ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl21a12 |
|---|---|
| Clone Library Name | barley_pub |
>YCFI_YEAST (P39109) Metal resistance protein YCF1 (Yeast cadmium factor 1)| Length = 1515 Score = 31.2 bits (69), Expect = 0.61 Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 1/80 (1%) Frame = +3 Query: 6 YVASSLL-LHYIHSFIYNNTQNVMYSTTSHDAKCSTSCHKIYSSVSCLFGWL*IVWSQIH 182 Y+ S+L L Y S + +N + + ST S K+ L WL ++WS Sbjct: 376 YIKSALTALIYQKSLVLSNEASGLSSTGDIVNLMSVDVQKLQD----LTQWLNLIWS--- 428 Query: 183 KA*KAPYQQLVCLESVHKLL 242 P+Q ++CL S++KLL Sbjct: 429 ----GPFQIIICLYSLYKLL 444
>Y4628_STRCO (Q04296) Putative HTH-type transcriptional regulator SCO4628| Length = 269 Score = 29.3 bits (64), Expect = 2.3 Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 5/75 (6%) Frame = -1 Query: 408 EVLDLKPEG-GSGARVRRSWGCCSLKGKEAVFRSEGVGFKRRGQVEE-GSGGLQR---RP 244 ++ DL G GS V R++ +G A+ R G +R+ ++ G G + R Sbjct: 32 QIRDLVEAGEGSKETVHRAYKALETEGLVAMSRGHGTVVRRKAPLKRLGIGRYDKAKWRD 91 Query: 243 GEVCAQIQDRLAAGR 199 G+ A I DR+A+GR Sbjct: 92 GDEVAFIADRVASGR 106
>VPS34_SCHPO (P50520) Phosphatidylinositol 3-kinase vps34 (EC 2.7.1.137)| (PtdIns-3-kinase vps34) (PI3-kinase vps34) (PI3K vps34) (Vacuolar sorting protein 34) Length = 801 Score = 29.3 bits (64), Expect = 2.3 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 6/51 (11%) Frame = -2 Query: 191 SCLVYLRPDNL*PAKETRNRGI------NFVAACATFCVM*CCRVHYILGV 57 S L YLR +N + N GI N+V +CA +CV + Y+LGV Sbjct: 610 SVLAYLRENNPDDGLNSANYGIDPVAMDNYVRSCAGYCV-----ITYLLGV 655
>DDX54_HUMAN (Q8TDD1) ATP-dependent RNA helicase DDX54 (EC 3.6.1.-) (DEAD box| protein 54) (ATP-dependent RNA helicase DP97) Length = 881 Score = 28.9 bits (63), Expect = 3.0 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 8/49 (16%) Frame = +3 Query: 15 SSLLLHYIHSFIYNNTQNVMYSTTSHDAKCST--------SCHKIYSSV 137 +++LLH +H+ + Q V++ T H A+ T SC IYS++ Sbjct: 324 AAVLLHLLHNVVRPQDQTVVFVATKHHAEYLTELLTTQRVSCAHIYSAL 372
>GPRK2_DROME (P32866) G protein-coupled receptor kinase 2 (EC 2.7.11.16)| Length = 714 Score = 28.5 bits (62), Expect = 4.0 Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 15/77 (19%) Frame = -1 Query: 333 GKEAVFRSEGVGFKRRGQVEEGSGG--------------LQRRPGEVCAQIQDRL-AAGR 199 G E+V EG +G EG GG L ++ AQ++++L + G+ Sbjct: 203 GDESVKCQEGHDDAEKGGGGEGGGGGKCVHVGGYPDELVLDVLNDDLIAQVRNKLNSGGK 262 Query: 198 ELFMPCVSETRQFIASQ 148 ++F CV+ + F+A + Sbjct: 263 DIFAQCVNAVKAFLAGE 279
>FTSY_NEIMA (P57010) Cell division protein ftsY homolog| Length = 421 Score = 28.1 bits (61), Expect = 5.2 Identities = 16/67 (23%), Positives = 28/67 (41%) Frame = -1 Query: 327 EAVFRSEGVGFKRRGQVEEGSGGLQRRPGEVCAQIQDRLAAGRELFMPCVSETRQFIASQ 148 E + +E K QVE + GE Q+Q+ +A E + + +Q + Sbjct: 74 EMLSEAEEAAEKAAEQVEAAKEAIAETVGEAVGQVQEAVATTEEHKLGWAARLKQGLTKS 133 Query: 147 RDKKPRN 127 RDK ++ Sbjct: 134 RDKMAKS 140
>ABCA4_MOUSE (O35600) Retinal-specific ATP-binding cassette transporter| (ATP-binding cassette sub-family A member 4) (RIM ABC transporter) (RIM protein) (RmP) Length = 2310 Score = 28.1 bits (61), Expect = 5.2 Identities = 16/48 (33%), Positives = 25/48 (52%) Frame = -1 Query: 360 RSWGCCSLKGKEAVFRSEGVGFKRRGQVEEGSGGLQRRPGEVCAQIQD 217 RSW L+ EA+ G+ KR + ++ SGG+QR+ A + D Sbjct: 1033 RSWEEAQLE-MEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGD 1079
>FTSY_NEIMC (O30391) Cell division protein ftsY homolog| Length = 421 Score = 27.7 bits (60), Expect = 6.8 Identities = 16/67 (23%), Positives = 28/67 (41%) Frame = -1 Query: 327 EAVFRSEGVGFKRRGQVEEGSGGLQRRPGEVCAQIQDRLAAGRELFMPCVSETRQFIASQ 148 E + +E K QVE + GE Q+Q+ +A E + + +Q + Sbjct: 74 EMLSEAEEAAEKAAEQVEAAKEAVAETVGEAVGQVQEAVATTEEHKLGWAARLKQGLTKS 133 Query: 147 RDKKPRN 127 RDK ++ Sbjct: 134 RDKMAKS 140
>FTSY_NEIMB (P57011) Cell division protein ftsY homolog| Length = 421 Score = 27.7 bits (60), Expect = 6.8 Identities = 16/67 (23%), Positives = 28/67 (41%) Frame = -1 Query: 327 EAVFRSEGVGFKRRGQVEEGSGGLQRRPGEVCAQIQDRLAAGRELFMPCVSETRQFIASQ 148 E + +E K QVE + GE Q+Q+ +A E + + +Q + Sbjct: 74 EMLSEAEEAAEKAAEQVEAAKEAVAETVGEAVGQVQEAVATTEEHKLGWAARLKQGLTKS 133 Query: 147 RDKKPRN 127 RDK ++ Sbjct: 134 RDKMAKS 140
>TRHY_HUMAN (Q07283) Trichohyalin| Length = 1898 Score = 27.7 bits (60), Expect = 6.8 Identities = 13/32 (40%), Positives = 20/32 (62%) Frame = -3 Query: 382 RERRKGAQILGLLQPQRQRSCLQKRRRWVQAS 287 R+R+ + LL Q++R Q+RRRW QA+ Sbjct: 1217 RDRQSQQDLQHLLGEQQERDREQERRRWQQAN 1248
>BUB1B_HUMAN (O60566) Mitotic checkpoint serine/threonine-protein kinase BUB1| beta (EC 2.7.11.1) (hBUBR1) (MAD3/BUB1-related protein kinase) (Mitotic checkpoint kinase MAD3L) (SSK1) Length = 1050 Score = 27.7 bits (60), Expect = 6.8 Identities = 15/65 (23%), Positives = 32/65 (49%) Frame = -1 Query: 294 KRRGQVEEGSGGLQRRPGEVCAQIQDRLAAGRELFMPCVSETRQFIASQRDKKPRNKFCG 115 ++R ++++ ++++ E+ Q+R +E MP T+ IAS+ K P Sbjct: 437 EKRAEMQKQIEEMEKKLKEIQTTQQERTGDQQEETMPTKETTKLQIASESQKIPGMTLSS 496 Query: 114 SLCYI 100 S+C + Sbjct: 497 SVCQV 501
>RB3GP_BRARE (Q6NUV0) Rab3 GTPase-activating protein catalytic subunit| Length = 969 Score = 27.7 bits (60), Expect = 6.8 Identities = 16/63 (25%), Positives = 29/63 (46%) Frame = -1 Query: 312 SEGVGFKRRGQVEEGSGGLQRRPGEVCAQIQDRLAAGRELFMPCVSETRQFIASQRDKKP 133 S+G + RG EG+G P E + D + + F CVS+T + + + + Sbjct: 540 SDGARDRSRG-APEGAGPEGAGPAEAAGKSWDSWSDSEDEFFECVSDTEEMKEDKEEAEN 598 Query: 132 RNK 124 R++ Sbjct: 599 RSR 601
>NOS2_CANFA (O62699) Nitric oxide synthase, inducible (EC 1.14.13.39) (NOS type| II) (Inducible NO synthase) (Inducible NOS) (iNOS) Length = 1154 Score = 27.7 bits (60), Expect = 6.8 Identities = 17/63 (26%), Positives = 31/63 (49%) Frame = -1 Query: 399 DLKPEGGSGARVRRSWGCCSLKGKEAVFRSEGVGFKRRGQVEEGSGGLQRRPGEVCAQIQ 220 D+K +G G+R+ +GC ++ ++R E + + G + E R PG+ +Q Sbjct: 996 DIKHKGLRGSRMTLVFGC-RRPDEDHLYREEMLEMAQSGVLHEVHTAYSRLPGQPKVYVQ 1054 Query: 219 DRL 211 D L Sbjct: 1055 DIL 1057
>NU5M_PICCA (Q37024) NADH-ubiquinone oxidoreductase chain 5 (EC 1.6.5.3)| Length = 644 Score = 27.3 bits (59), Expect = 8.8 Identities = 16/46 (34%), Positives = 23/46 (50%) Frame = +2 Query: 35 YSFIHLQQHPKCNVLYNIT*RKM*HKLPQNLFLGFLSLWLAINCLV 172 YSFI++ Q K +YN + LP N F W+AI C++ Sbjct: 431 YSFINIPQLNK--YIYNSLSLNNTYSLPFNFKFNFDKSWMAIICMI 474
>NOS2_CHICK (Q90703) Nitric oxide synthase, inducible (EC 1.14.13.39) (NOS type| II) (Inducible NO synthase) (Inducible NOS) (iNOS) (Macrophage NOS) Length = 1136 Score = 27.3 bits (59), Expect = 8.8 Identities = 17/63 (26%), Positives = 31/63 (49%) Frame = -1 Query: 399 DLKPEGGSGARVRRSWGCCSLKGKEAVFRSEGVGFKRRGQVEEGSGGLQRRPGEVCAQIQ 220 DL+ +G G + +GC + +++ E KR+G ++E R+PG+ +Q Sbjct: 996 DLEKKGIKGGDMILLFGCRH-PDMDHIYKEEVEEMKRKGVLKEVFTAYSRQPGQPKVYVQ 1054 Query: 219 DRL 211 D L Sbjct: 1055 DIL 1057 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 54,072,931 Number of Sequences: 219361 Number of extensions: 1020157 Number of successful extensions: 2354 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 2313 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2353 length of database: 80,573,946 effective HSP length: 112 effective length of database: 56,005,514 effective search space used: 1344132336 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
