ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl21a11 |
|---|---|
| Clone Library Name | barley_pub |
>Y482_BUCAI (P57554) UPF0133 protein BU482| Length = 109 Score = 30.8 bits (68), Expect = 0.81 Identities = 27/108 (25%), Positives = 46/108 (42%), Gaps = 11/108 (10%) Frame = +1 Query: 40 LLEMLKQYMLTLKEKEEERCRQRVSGYCSIGVYRKLPNMAHNCVNVSLRLENITSQVDKF 219 L++ +Q + + +EE + V+G G+ + N AHNC V +VD Sbjct: 10 LMKQAQQMQEKMAKIQEEIAQMEVTGEAGAGLVKVTINGAHNCRRV---------EVDPS 60 Query: 220 SLQENKKV-----------QTQLVKRNENSFLSRPSTGCSRPSSRGFN 330 LQ++K + T+ + + +S STG P+ GFN Sbjct: 61 LLQDDKDMLEDLAAAAFNDATRRISEVQKKKMSAISTGMQLPN--GFN 106
>YN25_YEAST (P53831) Hypothetical 14.1 kDa protein in SEC21-MRPL10 intergenic| region Length = 123 Score = 30.4 bits (67), Expect = 1.1 Identities = 14/44 (31%), Positives = 24/44 (54%) Frame = +1 Query: 169 VNVSLRLENITSQVDKFSLQENKKVQTQLVKRNENSFLSRPSTG 300 +NV + LEN ++ + KF EN+ L ++N + +RP G Sbjct: 7 INVDIILENASNAIKKFERYENRTRVPTLEGWDDNHYTNRPCVG 50
>Y467_BUCAP (Q8K982) UPF0133 protein BUsg467| Length = 109 Score = 30.0 bits (66), Expect = 1.4 Identities = 26/108 (24%), Positives = 46/108 (42%), Gaps = 11/108 (10%) Frame = +1 Query: 40 LLEMLKQYMLTLKEKEEERCRQRVSGYCSIGVYRKLPNMAHNCVNVSLRLENITSQVDKF 219 L++ +Q + + +EE + V+G G+ + N AHNC V +VD Sbjct: 10 LMKQAQQMQEKMAKVQEEIAKMEVTGEAGAGLVKVTINGAHNCRRV---------EVDPS 60 Query: 220 SLQENKKV-----------QTQLVKRNENSFLSRPSTGCSRPSSRGFN 330 L+++K + T+ + + +S STG P+ GFN Sbjct: 61 LLKDDKDMLEDLAAAAFNDATRRISEVQKKKMSAISTGMQLPT--GFN 106
>YBAB_SHIFL (P0A8C0) UPF0133 protein ybaB| Length = 109 Score = 29.6 bits (65), Expect = 1.8 Identities = 18/73 (24%), Positives = 36/73 (49%) Frame = +1 Query: 40 LLEMLKQYMLTLKEKEEERCRQRVSGYCSIGVYRKLPNMAHNCVNVSLRLENITSQVDKF 219 L++ +Q +++ +EE + V+G G+ + N AHNC V ++D Sbjct: 10 LMKQAQQMQEKMQKMQEEIAQLEVTGESGAGLVKVTINGAHNCRRV---------EIDPS 60 Query: 220 SLQENKKVQTQLV 258 L+++K++ LV Sbjct: 61 LLEDDKEMLEDLV 73
>YBAB_SALTY (P0A8B8) UPF0133 protein ybaB| Length = 109 Score = 29.6 bits (65), Expect = 1.8 Identities = 18/73 (24%), Positives = 36/73 (49%) Frame = +1 Query: 40 LLEMLKQYMLTLKEKEEERCRQRVSGYCSIGVYRKLPNMAHNCVNVSLRLENITSQVDKF 219 L++ +Q +++ +EE + V+G G+ + N AHNC V ++D Sbjct: 10 LMKQAQQMQEKMQKMQEEIAQLEVTGESGAGLVKVTINGAHNCRRV---------EIDPS 60 Query: 220 SLQENKKVQTQLV 258 L+++K++ LV Sbjct: 61 LLEDDKEMLEDLV 73
>YBAB_SALTI (P0A8B9) UPF0133 protein ybaB| Length = 109 Score = 29.6 bits (65), Expect = 1.8 Identities = 18/73 (24%), Positives = 36/73 (49%) Frame = +1 Query: 40 LLEMLKQYMLTLKEKEEERCRQRVSGYCSIGVYRKLPNMAHNCVNVSLRLENITSQVDKF 219 L++ +Q +++ +EE + V+G G+ + N AHNC V ++D Sbjct: 10 LMKQAQQMQEKMQKMQEEIAQLEVTGESGAGLVKVTINGAHNCRRV---------EIDPS 60 Query: 220 SLQENKKVQTQLV 258 L+++K++ LV Sbjct: 61 LLEDDKEMLEDLV 73
>YBAB_ECOLI (P0A8B5) UPF0133 protein ybaB| Length = 109 Score = 29.6 bits (65), Expect = 1.8 Identities = 18/73 (24%), Positives = 36/73 (49%) Frame = +1 Query: 40 LLEMLKQYMLTLKEKEEERCRQRVSGYCSIGVYRKLPNMAHNCVNVSLRLENITSQVDKF 219 L++ +Q +++ +EE + V+G G+ + N AHNC V ++D Sbjct: 10 LMKQAQQMQEKMQKMQEEIAQLEVTGESGAGLVKVTINGAHNCRRV---------EIDPS 60 Query: 220 SLQENKKVQTQLV 258 L+++K++ LV Sbjct: 61 LLEDDKEMLEDLV 73
>YBAB_ECOL6 (P0A8B6) UPF0133 protein ybaB| Length = 109 Score = 29.6 bits (65), Expect = 1.8 Identities = 18/73 (24%), Positives = 36/73 (49%) Frame = +1 Query: 40 LLEMLKQYMLTLKEKEEERCRQRVSGYCSIGVYRKLPNMAHNCVNVSLRLENITSQVDKF 219 L++ +Q +++ +EE + V+G G+ + N AHNC V ++D Sbjct: 10 LMKQAQQMQEKMQKMQEEIAQLEVTGESGAGLVKVTINGAHNCRRV---------EIDPS 60 Query: 220 SLQENKKVQTQLV 258 L+++K++ LV Sbjct: 61 LLEDDKEMLEDLV 73
>YBAB_ECO57 (P0A8B7) UPF0133 protein ybaB| Length = 109 Score = 29.6 bits (65), Expect = 1.8 Identities = 18/73 (24%), Positives = 36/73 (49%) Frame = +1 Query: 40 LLEMLKQYMLTLKEKEEERCRQRVSGYCSIGVYRKLPNMAHNCVNVSLRLENITSQVDKF 219 L++ +Q +++ +EE + V+G G+ + N AHNC V ++D Sbjct: 10 LMKQAQQMQEKMQKMQEEIAQLEVTGESGAGLVKVTINGAHNCRRV---------EIDPS 60 Query: 220 SLQENKKVQTQLV 258 L+++K++ LV Sbjct: 61 LLEDDKEMLEDLV 73
>ADCY2_HUMAN (Q08462) Adenylate cyclase type 2 (EC 4.6.1.1) (Adenylate cyclase| type II) (ATP pyrophosphate-lyase 2) (Adenylyl cyclase 2) Length = 1091 Score = 29.3 bits (64), Expect = 2.4 Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 4/58 (6%) Frame = +1 Query: 82 KEEERCRQRVSG---YCSIGVYRKLPNMAHNCVNVSLRL-ENITSQVDKFSLQENKKV 243 KE E R ++ G YC G+ LPN A NCV + L + E I D + N +V Sbjct: 327 KENECMRIKILGDCYYCVSGLPISLPNHAKNCVKMGLDMCEAIKKVRDATGVDINMRV 384
>Y326_HAEDU (Q7VNZ1) UPF0133 protein HD_0326| Length = 109 Score = 29.3 bits (64), Expect = 2.4 Identities = 18/83 (21%), Positives = 39/83 (46%) Frame = +1 Query: 40 LLEMLKQYMLTLKEKEEERCRQRVSGYCSIGVYRKLPNMAHNCVNVSLRLENITSQVDKF 219 L++ +Q +++ +EE + V+G G+ + N AHNC + ++D Sbjct: 10 LMKQAQQMQERMQKMQEEIAQLEVTGESGAGLVKVTINGAHNCRRI---------EIDAS 60 Query: 220 SLQENKKVQTQLVKRNENSFLSR 288 ++++K++ LV N + R Sbjct: 61 LMEDDKEMVEDLVAAAFNDAVRR 83
>ADCY2_RAT (P26769) Adenylate cyclase type 2 (EC 4.6.1.1) (Adenylate cyclase| type II) (ATP pyrophosphate-lyase 2) (Adenylyl cyclase 2) Length = 1090 Score = 29.3 bits (64), Expect = 2.4 Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 4/58 (6%) Frame = +1 Query: 82 KEEERCRQRVSG---YCSIGVYRKLPNMAHNCVNVSLRL-ENITSQVDKFSLQENKKV 243 KE E R ++ G YC G+ LPN A NCV + L + E I D + N +V Sbjct: 326 KENECMRIKILGDCYYCVSGLPISLPNHAKNCVKMGLDMCEAIKKVRDATGVDINMRV 383
>ADCY2_MOUSE (Q80TL1) Adenylate cyclase type 2 (EC 4.6.1.1) (Adenylate cyclase| type II) (ATP pyrophosphate-lyase 2) (Adenylyl cyclase 2) Length = 1090 Score = 29.3 bits (64), Expect = 2.4 Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 4/58 (6%) Frame = +1 Query: 82 KEEERCRQRVSG---YCSIGVYRKLPNMAHNCVNVSLRL-ENITSQVDKFSLQENKKV 243 KE E R ++ G YC G+ LPN A NCV + L + E I D + N +V Sbjct: 326 KENECMRIKILGDCYYCVSGLPISLPNHAKNCVKMGLDMCEAIKKVRDATGVDINMRV 383
>SETX_HUMAN (Q7Z333) Probable helicase senataxin (EC 3.6.1.-) (SEN1 homolog)| Length = 2677 Score = 28.5 bits (62), Expect = 4.0 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 4/47 (8%) Frame = +1 Query: 28 LQLPLLEMLKQYMLTLKEKEEERCRQRV----SGYCSIGVYRKLPNM 156 L++PLLE+LK L L E+ E C + + CS V+ K P + Sbjct: 110 LRVPLLEILKYPYLLLHERVNELCVEALCRMEQANCSFQVFDKHPGI 156
>Y3121_YERPE (Q8ZC96) UPF0133 protein YPO3121/y1061/YP0808| Length = 110 Score = 28.5 bits (62), Expect = 4.0 Identities = 13/48 (27%), Positives = 25/48 (52%) Frame = +1 Query: 40 LLEMLKQYMLTLKEKEEERCRQRVSGYCSIGVYRKLPNMAHNCVNVSL 183 L++ +Q +++ +EE + V+G G+ + N AHNC V + Sbjct: 10 LMKQAQQMQEKMQQMQEEVAKLEVTGESGAGLVKVTINGAHNCRRVEI 57
>CRA2_HOMGA (P80007) Crustacyanin-A2 subunit| Length = 174 Score = 28.5 bits (62), Expect = 4.0 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 1/39 (2%) Frame = -1 Query: 116 PLTRCLHLSSSFSFSVNMYCFSISKRGSCKN-*Y*QLDF 3 P+TRC+H S++ +S N Y F ++ G N Y ++DF Sbjct: 42 PVTRCIH--SNYEYSTNDYGFKVTTAGFNPNDEYLKIDF 78
>ATKA_PROAC (Q6ABJ2) Potassium-transporting ATPase A chain (EC 3.6.3.12)| (Potassium-translocating ATPase A chain) (ATP phosphohydrolase [potassium-transporting] A chain) (Potassium-binding and translocating subunit A) Length = 556 Score = 28.1 bits (61), Expect = 5.3 Identities = 13/29 (44%), Positives = 16/29 (55%) Frame = -3 Query: 384 LIYRRNSVA*KGGRAVAGIEASAGWTTAA 298 L+Y S A G A AG++AS W AA Sbjct: 455 LVYAFTSAANNNGSAFAGLDASTNWLCAA 483
>RL5_ANOGA (O44248) 60S ribosomal protein L5| Length = 327 Score = 28.1 bits (61), Expect = 5.3 Identities = 11/25 (44%), Positives = 19/25 (76%) Frame = +1 Query: 61 YMLTLKEKEEERCRQRVSGYCSIGV 135 YM TL+E++EE +++ S Y S+G+ Sbjct: 207 YMRTLEEEDEEAFKRQFSKYISLGI 231
>ADCY7_BOVIN (Q29450) Adenylate cyclase type 7 (EC 4.6.1.1) (Adenylate cyclase| type VII) (ATP pyrophosphate-lyase 7) (Adenylyl cyclase 7) Length = 1078 Score = 28.1 bits (61), Expect = 5.3 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 3/46 (6%) Frame = +1 Query: 82 KEEERCRQRVSG---YCSIGVYRKLPNMAHNCVNVSLRLENITSQV 210 K E R ++ G YC G+ LPN A NCV + L + QV Sbjct: 316 KANECMRIKILGDCYYCVSGLPVSLPNHARNCVKMGLDMCEAIKQV 361
>Y442_HAEIN (P44711) UPF0233 protein HI0442| Length = 109 Score = 27.7 bits (60), Expect = 6.9 Identities = 17/83 (20%), Positives = 38/83 (45%) Frame = +1 Query: 40 LLEMLKQYMLTLKEKEEERCRQRVSGYCSIGVYRKLPNMAHNCVNVSLRLENITSQVDKF 219 L++ +Q +++ +EE + V+G G+ + N AHNC + +D Sbjct: 10 LMKQAQQMQEKMQKMQEEIAQLEVTGESGAGLVKITINGAHNCRRI---------DIDPS 60 Query: 220 SLQENKKVQTQLVKRNENSFLSR 288 ++++K++ L+ N + R Sbjct: 61 LMEDDKEMLEDLIAAAFNDAVRR 83
>Y205_PASMU (P57825) UPF0133 protein PM0205| Length = 109 Score = 27.7 bits (60), Expect = 6.9 Identities = 18/83 (21%), Positives = 38/83 (45%) Frame = +1 Query: 40 LLEMLKQYMLTLKEKEEERCRQRVSGYCSIGVYRKLPNMAHNCVNVSLRLENITSQVDKF 219 L++ +Q +++ +EE + V+G G+ + N AHNC V ++D Sbjct: 10 LMKQAQQMQDRMQKMQEEIAQLEVTGESGAGLVKITINGAHNCRRV---------EIDPS 60 Query: 220 SLQENKKVQTQLVKRNENSFLSR 288 ++++K + L+ N + R Sbjct: 61 LMEDDKDMLEDLIAAAFNDAVRR 83
>BACH2_MOUSE (P97303) Transcription regulator protein BACH2 (BTB and CNC homolog| 2) Length = 716 Score = 27.7 bits (60), Expect = 6.9 Identities = 14/44 (31%), Positives = 21/44 (47%) Frame = +1 Query: 181 LRLENITSQVDKFSLQENKKVQTQLVKRNENSFLSRPSTGCSRP 312 LR+ N+ F +QTQL+ R + F+ R + C RP Sbjct: 116 LRMHNLEDSCFSF-------LQTQLLNREDGLFVCRKDSACQRP 152
>PHOS_HUMAN (P20941) Phosducin (PHD) (33 kDa phototransducing protein) (MEKA| protein) Length = 246 Score = 27.3 bits (59), Expect = 9.0 Identities = 11/32 (34%), Positives = 20/32 (62%) Frame = +1 Query: 52 LKQYMLTLKEKEEERCRQRVSGYCSIGVYRKL 147 +++Y L KEKE+E C ++ C +++KL Sbjct: 74 IQEYELIHKEKEDENCLRKYRRQCMQDMHQKL 105
>Y3840_PHOLL (Q7N0P1) UPF0133 protein plu3840| Length = 109 Score = 27.3 bits (59), Expect = 9.0 Identities = 16/73 (21%), Positives = 35/73 (47%) Frame = +1 Query: 40 LLEMLKQYMLTLKEKEEERCRQRVSGYCSIGVYRKLPNMAHNCVNVSLRLENITSQVDKF 219 L++ +Q +++ +EE V+G G+ + N AHNC V ++D Sbjct: 10 LMKQAQQMQDKMQKMQEEIASLEVTGESGAGLVKVTINGAHNCRRV---------EIDPS 60 Query: 220 SLQENKKVQTQLV 258 ++++K++ L+ Sbjct: 61 LMEDDKEMLEDLI 73
>RL18_PYRHO (O59438) 50S ribosomal protein L18P| Length = 203 Score = 27.3 bits (59), Expect = 9.0 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%) Frame = +1 Query: 46 EMLKQYMLTLKEKEEERCRQRVSGYCSIGV-YRKLP 150 E + +Y LKE++E+R R++ GY G+ KLP Sbjct: 147 EHIAEYARMLKEQDEDRFRRQFGGYLEKGLDPEKLP 182
>RL18_PYRAB (Q9V1V4) 50S ribosomal protein L18P| Length = 203 Score = 27.3 bits (59), Expect = 9.0 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%) Frame = +1 Query: 46 EMLKQYMLTLKEKEEERCRQRVSGYCSIGV-YRKLP 150 E + +Y LKE++EE+ R++ GY G+ KLP Sbjct: 147 EHIAEYARMLKEQDEEKFRRQFGGYLEKGLDPEKLP 182
>GYRB_BUCAP (P29435) DNA gyrase subunit B (EC 5.99.1.3)| Length = 803 Score = 27.3 bits (59), Expect = 9.0 Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 23/104 (22%) Frame = +1 Query: 67 LTLKEKEEERC-------RQRVSGYCSIGVYRK-----LPNMAHNCVNVSLRLENITSQ- 207 + +K K+ E C ++ VS + I + K P + N + RL N+ ++ Sbjct: 564 IVIKNKKNENCNKIIKEFQKIVSDFNHIQIKMKKNKNYFPELILNELIYHPRLYNLKNEN 623 Query: 208 -----VDKFSLQENKK-----VQTQLVKRNENSFLSRPSTGCSR 309 ++K + NKK + T +KRNEN + PS SR Sbjct: 624 VVQNWIEKLVEKLNKKDKNNTIYTSKIKRNENDSIFEPSIKLSR 667 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 52,466,763 Number of Sequences: 219361 Number of extensions: 968319 Number of successful extensions: 2708 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 2658 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2706 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 1365190992 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
