ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl21a10 |
|---|---|
| Clone Library Name | barley_pub |
>LOX1_ORYSA (Q76I22) Lipoxygenase 1 (EC 1.13.11.12) (9-lipoxygenase) (r9-LOX1)| Length = 863 Score = 39.3 bits (90), Expect = 0.005 Identities = 18/22 (81%), Positives = 20/22 (90%) Frame = -3 Query: 450 TSDHTGQAEGLTARGIPNSISI 385 TSD+ G AEG+TARGIPNSISI Sbjct: 842 TSDNKGAAEGITARGIPNSISI 863
>LOX1_HORVU (P29114) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 39.3 bits (90), Expect = 0.005 Identities = 18/22 (81%), Positives = 19/22 (86%) Frame = -3 Query: 450 TSDHTGQAEGLTARGIPNSISI 385 TSDH G A GLTA+GIPNSISI Sbjct: 841 TSDHKGAAAGLTAKGIPNSISI 862
>LOX3_ORYSA (Q7G794) Putative lipoxygenase 3 (EC 1.13.11.12)| Length = 866 Score = 36.6 bits (83), Expect = 0.030 Identities = 17/22 (77%), Positives = 19/22 (86%) Frame = -3 Query: 450 TSDHTGQAEGLTARGIPNSISI 385 TSD TG A G+TA+GIPNSISI Sbjct: 845 TSDVTGAAAGITAKGIPNSISI 866
>LOX2_ORYSA (P29250) Lipoxygenase 2 (EC 1.13.11.12) (Lipoxygenase L-2)| Length = 870 Score = 35.0 bits (79), Expect = 0.088 Identities = 17/22 (77%), Positives = 18/22 (81%) Frame = -3 Query: 450 TSDHTGQAEGLTARGIPNSISI 385 TSD G A GL+ARGIPNSISI Sbjct: 849 TSDLKGDAAGLSARGIPNSISI 870
>LOX2_PEA (P14856) Seed lipoxygenase-2 (EC 1.13.11.12)| Length = 864 Score = 30.8 bits (68), Expect = 1.7 Identities = 14/19 (73%), Positives = 14/19 (73%) Frame = -3 Query: 441 HTGQAEGLTARGIPNSISI 385 H EGLT RGIPNSISI Sbjct: 846 HPSSKEGLTFRGIPNSISI 864
>LOXX_SOYBN (P24095) Seed lipoxygenase (EC 1.13.11.12)| Length = 864 Score = 29.6 bits (65), Expect = 3.7 Identities = 13/19 (68%), Positives = 14/19 (73%) Frame = -3 Query: 441 HTGQAEGLTARGIPNSISI 385 H EGLT +GIPNSISI Sbjct: 846 HRSSEEGLTFKGIPNSISI 864
>LOX2_SOYBN (P09439) Seed lipoxygenase-2 (EC 1.13.11.12) (L-2)| Length = 865 Score = 29.6 bits (65), Expect = 3.7 Identities = 13/15 (86%), Positives = 14/15 (93%) Frame = -3 Query: 429 AEGLTARGIPNSISI 385 +EGLT RGIPNSISI Sbjct: 851 SEGLTCRGIPNSISI 865
>PHF12_HUMAN (Q96QT6) PHD finger protein 12 (PHD factor 1) (Pf1)| Length = 1004 Score = 29.3 bits (64), Expect = 4.8 Identities = 12/21 (57%), Positives = 13/21 (61%) Frame = -1 Query: 449 PPTTRDRPRGSPPGASRTAYP 387 PP T RP GSPP A+R P Sbjct: 652 PPLTDSRPLGSPPNATRVLTP 672
>LOX4_ORYSA (Q53RB0) Probable lipoxygenase 4 (EC 1.13.11.12)| Length = 877 Score = 29.3 bits (64), Expect = 4.8 Identities = 16/23 (69%), Positives = 18/23 (78%), Gaps = 1/23 (4%) Frame = -3 Query: 450 TSDHTGQ-AEGLTARGIPNSISI 385 TSD T + +GLTA GIPNSISI Sbjct: 855 TSDVTKEKGQGLTAMGIPNSISI 877
>LOX1_LENCU (P38414) Lipoxygenase (EC 1.13.11.12)| Length = 866 Score = 29.3 bits (64), Expect = 4.8 Identities = 13/14 (92%), Positives = 13/14 (92%) Frame = -3 Query: 426 EGLTARGIPNSISI 385 EGLT RGIPNSISI Sbjct: 853 EGLTCRGIPNSISI 866
>LOXA_PHAVU (P27480) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 29.3 bits (64), Expect = 4.8 Identities = 14/18 (77%), Positives = 15/18 (83%) Frame = -3 Query: 438 TGQAEGLTARGIPNSISI 385 T + EGLT RGIPNSISI Sbjct: 845 TCEDEGLTFRGIPNSISI 862
>NOTC2_MOUSE (O35516) Neurogenic locus notch homolog protein 2 precursor (Notch| 2) (Motch B) [Contains: Notch 2 extracellular truncation; Notch 2 intracellular domain] Length = 2470 Score = 28.9 bits (63), Expect = 6.3 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 7/65 (10%) Frame = -3 Query: 312 CVCV-------CDRELCRCMNN*GNKGACTTGLIGMRKLSSAGYRSMHRRVQKKSLVLPN 154 C+C C ++ C++N G CT GL G + L AG+ ++ V K + Sbjct: 704 CICPEGPHHPSCYSQVNECLSNPCIHGNCTGGLSGYKCLCDAGWVGVNCEVDKNECLSNP 763 Query: 153 NEVGG 139 + GG Sbjct: 764 CQNGG 768
>NOTC2_HUMAN (Q04721) Neurogenic locus notch homolog protein 2 precursor (Notch| 2) (hN2) [Contains: Notch 2 extracellular truncation; Notch 2 intracellular domain] Length = 2471 Score = 28.9 bits (63), Expect = 6.3 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 7/65 (10%) Frame = -3 Query: 312 CVCV-------CDRELCRCMNN*GNKGACTTGLIGMRKLSSAGYRSMHRRVQKKSLVLPN 154 C+C C ++ C++N G CT GL G + L AG+ ++ V K + Sbjct: 706 CICPEGPHHPSCYSQVNECLSNPCIHGNCTGGLSGYKCLCDAGWVGINCEVDKNECLSNP 765 Query: 153 NEVGG 139 + GG Sbjct: 766 CQNGG 770
>LOX3_PEA (P09918) Seed lipoxygenase-3 (EC 1.13.11.12)| Length = 861 Score = 28.5 bits (62), Expect = 8.2 Identities = 13/14 (92%), Positives = 13/14 (92%) Frame = -3 Query: 426 EGLTARGIPNSISI 385 EGLT RGIPNSISI Sbjct: 848 EGLTFRGIPNSISI 861
>DSVA_DESVH (P45574) Sulfite reductase, dissimilatory-type alpha subunit (EC| 1.8.99.3) (Desulfoviridin alpha subunit) (Hydrogensulfite reductase alpha subunit) Length = 436 Score = 28.5 bits (62), Expect = 8.2 Identities = 17/57 (29%), Positives = 25/57 (43%) Frame = +2 Query: 122 AGGNITPPTSLLGKTRDFFCTRRCIDR*PAELSFRMPIRPVVHAPLLP*LFMHRHNS 292 +G N+ P S LGK+R C C D A M + +H P P F + ++ Sbjct: 166 SGSNLRTPESCLGKSR---CEFACYDSQAACYELTMEYQDELHRPAFPYKFKFKFDA 219
>LOX3_SOYBN (P09186) Seed lipoxygenase-3 (EC 1.13.11.12) (L-3)| Length = 857 Score = 28.5 bits (62), Expect = 8.2 Identities = 13/14 (92%), Positives = 13/14 (92%) Frame = -3 Query: 426 EGLTARGIPNSISI 385 EGLT RGIPNSISI Sbjct: 844 EGLTFRGIPNSISI 857
>LOX4_SOYBN (P38417) Lipoxygenase-4 (EC 1.13.11.12) (L-4) (VSP94)| Length = 853 Score = 28.5 bits (62), Expect = 8.2 Identities = 13/14 (92%), Positives = 13/14 (92%) Frame = -3 Query: 426 EGLTARGIPNSISI 385 EGLT RGIPNSISI Sbjct: 840 EGLTFRGIPNSISI 853
>LOX1_SOYBN (P08170) Seed lipoxygenase-1 (EC 1.13.11.12) (L-1)| Length = 839 Score = 28.5 bits (62), Expect = 8.2 Identities = 13/14 (92%), Positives = 13/14 (92%) Frame = -3 Query: 426 EGLTARGIPNSISI 385 EGLT RGIPNSISI Sbjct: 826 EGLTFRGIPNSISI 839 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 71,067,885 Number of Sequences: 219361 Number of extensions: 1470235 Number of successful extensions: 3850 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 3654 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3847 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2793557952 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
