ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl21a08 |
|---|---|
| Clone Library Name | barley_pub |
>NU145_YEAST (P49687) Nucleoporin NUP145 precursor (EC 3.4.21.-) (Nuclear pore| protein NUP145) [Contains: Nucleoporin NUP145N (N-NUP145); Nucleoporin NUP145C (C-NUP145)] Length = 1317 Score = 58.5 bits (140), Expect = 6e-09 Identities = 32/96 (33%), Positives = 53/96 (55%), Gaps = 1/96 (1%) Frame = -2 Query: 415 VYKDDSKKPPVGEGLNKAALVTLLNIKCMNGKTDEQYTQGPRFDKFKEMLVKKAEEQGVE 236 VY D++ KP +G GLN A++TL N+ ++ KT + +F +F+ K + + Sbjct: 528 VYPDEATKPMIGHGLNVPAIITLENVYPVDKKTKKPMKDTTKFAEFQVFDRKLRSMREMN 587 Query: 235 FISFDGAKGEWKFRVKHFSSYGF-GEAEADHLADSL 131 +IS++ G W F+V HFS +G E +A+ D L Sbjct: 588 YISYNPFGGTWTFKVNHFSIWGLVNEEDAEIDEDDL 623
>NUP98_HUMAN (P52948) Nuclear pore complex protein Nup98-Nup96 precursor| [Contains: Nuclear pore complex protein Nup98 (Nucleoporin Nup98) (98 kDa nucleoporin); Nuclear pore complex protein Nup96 (Nucleoporin Nup96) (96 kDa nucleoporin)] Length = 1729 Score = 58.5 bits (140), Expect = 6e-09 Identities = 34/94 (36%), Positives = 51/94 (54%), Gaps = 5/94 (5%) Frame = -2 Query: 415 VYKDDSKKPPVGEGLNKAALVTLLNIKCMNGKTDEQYTQGPRFDKFKEM-----LVKKAE 251 VY DD++KPPVGEGLN+ A VTL + KT + P D+ ++ L + Sbjct: 801 VYLDDNQKPPVGEGLNRKAEVTLDGV-WPTDKTSRCLIKSP--DRLADINYEGRLEAVSR 857 Query: 250 EQGVEFISFDGAKGEWKFRVKHFSSYGFGEAEAD 149 +QG +F + G W F+V HFS YG +++ + Sbjct: 858 KQGAQFKEYRPETGSWVFKVSHFSKYGLQDSDEE 891
>NUP98_RAT (P49793) Nuclear pore complex protein Nup98 (Nucleoporin Nup98) (98| kDa nucleoporin) Length = 937 Score = 58.5 bits (140), Expect = 6e-09 Identities = 34/94 (36%), Positives = 51/94 (54%), Gaps = 5/94 (5%) Frame = -2 Query: 415 VYKDDSKKPPVGEGLNKAALVTLLNIKCMNGKTDEQYTQGPRFDKFKEM-----LVKKAE 251 VY DD++KPPVGEGLN+ A VTL + KT + P D+ ++ L + Sbjct: 800 VYVDDNQKPPVGEGLNRKAEVTLDGV-WPTDKTSRCLIKSP--DRLADINYEGRLEAVSR 856 Query: 250 EQGVEFISFDGAKGEWKFRVKHFSSYGFGEAEAD 149 +QG +F + G W F+V HFS YG +++ + Sbjct: 857 KQGAQFKEYRPETGSWVFKVSHFSKYGLQDSDEE 890
>NU189_SCHPO (Q9UTK4) Nucleoporin nup189 (Nuclear pore protein nup189)| Length = 1778 Score = 50.8 bits (120), Expect = 1e-06 Identities = 29/89 (32%), Positives = 50/89 (56%) Frame = -2 Query: 415 VYKDDSKKPPVGEGLNKAALVTLLNIKCMNGKTDEQYTQGPRFDKFKEMLVKKAEEQGVE 236 VY + PP+GEGLN A++TL ++ +T E + P+ ++ + + + + E Sbjct: 860 VYPVEGSSPPLGEGLNVPAIITLEKTWPLSRETREP-IKDPQNPRYIQHVKRLHRIKDTE 918 Query: 235 FISFDGAKGEWKFRVKHFSSYGFGEAEAD 149 FI F+ G+W F+V+HFS YG + E + Sbjct: 919 FIDFN--DGKWIFKVQHFSRYGLLDDEEE 945
>NU100_YEAST (Q02629) Nucleoporin NUP100/NSP100 (Nuclear pore protein| NUP100/NSP100) Length = 959 Score = 31.6 bits (70), Expect = 0.78 Identities = 20/77 (25%), Positives = 36/77 (46%) Frame = -2 Query: 415 VYKDDSKKPPVGEGLNKAALVTLLNIKCMNGKTDEQYTQGPRFDKFKEMLVKKAEEQGVE 236 +Y++ S KP GEG+N VTL + ++ +T + + K + K E + Sbjct: 880 IYENCSIKPEKGEGINVRCRVTLYSCFPIDKET-RKPIKNITHPLLKRSIAKLKENPVYK 938 Query: 235 FISFDGAKGEWKFRVKH 185 F S+D G + + + H Sbjct: 939 FESYDPVTGTYSYTIDH 955
>UBP14_YEAST (P38237) Ubiquitin carboxyl-terminal hydrolase 14 (EC 3.1.2.15)| (Ubiquitin thioesterase 14) (Ubiquitin-specific-processing protease 14) (Deubiquitinating enzyme 14) (Glucose-induced degradation protein 6) Length = 803 Score = 30.0 bits (66), Expect = 2.3 Identities = 15/43 (34%), Positives = 20/43 (46%) Frame = +3 Query: 192 TLNFHSPLAPSNEINSTPCSSAFFTSISLNLSNLGPCVYCSSV 320 T NF P P N +N CSS T NL C++C ++ Sbjct: 196 TENFQIPSKPENTVNLNQCSSCDLT------QNLWLCLHCGNI 232
>UXAC_CLOPE (Q8XP14) Uronate isomerase (EC 5.3.1.12) (Glucuronate isomerase)| (Uronic isomerase) Length = 466 Score = 30.0 bits (66), Expect = 2.3 Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 1/77 (1%) Frame = -2 Query: 346 LNIKC-MNGKTDEQYTQGPRFDKFKEMLVKKAEEQGVEFISFDGAKGEWKFRVKHFSSYG 170 +N KC +N + + + FKE + K AE VE SFD K + R+ +F Y Sbjct: 173 INFKCSVNPSFRPEKAMKIQNEGFKEYIGKLAEVSNVEIKSFDDLKKALEIRLDYF--YE 230 Query: 169 FGEAEADHLADSL*LYR 119 G DH + + Y+ Sbjct: 231 NGCMITDHSLERVVFYK 247
>CXI8_CONRA (Q7Z091) I-superfamily conotoxin R11.8 (r11d)| Length = 41 Score = 28.5 bits (62), Expect = 6.6 Identities = 9/13 (69%), Positives = 10/13 (76%) Frame = -3 Query: 135 PCSFIDRCCNCCL 97 PCS+ CCNCCL Sbjct: 8 PCSYHADCCNCCL 20
>CXI17_CONRA (Q7Z093) I-superfamily conotoxin R11.17| Length = 46 Score = 28.5 bits (62), Expect = 6.6 Identities = 9/13 (69%), Positives = 10/13 (76%) Frame = -3 Query: 135 PCSFIDRCCNCCL 97 PCS+ CCNCCL Sbjct: 11 PCSYHADCCNCCL 23
>CXI14_CONRA (Q7Z092) I-superfamily conotoxin R11.14 (r11b)| Length = 46 Score = 28.5 bits (62), Expect = 6.6 Identities = 9/13 (69%), Positives = 10/13 (76%) Frame = -3 Query: 135 PCSFIDRCCNCCL 97 PCS+ CCNCCL Sbjct: 11 PCSYHADCCNCCL 23
>CDC25_YEAST (P04821) Cell division control protein 25| Length = 1589 Score = 28.5 bits (62), Expect = 6.6 Identities = 15/50 (30%), Positives = 25/50 (50%) Frame = +3 Query: 207 SPLAPSNEINSTPCSSAFFTSISLNLSNLGPCVYCSSVFPFMHLMFRRVT 356 SP+ S+ + SSAFF L L ++ P Y + + H ++ R+T Sbjct: 1276 SPIHMSSSSLPSSASSAFFRLKKLKLLDIDPYTYATQLTVLEHDLYLRIT 1325
>GPX4_CITSI (Q06652) Probable phospholipid hydroperoxide glutathione peroxidase| (EC 1.11.1.12) (PHGPx) (Salt-associated protein) Length = 167 Score = 28.1 bits (61), Expect = 8.6 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 1/61 (1%) Frame = -2 Query: 403 DSKKPPVGEGLNKAALVTLLNIKCMNGKTDEQYTQ-GPRFDKFKEMLVKKAEEQGVEFIS 227 D+K V + K L+ ++N+ G T+ YT+ +DK+K QG+E ++ Sbjct: 16 DAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYK--------NQGLEILA 67 Query: 226 F 224 F Sbjct: 68 F 68 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 58,701,585 Number of Sequences: 219361 Number of extensions: 1132125 Number of successful extensions: 3444 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 3351 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3438 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 2228238148 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
