96 acaataacaacacaatacaattca 119 |||||||||||| ||||||||||| Sbjct: 47726 acaataacaacaaaatacaattca 47749
>gb|AF298202.1| Dictyostelium discoideum putative transposon DDT-B, complete sequence Length = 5471 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 93 aacacaataacaacacaata 112 |||||||||||||||||||| Sbjct: 797 aacacaataacaacacaata 778 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 93 aacacaataacaacacaata 112 |||||||||||||||||||| Sbjct: 752 aacacaataacaacacaata 733
>tpg|BK001437.1| TPA: TPA_exp: Homo sapiens SULT6B1 (SULT6B1) gene, complete cds; alternatively spliced Length = 34001 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 149 atgctcataactgaataatt 168 |||||||||||||||||||| Sbjct: 22591 atgctcataactgaataatt 22610
>gb|AC017067.4|AC017067 Homo sapiens BAC clone RP11-370B11 from 9, complete sequence Length = 191373 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 43 aaaattctgaaaccaagaaa 62 |||||||||||||||||||| Sbjct: 33949 aaaattctgaaaccaagaaa 33968
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 3.4 Identities = 32/36 (88%) Strand = Plus / Minus Query: 205 acttgataagagactccatagcttcaaagaatagag 240 |||||| |||||||||||| ||||| ||||| |||| Sbjct: 16491598 acttgagaagagactccatggcttcgaagaagagag 16491563
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 3.4 Identities = 32/36 (88%) Strand = Plus / Plus Query: 205 acttgataagagactccatagcttcaaagaatagag 240 |||||| |||||||||||| ||||| ||||| |||| Sbjct: 13557427 acttgagaagagactccatggcttcgaagaagagag 13557462
>gb|AC007899.3| Homo sapiens BAC clone RP11-531C11 from 2, complete sequence Length = 118195 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 149 atgctcataactgaataatt 168 |||||||||||||||||||| Sbjct: 13587 atgctcataactgaataatt 13606
>dbj|AK071247.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023087B10, full insert sequence Length = 1904 Score = 40.1 bits (20), Expect = 3.4 Identities = 32/36 (88%) Strand = Plus / Minus Query: 205 acttgataagagactccatagcttcaaagaatagag 240 |||||| |||||||||||| ||||| ||||| |||| Sbjct: 1728 acttgagaagagactccatggcttcgaagaagagag 1693
>dbj|AK069084.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023007F10, full insert sequence Length = 1842 Score = 40.1 bits (20), Expect = 3.4 Identities = 32/36 (88%) Strand = Plus / Minus Query: 205 acttgataagagactccatagcttcaaagaatagag 240 |||||| |||||||||||| ||||| ||||| |||| Sbjct: 1479 acttgagaagagactccatggcttcgaagaagagag 1444
>dbj|AK066946.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013089G05, full insert sequence Length = 575 Score = 40.1 bits (20), Expect = 3.4 Identities = 32/36 (88%) Strand = Plus / Minus Query: 205 acttgataagagactccatagcttcaaagaatagag 240 |||||| |||||||||||| ||||| ||||| |||| Sbjct: 399 acttgagaagagactccatggcttcgaagaagagag 364
>emb|BX248238.5| Zebrafish DNA sequence from clone CH211-169J21 in linkage group 20, complete sequence Length = 158302 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 96 acaataacaacacaatacaa 115 |||||||||||||||||||| Sbjct: 126271 acaataacaacacaatacaa 126290
>dbj|AK059077.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-022-A07, full insert sequence Length = 834 Score = 40.1 bits (20), Expect = 3.4 Identities = 32/36 (88%) Strand = Plus / Minus Query: 205 acttgataagagactccatagcttcaaagaatagag 240 |||||| |||||||||||| ||||| ||||| |||| Sbjct: 546 acttgagaagagactccatggcttcgaagaagagag 511
>emb|BX004808.5| Zebrafish DNA sequence from clone CH211-51B23 in linkage group 16, complete sequence Length = 184760 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 80 gtaaagtagaagtaacacaa 99 |||||||||||||||||||| Sbjct: 47402 gtaaagtagaagtaacacaa 47383 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 80 gtaaagtagaagtaacacaa 99 |||||||||||||||||||| Sbjct: 46938 gtaaagtagaagtaacacaa 46919
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 3.4 Identities = 32/36 (88%) Strand = Plus / Minus Query: 205 acttgataagagactccatagcttcaaagaatagag 240 |||||| |||||||||||| ||||| ||||| |||| Sbjct: 16499839 acttgagaagagactccatggcttcgaagaagagag 16499804 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,403,009 Number of Sequences: 3902068 Number of extensions: 2403009 Number of successful extensions: 46907 Number of sequences better than 10.0: 34 Number of HSP's better than 10.0 without gapping: 34 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 46760 Number of HSP's gapped (non-prelim): 144 length of query: 260 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 238 effective length of database: 17,147,199,772 effective search space: 4081033545736 effective search space used: 4081033545736 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)