ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl21b02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 123 3e-25
2dbj|AP003920.3| Oryza sativa (japonica cultivar-group) genomic D... 123 3e-25
3dbj|AK120362.1| Oryza sativa (japonica cultivar-group) cDNA clon... 123 3e-25
4ref|XM_483480.1| Oryza sativa (japonica cultivar-group), mRNA 100 5e-18
5dbj|AK067790.1| Oryza sativa (japonica cultivar-group) cDNA clon... 100 5e-18
6emb|AL355275.8| Human DNA sequence from clone RP11-416N18 on chr... 44 0.25
7gb|AC104662.3| Homo sapiens BAC clone RP11-660M5 from 4, complet... 44 0.25
8gb|AF188029.5| Homo sapiens chromosome 8 clone GS1-56L10 map p22... 44 0.25
9gb|AC135352.6| Homo sapiens chromosome 8, clone RP11-369K16, com... 44 0.25
10gb|DQ483629.1| Gymnogyps californianus clone 52F microsatellite ... 42 1.0
11gb|DQ483539.1| Gymnogyps californianus clone 98D microsatellite ... 42 1.0
12gb|DQ484029.1| Gymnogyps californianus clone 195G microsatellite... 42 1.0
13gb|DQ483403.1| Gymnogyps californianus clone 106H microsatellite... 42 1.0
14emb|CT025560.9| Mouse DNA sequence from clone RP23-432N22 on chr... 42 1.0
15emb|BX005314.35| Zebrafish DNA sequence from clone CH211-155D24 ... 42 1.0
16gb|AC072063.5| Homo sapiens BAC clone RP11-697B15 from 7, comple... 42 1.0
17gb|AC008226.10|AC008226 Drosophila melanogaster, chromosome 3R, ... 42 1.0
18gb|AC080018.14|AC080018 Mus musculus 3 BAC RP23-200E11 (Roswell ... 42 1.0
19gb|AC009019.10| Homo sapiens chromosome 16 clone RP11-101E7, com... 42 1.0
20gb|AC009034.10| Homo sapiens chromosome 16 clone RP11-141O15, co... 42 1.0
21emb|AL671962.5| Mouse DNA sequence from clone RP23-163A2 on chro... 42 1.0
22gb|AE003672.4| Drosophila melanogaster chromosome 3R, section 12... 42 1.0
23dbj|AP001107.5| Homo sapiens genomic DNA, chromosome 11q clone:R... 42 1.0
24gb|AC154414.2| Mus musculus BAC clone RP24-231D24 from 16, compl... 42 1.0
25emb|AL606832.4| Mouse DNA sequence from clone RP23-346G22 on chr... 42 1.0
26gb|AC155166.4| Mus musculus BAC clone RP24-69M8 from chromosome ... 40 4.0
27gb|AY822042.1| Bacillus thuringiensis serovar darmstadiensis pla... 40 4.0
28gb|DQ214013.1| Taeniopygia guttata clone 0061P0004C09 cytochrome... 40 4.0
29gb|AC116370.17| Mus musculus chromosome 3, clone RP24-113D8, com... 40 4.0
30gb|AF309463.1| Sciurus vulgaris clone Scv19 microsatellite sequence 40 4.0
31ref|XM_361878.1| Magnaporthe grisea 70-15 hypothetical protein (... 40 4.0
32gb|AC067970.4| Mus musculus strain C57BL6/J chromosome 6 clone R... 40 4.0
33gb|BC072060.1| Xenopus laevis cDNA clone MGC:78934 IMAGE:4203106... 40 4.0
34gb|BC041298.1| Xenopus laevis similar to POU domain, class 3, tr... 40 4.0
35emb|X96423.1|XLPOU3B X.laevis POU3b gene 40 4.0
36gb|AC124423.3| Mus musculus BAC clone RP24-328B20 from chromosom... 40 4.0
37gb|AC114918.4| Mus musculus BAC clone RP23-86N20 from 5, complet... 40 4.0
38gb|U48803.1|RNU48803 Rattus norvegicus rod photoreceptor cyclic ... 40 4.0
39gb|AC004981.2| Homo sapiens PAC clone RP5-1159C10 from 7, comple... 40 4.0
40ref|NM_053497.1| Rattus norvegicus cyclic nucleotide gated chann... 40 4.0
41emb|X64835.1|XLPOU3 X.laevis XlPOU3 mRNA for a POU-domain protein 40 4.0
42gb|AC163100.4| Mus musculus chromosome 15, clone RP23-404G8, com... 40 4.0
43gb|AF334830.1| Homo sapiens cartilage-hair hypoplasia region gen... 40 4.0
44dbj|AP007157.1| Aspergillus oryzae RIB40 genomic DNA, SC023 40 4.0
45gb|AC002332.3| Arabidopsis thaliana chromosome 2 clone F4P9 map ... 40 4.0
46gb|AC104211.3| Homo sapiens chromosome 8, clone RP11-100L22, com... 40 4.0
47gb|AC008628.6| Homo sapiens chromosome 5 clone CTB-161J7, comple... 40 4.0
48dbj|AK041161.1| Mus musculus adult male aorta and vein cDNA, RIK... 40 4.0
49gb|AC022193.5|AC022193 Homo sapiens, clone RP11-23B3, complete s... 40 4.0
50gb|DP000026.1| Pongo pygmaeus target 1 genomic scaffold 40 4.0
51ref|NM_007723.1| Mus musculus cyclic nucleotide gated channel al... 40 4.0
52gb|AC122733.11| Mus musculus chromosome 5, clone RP24-506B15, co... 40 4.0
53gb|AC099698.14| Mus musculus chromosome 5, clone RP23-415O9, com... 40 4.0
54gb|AF466202.2| Zea mays putative pol protein gene, partial cds; ... 40 4.0
55gb|AC118234.10| Mus musculus chromosome 15, clone RP23-463J9, co... 40 4.0
56gb|U93851.1|RNU93851 Rattus norvegicus rod-type cyclic nucleotid... 40 4.0
57emb|AL837518.17| Mouse DNA sequence from clone RP23-312M16 on ch... 40 4.0
58emb|AL133410.32| Human DNA sequence from clone RP11-112J3 on chr... 40 4.0
59gb|AC005138.1|AC005138 Homo sapiens chromosome 17, clone hRPK.26... 40 4.0
60gb|AC135511.4| Mus musculus BAC clone RP23-255B19 from 3, comple... 40 4.0
61emb|AL117187.7|CNS01DRD Human chromosome 14 DNA sequence BAC R-7... 40 4.0
62gb|U19717.1|MMU19717 Mus musculus cGMP-gated cation channel mRNA... 40 4.0
63emb|AL671880.15| Mouse DNA sequence from clone RP23-384C22 on ch... 40 4.0
64gb|M84742.1|MUSCNCG Mus musculus cGMP-gated cation channel prote... 40 4.0
65emb|AL583890.13| Mouse DNA sequence from clone RP23-212F17 on ch... 40 4.0 
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score =  123 bits (62), Expect = 3e-25
 Identities = 89/98 (90%)
 Strand = Plus / Plus

                                                                            
Query: 206      attctctttacaggagaataaaaaggtacagactcaacttgtaaagaggaatgaaaattc 265
                ||||||||||||||||||||||||||||||||||||||||| || |||| |||| |||||
Sbjct: 26445094 attctctttacaggagaataaaaaggtacagactcaacttgcaaggaggcatgagaattc 26445153

                                                      
Query: 266      atttttatcaaggcccagcacaggctgcagtcgtccat 303
                |||| ||| ||| |||| |||| |||||||||||||||
Sbjct: 26445154 atttatattaagacccaacacaagctgcagtcgtccat 26445191



 Score = 75.8 bits (38), Expect = 7e-11
 Identities = 56/62 (90%)
 Strand = Plus / Plus

                                                                            
Query: 16       ttttgcagcttccccttttggaaatgctgaaacagtacatgttaacactgaaggaaaagg 75
                |||||||||||||||| ||||  ||||||||| | |||||| ||||||||||||||||||
Sbjct: 26444944 ttttgcagcttcccctattggccatgctgaaagactacatgctaacactgaaggaaaagg 26445003

                  
Query: 76       aa 77
                ||
Sbjct: 26445004 aa 26445005
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>dbj|AP003920.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1789_C07
          Length = 138944

 Score =  123 bits (62), Expect = 3e-25
 Identities = 89/98 (90%)
 Strand = Plus / Plus

                                                                         
Query: 206   attctctttacaggagaataaaaaggtacagactcaacttgtaaagaggaatgaaaattc 265
             ||||||||||||||||||||||||||||||||||||||||| || |||| |||| |||||
Sbjct: 94646 attctctttacaggagaataaaaaggtacagactcaacttgcaaggaggcatgagaattc 94705

                                                   
Query: 266   atttttatcaaggcccagcacaggctgcagtcgtccat 303
             |||| ||| ||| |||| |||| |||||||||||||||
Sbjct: 94706 atttatattaagacccaacacaagctgcagtcgtccat 94743



 Score = 75.8 bits (38), Expect = 7e-11
 Identities = 56/62 (90%)
 Strand = Plus / Plus

                                                                         
Query: 16    ttttgcagcttccccttttggaaatgctgaaacagtacatgttaacactgaaggaaaagg 75
             |||||||||||||||| ||||  ||||||||| | |||||| ||||||||||||||||||
Sbjct: 94496 ttttgcagcttcccctattggccatgctgaaagactacatgctaacactgaaggaaaagg 94555

               
Query: 76    aa 77
             ||
Sbjct: 94556 aa 94557
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>dbj|AK120362.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013067O11, full
            insert sequence
          Length = 3156

 Score =  123 bits (62), Expect = 3e-25
 Identities = 89/98 (90%)
 Strand = Plus / Minus

                                                                        
Query: 206  attctctttacaggagaataaaaaggtacagactcaacttgtaaagaggaatgaaaattc 265
            ||||||||||||||||||||||||||||||||||||||||| || |||| |||| |||||
Sbjct: 2951 attctctttacaggagaataaaaaggtacagactcaacttgcaaggaggcatgagaattc 2892

                                                  
Query: 266  atttttatcaaggcccagcacaggctgcagtcgtccat 303
            |||| ||| ||| |||| |||| |||||||||||||||
Sbjct: 2891 atttatattaagacccaacacaagctgcagtcgtccat 2854



 Score = 75.8 bits (38), Expect = 7e-11
 Identities = 56/62 (90%)
 Strand = Plus / Minus

                                                                        
Query: 16   ttttgcagcttccccttttggaaatgctgaaacagtacatgttaacactgaaggaaaagg 75
            |||||||||||||||| ||||  ||||||||| | |||||| ||||||||||||||||||
Sbjct: 3101 ttttgcagcttcccctattggccatgctgaaagactacatgctaacactgaaggaaaagg 3042

              
Query: 76   aa 77
            ||
Sbjct: 3041 aa 3040
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>ref|XM_483480.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2194

 Score = 99.6 bits (50), Expect = 5e-18
 Identities = 77/86 (89%)
 Strand = Plus / Plus

                                                                        
Query: 218  ggagaataaaaaggtacagactcaacttgtaaagaggaatgaaaattcatttttatcaag 277
            ||||||||||||||||||||||||||||| || |||| |||| ||||||||| ||| |||
Sbjct: 1581 ggagaataaaaaggtacagactcaacttgcaaggaggcatgagaattcatttatattaag 1640

                                      
Query: 278  gcccagcacaggctgcagtcgtccat 303
             |||| |||| |||||||||||||||
Sbjct: 1641 acccaacacaagctgcagtcgtccat 1666



 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 50/56 (89%)
 Strand = Plus / Plus

                                                                    
Query: 22   agcttccccttttggaaatgctgaaacagtacatgttaacactgaaggaaaaggaa 77
            |||||||||| ||||  ||||||||| | |||||| ||||||||||||||||||||
Sbjct: 1505 agcttcccctattggccatgctgaaagactacatgctaacactgaaggaaaaggaa 1560
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>dbj|AK067790.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013119G06, full
            insert sequence
          Length = 2193

 Score = 99.6 bits (50), Expect = 5e-18
 Identities = 77/86 (89%)
 Strand = Plus / Plus

                                                                        
Query: 218  ggagaataaaaaggtacagactcaacttgtaaagaggaatgaaaattcatttttatcaag 277
            ||||||||||||||||||||||||||||| || |||| |||| ||||||||| ||| |||
Sbjct: 1581 ggagaataaaaaggtacagactcaacttgcaaggaggcatgagaattcatttatattaag 1640

                                      
Query: 278  gcccagcacaggctgcagtcgtccat 303
             |||| |||| |||||||||||||||
Sbjct: 1641 acccaacacaagctgcagtcgtccat 1666



 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 50/56 (89%)
 Strand = Plus / Plus

                                                                    
Query: 22   agcttccccttttggaaatgctgaaacagtacatgttaacactgaaggaaaaggaa 77
            |||||||||| ||||  ||||||||| | |||||| ||||||||||||||||||||
Sbjct: 1505 agcttcccctattggccatgctgaaagactacatgctaacactgaaggaaaaggaa 1560
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>emb|AL355275.8| Human DNA sequence from clone RP11-416N18 on chromosome 10 Contains
             part of a novel gene, complete sequence
          Length = 94410

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 67    aggaaaaggaaaaagagagatg 88
             ||||||||||||||||||||||
Sbjct: 51122 aggaaaaggaaaaagagagatg 51101
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>gb|AC104662.3| Homo sapiens BAC clone RP11-660M5 from 4, complete sequence
          Length = 122457

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 60    acactgaaggaaaaggaaaaag 81
             ||||||||||||||||||||||
Sbjct: 18281 acactgaaggaaaaggaaaaag 18260
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>gb|AF188029.5| Homo sapiens chromosome 8 clone GS1-56L10 map p22-p21, complete
             sequence
          Length = 106784

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 14    atttttgcagcttccccttttg 35
             ||||||||||||||||||||||
Sbjct: 67121 atttttgcagcttccccttttg 67100
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>gb|AC135352.6| Homo sapiens chromosome 8, clone RP11-369K16, complete sequence
          Length = 133950

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 14    atttttgcagcttccccttttg 35
             ||||||||||||||||||||||
Sbjct: 28358 atttttgcagcttccccttttg 28337
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>gb|DQ483629.1| Gymnogyps californianus clone 52F microsatellite sequence
          Length = 652

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 65  gaaggaaaaggaaaaagagag 85
           |||||||||||||||||||||
Sbjct: 256 gaaggaaaaggaaaaagagag 276
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>gb|DQ483539.1| Gymnogyps californianus clone 98D microsatellite sequence
          Length = 639

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 65  gaaggaaaaggaaaaagagag 85
           |||||||||||||||||||||
Sbjct: 256 gaaggaaaaggaaaaagagag 276
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>gb|DQ484029.1| Gymnogyps californianus clone 195G microsatellite sequence
          Length = 1251

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 65  gaaggaaaaggaaaaagagag 85
           |||||||||||||||||||||
Sbjct: 868 gaaggaaaaggaaaaagagag 888
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>gb|DQ483403.1| Gymnogyps californianus clone 106H microsatellite sequence
          Length = 639

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 65  gaaggaaaaggaaaaagagag 85
           |||||||||||||||||||||
Sbjct: 384 gaaggaaaaggaaaaagagag 364
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>emb|CT025560.9| Mouse DNA sequence from clone RP23-432N22 on chromosome 16, complete
              sequence
          Length = 212903

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 256    atgaaaattcatttttatcaa 276
              |||||||||||||||||||||
Sbjct: 127542 atgaaaattcatttttatcaa 127562
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>emb|BX005314.35| Zebrafish DNA sequence from clone CH211-155D24 in linkage group 6,
              complete sequence
          Length = 164188

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 58     taacactgaaggaaaaggaaa 78
              |||||||||||||||||||||
Sbjct: 155235 taacactgaaggaaaaggaaa 155255
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>gb|AC072063.5| Homo sapiens BAC clone RP11-697B15 from 7, complete sequence
          Length = 136286

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 59     aacactgaaggaaaaggaaaaagag 83
              |||||||||||||||| ||||||||
Sbjct: 112765 aacactgaaggaaaagaaaaaagag 112741
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>gb|AC008226.10|AC008226 Drosophila melanogaster, chromosome 3R, region 84D-84D, BAC clone
             BACR02B19, complete sequence
          Length = 171286

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 245   tgtaaagaggaatgaaaattcattt 269
             |||||| ||||||||||||||||||
Sbjct: 73487 tgtaaataggaatgaaaattcattt 73463
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>gb|AC080018.14|AC080018 Mus musculus 3 BAC RP23-200E11 (Roswell Park Cancer Institute Mouse BAC
             Library) complete sequence
          Length = 209643

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 66    aaggaaaaggaaaaagagaga 86
             |||||||||||||||||||||
Sbjct: 70548 aaggaaaaggaaaaagagaga 70568
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>gb|AC009019.10| Homo sapiens chromosome 16 clone RP11-101E7, complete sequence
          Length = 179785

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 66     aaggaaaaggaaaaagagaga 86
              |||||||||||||||||||||
Sbjct: 159856 aaggaaaaggaaaaagagaga 159876
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>gb|AC009034.10| Homo sapiens chromosome 16 clone RP11-141O15, complete sequence
          Length = 166419

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 66    aaggaaaaggaaaaagagaga 86
             |||||||||||||||||||||
Sbjct: 41457 aaggaaaaggaaaaagagaga 41477
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>emb|AL671962.5| Mouse DNA sequence from clone RP23-163A2 on chromosome X, complete
             sequence
          Length = 199534

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 58    taacactgaaggaaaaggaaa 78
             |||||||||||||||||||||
Sbjct: 19413 taacactgaaggaaaaggaaa 19393
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>gb|AE003672.4| Drosophila melanogaster chromosome 3R, section 12 of 118 of the complete
              sequence
          Length = 301379

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 245    tgtaaagaggaatgaaaattcattt 269
              |||||| ||||||||||||||||||
Sbjct: 271267 tgtaaataggaatgaaaattcattt 271243
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>dbj|AP001107.5| Homo sapiens genomic DNA, chromosome 11q clone:RP11-867G23, complete
              sequences
          Length = 196662

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 66     aaggaaaaggaaaaagagaga 86
              |||||||||||||||||||||
Sbjct: 146652 aaggaaaaggaaaaagagaga 146672
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>gb|AC154414.2| Mus musculus BAC clone RP24-231D24 from 16, complete sequence
          Length = 157232

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 256   atgaaaattcatttttatcaa 276
             |||||||||||||||||||||
Sbjct: 82428 atgaaaattcatttttatcaa 82408
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>emb|AL606832.4| Mouse DNA sequence from clone RP23-346G22 on chromosome 3, complete
              sequence
          Length = 157428

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 66     aaggaaaaggaaaaagagaga 86
              |||||||||||||||||||||
Sbjct: 124349 aaggaaaaggaaaaagagaga 124329
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>gb|AC155166.4| Mus musculus BAC clone RP24-69M8 from chromosome 8, complete sequence
          Length = 212711

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 71     aaaggaaaaagagagatgca 90
              ||||||||||||||||||||
Sbjct: 186001 aaaggaaaaagagagatgca 185982
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>gb|AY822042.1| Bacillus thuringiensis serovar darmstadiensis plasmid pBMBt1,
            complete sequence
          Length = 6700

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 219  gagaataaaaaggtacagac 238
            ||||||||||||||||||||
Sbjct: 2416 gagaataaaaaggtacagac 2435
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>gb|DQ214013.1| Taeniopygia guttata clone 0061P0004C09 cytochrome b5 outer
           mitochondrial membrane precursor variant 1-like mRNA,
           complete sequence
          Length = 1067

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 34  tggaaatgctgaaacagtac 53
           ||||||||||||||||||||
Sbjct: 277 tggaaatgctgaaacagtac 296
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>gb|AC116370.17| Mus musculus chromosome 3, clone RP24-113D8, complete sequence
          Length = 155613

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 65     gaaggaaaaggaaaaagaga 84
              ||||||||||||||||||||
Sbjct: 139262 gaaggaaaaggaaaaagaga 139281
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>gb|AF309463.1| Sciurus vulgaris clone Scv19 microsatellite sequence
          Length = 431

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 27  ccccttttggaaatgctgaa 46
           ||||||||||||||||||||
Sbjct: 390 ccccttttggaaatgctgaa 409
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>ref|XM_361878.1| Magnaporthe grisea 70-15 hypothetical protein (MG10955.4) partial
            mRNA
          Length = 2718

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 66   aaggaaaaggaaaaagagag 85
            ||||||||||||||||||||
Sbjct: 2428 aaggaaaaggaaaaagagag 2447
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>gb|AC067970.4| Mus musculus strain C57BL6/J chromosome 6 clone RP23-13M22, complete
             sequence
          Length = 151530

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 67    aggaaaaggaaaaagagaga 86
             ||||||||||||||||||||
Sbjct: 85808 aggaaaaggaaaaagagaga 85789
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>gb|BC072060.1| Xenopus laevis cDNA clone MGC:78934 IMAGE:4203106, complete cds
          Length = 2284

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 65   gaaggaaaaggaaaaagaga 84
            ||||||||||||||||||||
Sbjct: 1195 gaaggaaaaggaaaaagaga 1214
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>gb|BC041298.1| Xenopus laevis similar to POU domain, class 3, transcription factor
           2, mRNA (cDNA clone IMAGE:4683624), partial cds
          Length = 2526

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 65  gaaggaaaaggaaaaagaga 84
           ||||||||||||||||||||
Sbjct: 944 gaaggaaaaggaaaaagaga 963
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>emb|X96423.1|XLPOU3B X.laevis POU3b gene
          Length = 4122

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 65   gaaggaaaaggaaaaagaga 84
            ||||||||||||||||||||
Sbjct: 1932 gaaggaaaaggaaaaagaga 1951
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>gb|AC124423.3| Mus musculus BAC clone RP24-328B20 from chromosome 8, complete sequence
          Length = 171403

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 71     aaaggaaaaagagagatgca 90
              ||||||||||||||||||||
Sbjct: 123330 aaaggaaaaagagagatgca 123349
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>gb|AC114918.4| Mus musculus BAC clone RP23-86N20 from 5, complete sequence
          Length = 165767

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 65    gaaggaaaaggaaaaagaga 84
             ||||||||||||||||||||
Sbjct: 14691 gaaggaaaaggaaaaagaga 14672
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>gb|U48803.1|RNU48803 Rattus norvegicus rod photoreceptor cyclic GMP-gated cation channel
           alpha subunit gene, complete cds
          Length = 2052

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 65  gaaggaaaaggaaaaagaga 84
           ||||||||||||||||||||
Sbjct: 366 gaaggaaaaggaaaaagaga 385
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>gb|AC004981.2| Homo sapiens PAC clone RP5-1159C10 from 7, complete sequence
          Length = 149687

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 258   gaaaattcatttttatcaag 277
             ||||||||||||||||||||
Sbjct: 72608 gaaaattcatttttatcaag 72627
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>ref|NM_053497.1| Rattus norvegicus cyclic nucleotide gated channel alpha 1 (Cnga1),
           mRNA
          Length = 2148

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 65  gaaggaaaaggaaaaagaga 84
           ||||||||||||||||||||
Sbjct: 366 gaaggaaaaggaaaaagaga 385
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>emb|X64835.1|XLPOU3 X.laevis XlPOU3 mRNA for a POU-domain protein
          Length = 2496

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 65  gaaggaaaaggaaaaagaga 84
           ||||||||||||||||||||
Sbjct: 939 gaaggaaaaggaaaaagaga 958
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>gb|AC163100.4| Mus musculus chromosome 15, clone RP23-404G8, complete sequence
          Length = 199486

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 65    gaaggaaaaggaaaaagaga 84
             ||||||||||||||||||||
Sbjct: 27260 gaaggaaaaggaaaaagaga 27279
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>gb|AF334830.1| Homo sapiens cartilage-hair hypoplasia region gene sequence
          Length = 138754

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 22    agcttccccttttggaaatg 41
             ||||||||||||||||||||
Sbjct: 33337 agcttccccttttggaaatg 33318
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>dbj|AP007157.1| Aspergillus oryzae RIB40 genomic DNA, SC023
          Length = 2661830

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 65     gaaggaaaaggaaaaagaga 84
              ||||||||||||||||||||
Sbjct: 319110 gaaggaaaaggaaaaagaga 319129
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>gb|AC002332.3| Arabidopsis thaliana chromosome 2 clone F4P9 map ve015, complete
             sequence
          Length = 152593

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 254   gaatgaaaattcatttttat 273
             ||||||||||||||||||||
Sbjct: 22623 gaatgaaaattcatttttat 22642
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>gb|AC104211.3| Homo sapiens chromosome 8, clone RP11-100L22, complete sequence
          Length = 167984

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 175    gattagaaaatatcaccagt 194
              ||||||||||||||||||||
Sbjct: 112420 gattagaaaatatcaccagt 112439
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>gb|AC008628.6| Homo sapiens chromosome 5 clone CTB-161J7, complete sequence
          Length = 95908

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 248   aaagaggaatgaaaattcat 267
             ||||||||||||||||||||
Sbjct: 61344 aaagaggaatgaaaattcat 61363
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>dbj|AK041161.1| Mus musculus adult male aorta and vein cDNA, RIKEN full-length
           enriched library, clone:A530086M02
           product:unclassifiable, full insert sequence
          Length = 2958

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 65  gaaggaaaaggaaaaagaga 84
           ||||||||||||||||||||
Sbjct: 765 gaaggaaaaggaaaaagaga 784
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>gb|AC022193.5|AC022193 Homo sapiens, clone RP11-23B3, complete sequence
          Length = 184228

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 175   gattagaaaatatcaccagt 194
             ||||||||||||||||||||
Sbjct: 38226 gattagaaaatatcaccagt 38245
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>gb|DP000026.1| Pongo pygmaeus target 1 genomic scaffold
          Length = 1819346

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 26      tccccttttggaaatgctga 45
               ||||||||||||||||||||
Sbjct: 1339303 tccccttttggaaatgctga 1339322
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>ref|NM_007723.1| Mus musculus cyclic nucleotide gated channel alpha 1 (Cnga1), mRNA
          Length = 2474

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 65  gaaggaaaaggaaaaagaga 84
           ||||||||||||||||||||
Sbjct: 400 gaaggaaaaggaaaaagaga 419
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>gb|AC122733.11| Mus musculus chromosome 5, clone RP24-506B15, complete sequence
          Length = 157625

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 65    gaaggaaaaggaaaaagaga 84
             ||||||||||||||||||||
Sbjct: 93379 gaaggaaaaggaaaaagaga 93398
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>gb|AC099698.14| Mus musculus chromosome 5, clone RP23-415O9, complete sequence
          Length = 220813

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 65    gaaggaaaaggaaaaagaga 84
             ||||||||||||||||||||
Sbjct: 23822 gaaggaaaaggaaaaagaga 23803
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>gb|AF466202.2| Zea mays putative pol protein gene, partial cds; and putative gag-pol
             precursor -orf2, putative Fourf gag/pol protein, putative
             NADP-dependent malic enzyme, putative argonaute protein,
             putative pinhead protein, putative pol protein, putative
             gag protein, putative TNP2, r1-B73 proteins, putative
             genetic modifier, putative S-receptor kinase, putative
             aldose reductase-related protein, putative glutathione
             peroxidase, putative glycerol 3-phosphate permease,
             putative response regulator, and putative 4-coumarate-CoA
             ligase-like protein genes, complete cds
          Length = 290350

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 276   aggcccagcacaggctgcag 295
             ||||||||||||||||||||
Sbjct: 32442 aggcccagcacaggctgcag 32423
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>gb|AC118234.10| Mus musculus chromosome 15, clone RP23-463J9, complete sequence
          Length = 198519

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 65     gaaggaaaaggaaaaagaga 84
              ||||||||||||||||||||
Sbjct: 166915 gaaggaaaaggaaaaagaga 166934
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>gb|U93851.1|RNU93851 Rattus norvegicus rod-type cyclic nucleotide-gated cation channel
           mRNA, complete cds
          Length = 2148

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 65  gaaggaaaaggaaaaagaga 84
           ||||||||||||||||||||
Sbjct: 366 gaaggaaaaggaaaaagaga 385
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>emb|AL837518.17| Mouse DNA sequence from clone RP23-312M16 on chromosome 1, complete
              sequence
          Length = 187003

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 28     cccttttggaaatgctgaaa 47
              ||||||||||||||||||||
Sbjct: 143389 cccttttggaaatgctgaaa 143370
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>emb|AL133410.32| Human DNA sequence from clone RP11-112J3 on chromosome 9p13.1-13.3
              Contains the 3' end of the CA9 gene for carbonic anhydrase
              IX (MN), the TPM2 gene for tropomyosin 2 (beta) (DA1, TMSB,
              AMCD1), the TLN1 gene for talin 1 (TLN, KIAA1027), the
              CREB3 gene for cAMP responsive element binding protein 3
              (luman) (LZIP, LUMAN, MGC15333, MGC19782), the GBA2 gene
              for glucosidase, beta (bile acid) 2 (AD035, KIAA1605,
              MGC16895, DKFZp762K054), a novel gene (KIAA0258), five
              novel genes, the NPR2 gene for natriuretic peptide receptor
              B/guanylate cyclase B (atrionatriuretic peptide receptor B)
              (NPRB, ANPRB, GUC2B, NPRBi), the SPAG8 gene for sperm
              associated antigen 8 (SMP1, BS-84, HSD-1, hSMP-1,
              MGC26201), the HINT2 gene for Histidine triad nucleotide
              binding protein 2, the gene for NAG-5 protein (LOC51754),
              an olfactory receptor pseudogene, the gene for a novel
              seven transmembrane helix receptor, a NADH dehydrogenase
              (ubiquinone) 1 alpha subcomplex, 5,13kDa (B13, NUFM,
              UQOR13, FLJ12147, CI-13KD-B) (NDUFA5) pseudogene and six
              CpG islands, complete sequence
          Length = 195379

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 22     agcttccccttttggaaatg 41
              ||||||||||||||||||||
Sbjct: 145021 agcttccccttttggaaatg 145002
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>gb|AC005138.1|AC005138 Homo sapiens chromosome 17, clone hRPK.261_A_13, complete sequence
          Length = 145618

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 22     agcttccccttttggaaatg 41
              ||||||||||||||||||||
Sbjct: 108176 agcttccccttttggaaatg 108195
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>gb|AC135511.4| Mus musculus BAC clone RP23-255B19 from 3, complete sequence
          Length = 195384

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 65     gaaggaaaaggaaaaagaga 84
              ||||||||||||||||||||
Sbjct: 101469 gaaggaaaaggaaaaagaga 101450
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>emb|AL117187.7|CNS01DRD Human chromosome 14 DNA sequence BAC R-725G5 of library RPCI-11 from
            chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 195835

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 262  attcatttttatcaaggccc 281
            ||||||||||||||||||||
Sbjct: 2434 attcatttttatcaaggccc 2415
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>gb|U19717.1|MMU19717 Mus musculus cGMP-gated cation channel mRNA, clone mIMCD-K2 no.1,
           complete cds
          Length = 2297

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 65  gaaggaaaaggaaaaagaga 84
           ||||||||||||||||||||
Sbjct: 366 gaaggaaaaggaaaaagaga 385
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>emb|AL671880.15| Mouse DNA sequence from clone RP23-384C22 on chromosome X, complete
              sequence
          Length = 200535

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 65     gaaggaaaaggaaaaagaga 84
              ||||||||||||||||||||
Sbjct: 100054 gaaggaaaaggaaaaagaga 100073
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>gb|M84742.1|MUSCNCG Mus musculus cGMP-gated cation channel protein mRNA, complete cds
          Length = 2474

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 65  gaaggaaaaggaaaaagaga 84
           ||||||||||||||||||||
Sbjct: 400 gaaggaaaaggaaaaagaga 419
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>emb|AL583890.13| Mouse DNA sequence from clone RP23-212F17 on chromosome 3, complete
             sequence
          Length = 122919

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 57    ttaacactgaaggaaaagga 76
             ||||||||||||||||||||
Sbjct: 36529 ttaacactgaaggaaaagga 36548


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,559,673
Number of Sequences: 3902068
Number of extensions: 4559673
Number of successful extensions: 118551
Number of sequences better than 10.0: 65
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 118385
Number of HSP's gapped (non-prelim): 166
length of query: 303
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 281
effective length of database: 17,147,199,772
effective search space: 4818363135932
effective search space used: 4818363135932
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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