>SETX_HUMAN (Q7Z333) Probable helicase senataxin (EC 3.6.1.-) (SEN1 homolog)|
          Length = 2677

 Score = 31.2 bits (69), Expect = 0.70
 Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 14/82 (17%)
 Frame = +3

Query: 18  LQLPLLEMLKQYMLTLKEKEKERCRQRV----SGYCSIGVYRKLP----------NMAHN 155
           L++PLLE+LK   L L E+  E C + +       CS  V+ K P           M   
Sbjct: 110 LRVPLLEILKYPYLLLHERVNELCVEALCRMEQANCSFQVFDKHPGIYLFLVHPNEMVRR 169

Query: 156 WVNVSLRLENITSQVDKFSLQE 221
           W  ++ R      + D + LQE
Sbjct: 170 WAILTARNLGKVDRDDYYDLQE 191

>YN25_YEAST (P53831) Hypothetical 14.1 kDa protein in SEC21-MRPL10 intergenic|
           region
          Length = 123

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +3

Query: 159 VNVSLRLENITSQVDKFSLQENKKVQTQLVKRNENSFLSRPSTG 290
           +NV + LEN ++ + KF   EN+     L   ++N + +RP  G
Sbjct: 7   INVDIILENASNAIKKFERYENRTRVPTLEGWDDNHYTNRPCVG 50

>GYRB_BUCAP (P29435) DNA gyrase subunit B (EC 5.99.1.3)|
          Length = 803

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 17/56 (30%), Positives = 27/56 (48%)
 Frame = +3

Query: 132 KLPNMAHNWVNVSLRLENITSQVDKFSLQENKKVQTQLVKRNENSFLSRPSTGCSR 299
           K  N+  NW+      E +  +++K    +N  + T  +KRNEN  +  PS   SR
Sbjct: 620 KNENVVQNWI------EKLVEKLNK--KDKNNTIYTSKIKRNENDSIFEPSIKLSR 667

>BACH2_MOUSE (P97303) Transcription regulator protein BACH2 (BTB and CNC homolog|
           2)
          Length = 716

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +3

Query: 171 LRLENITSQVDKFSLQENKKVQTQLVKRNENSFLSRPSTGCSRP 302
           LR+ N+      F       +QTQL+ R +  F+ R  + C RP
Sbjct: 116 LRMHNLEDSCFSF-------LQTQLLNREDGLFVCRKDSACQRP 152


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,301,788
Number of Sequences: 219361
Number of extensions: 723530
Number of successful extensions: 1796
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1796
length of database: 80,573,946
effective HSP length: 76
effective length of database: 63,902,510
effective search space used: 1533660240
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)