ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl21a08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 216 4e-53
2gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 216 4e-53
3emb|AL844874.1|CNS08CAX Oryza sativa chromosome 12, . BAC OSJNBa... 216 4e-53
4gb|BT018715.1| Zea mays clone EL01N0517E03.d mRNA sequence 98 3e-17
5gb|BT018481.1| Zea mays clone EL01N0424C07.d mRNA sequence 92 2e-15
6gb|AY110896.1| Zea mays CL23032_-2 mRNA sequence 66 1e-07
7gb|AY389582.1| Hyacinthus orientalis nucleoporin mRNA, partial cds 54 4e-04
8gb|AC095044.3| Homo sapiens BAC clone RP11-132B16 from 7, comple... 44 0.36
9gb|AC142295.1| Pan troglodytes BAC clone RP43-80F20 from 7, comp... 44 0.36
10ref|XM_639988.1| Dictyostelium discoideum hypothetical protein (... 42 1.4
11ref|XM_639242.1| Dictyostelium discoideum hypothetical protein (... 42 1.4
12gb|AC155231.2| Mus musculus BAC clone RP24-336I23 from chromosom... 42 1.4
13gb|AC116984.2| Dictyostelium discoideum chromosome 2 map 2567470... 42 1.4
14emb|CT009613.14| Mouse DNA sequence from clone RP23-55L9 on chro... 42 1.4
15gb|AC101722.14| Mus musculus chromosome 5, clone RP23-310L24, co... 40 5.6
16gb|CP000352.1| Ralstonia metallidurans CH34, complete genome 40 5.6
17gb|AC110034.8| Mus musculus chromosome 3, clone RP23-237L12, com... 40 5.6
18gb|AE004177.1| Vibrio cholerae O1 biovar eltor str. N16961 chrom... 40 5.6
19gb|AC161535.5| Mus musculus chromosome 5, clone RP23-26J13, comp... 40 5.6
20emb|AL590542.4| Human DNA sequence from clone RP11-135F12 on chr... 40 5.6
21emb|BX842242.1| Homo sapiens chromosome 10 clone RP11-436O19, pa... 40 5.6
22emb|BX510311.6| Zebrafish DNA sequence from clone CH211-235F16, ... 40 5.6
23emb|BX647627.1|HSM807773 Homo sapiens mRNA; cDNA DKFZp686N04110 ... 40 5.6
24gb|AC182810.1| Gasterosteus aculeatus clone VMRC28-119K03, compl... 40 5.6
25gb|AC156552.10| Mus musculus chromosome 3, clone RP24-271K21, co... 40 5.6
26gb|AC002359.1|AC002359 Homo sapiens Xp22 Cosmid U239B3 (from Law... 40 5.6
27dbj|AP002980.2| Homo sapiens genomic DNA, chromosome 8q23, clone... 40 5.6
28emb|CR456628.8| Zebrafish DNA sequence from clone CH211-157H7 in... 40 5.6
29gb|L28808.1|RABMSD Oryctolagus cuniculus manganese superoxide di... 40 5.6

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score =  216 bits (109), Expect = 4e-53
 Identities = 220/257 (85%)
 Strand = Plus / Minus

                                                                           
Query: 159     gcttcaccaaacccgtaggagctgaagtgcttcactctgaacttccactcgcccttggcg 218
               ||||||||||| || ||||||||||| ||||| || ||||| ||||||||||||||||| 
Sbjct: 3343074 gcttcaccaaagccataggagctgaaatgcttgaccctgaatttccactcgcccttggca 3343015

                                                                           
Query: 219     ccatcaaacgagataaactccactccctgttcctcagccttcttcaccagcatctccttg 278
                |||| || ||||| |||||  | ||||| |||||||||||||||||||| |||||||||
Sbjct: 3343014 gcatcgaatgagatgaactcagcaccctgctcctcagccttcttcaccagtatctccttg 3342955

                                                                           
Query: 279     aacttgtcaaacctcggaccttgcgtgtactgctcgtccgtcttcccattcatgcacttg 338
                ||||| | | ||||||||| |  |||||||||||  ||||||||   ||||||||||||
Sbjct: 3342954 tacttgcccaccctcggaccctctgtgtactgctcccccgtcttcttgttcatgcacttg 3342895

                                                                           
Query: 339     atgttcaggagggtcaccaaagcagctttgttcaggccctcgccaactgggggcttcttg 398
               || || || ||||||||||  |||||||| ||||| ||||| ||||| ||||||||||||
Sbjct: 3342894 atattgagaagggtcaccacggcagctttattcagaccctcaccaacagggggcttcttg 3342835

                                
Query: 399     ctatcgtccttgtacac 415
               |||||||||||||||||
Sbjct: 3342834 ctatcgtccttgtacac 3342818



 Score =  208 bits (105), Expect = 1e-50
 Identities = 219/257 (85%)
 Strand = Plus / Minus

                                                                           
Query: 159     gcttcaccaaacccgtaggagctgaagtgcttcactctgaacttccactcgcccttggcg 218
               ||||||||||| || ||||||||||| ||||| || ||||| ||||||||||| ||| ||
Sbjct: 3351809 gcttcaccaaagccataggagctgaaatgcttgaccctgaatttccactcgccattgacg 3351750

                                                                           
Query: 219     ccatcaaacgagataaactccactccctgttcctcagccttcttcaccagcatctccttg 278
                |||| || ||||| |||||  | ||||| |||||||| |||||||||||||||||||||
Sbjct: 3351749 gcatcgaaagagatgaactcagcaccctgctcctcagctttcttcaccagcatctccttg 3351690

                                                                           
Query: 279     aacttgtcaaacctcggaccttgcgtgtactgctcgtccgtcttcccattcatgcacttg 338
                ||||||| | ||||||||| |  |||||||| ||  ||||||||   ||||||||||||
Sbjct: 3351689 tacttgtccaccctcggaccctctgtgtactgatcccccgtcttcttgttcatgcacttg 3351630

                                                                           
Query: 339     atgttcaggagggtcaccaaagcagctttgttcaggccctcgccaactgggggcttcttg 398
               || || || ||||||||||  |||||||| ||||| ||||| ||||| ||||||||||||
Sbjct: 3351629 atattgagaagggtcaccacggcagctttattcagaccctcaccaacagggggcttcttg 3351570

                                
Query: 399     ctatcgtccttgtacac 415
               |||||||||||||||||
Sbjct: 3351569 ctatcgtccttgtacac 3351553



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  216 bits (109), Expect = 4e-53
 Identities = 220/257 (85%)
 Strand = Plus / Minus

                                                                           
Query: 159     gcttcaccaaacccgtaggagctgaagtgcttcactctgaacttccactcgcccttggcg 218
               ||||||||||| || ||||||||||| ||||| || ||||| ||||||||||||||||| 
Sbjct: 3343019 gcttcaccaaagccataggagctgaaatgcttgaccctgaatttccactcgcccttggca 3342960

                                                                           
Query: 219     ccatcaaacgagataaactccactccctgttcctcagccttcttcaccagcatctccttg 278
                |||| || ||||| |||||  | ||||| |||||||||||||||||||| |||||||||
Sbjct: 3342959 gcatcgaatgagatgaactcagcaccctgctcctcagccttcttcaccagtatctccttg 3342900

                                                                           
Query: 279     aacttgtcaaacctcggaccttgcgtgtactgctcgtccgtcttcccattcatgcacttg 338
                ||||| | | ||||||||| |  |||||||||||  ||||||||   ||||||||||||
Sbjct: 3342899 tacttgcccaccctcggaccctctgtgtactgctcccccgtcttcttgttcatgcacttg 3342840

                                                                           
Query: 339     atgttcaggagggtcaccaaagcagctttgttcaggccctcgccaactgggggcttcttg 398
               || || || ||||||||||  |||||||| ||||| ||||| ||||| ||||||||||||
Sbjct: 3342839 atattgagaagggtcaccacggcagctttattcagaccctcaccaacagggggcttcttg 3342780

                                
Query: 399     ctatcgtccttgtacac 415
               |||||||||||||||||
Sbjct: 3342779 ctatcgtccttgtacac 3342763



 Score =  208 bits (105), Expect = 1e-50
 Identities = 219/257 (85%)
 Strand = Plus / Minus

                                                                           
Query: 159     gcttcaccaaacccgtaggagctgaagtgcttcactctgaacttccactcgcccttggcg 218
               ||||||||||| || ||||||||||| ||||| || ||||| ||||||||||| ||| ||
Sbjct: 3351754 gcttcaccaaagccataggagctgaaatgcttgaccctgaatttccactcgccattgacg 3351695

                                                                           
Query: 219     ccatcaaacgagataaactccactccctgttcctcagccttcttcaccagcatctccttg 278
                |||| || ||||| |||||  | ||||| |||||||| |||||||||||||||||||||
Sbjct: 3351694 gcatcgaaagagatgaactcagcaccctgctcctcagctttcttcaccagcatctccttg 3351635

                                                                           
Query: 279     aacttgtcaaacctcggaccttgcgtgtactgctcgtccgtcttcccattcatgcacttg 338
                ||||||| | ||||||||| |  |||||||| ||  ||||||||   ||||||||||||
Sbjct: 3351634 tacttgtccaccctcggaccctctgtgtactgatcccccgtcttcttgttcatgcacttg 3351575

                                                                           
Query: 339     atgttcaggagggtcaccaaagcagctttgttcaggccctcgccaactgggggcttcttg 398
               || || || ||||||||||  |||||||| ||||| ||||| ||||| ||||||||||||
Sbjct: 3351574 atattgagaagggtcaccacggcagctttattcagaccctcaccaacagggggcttcttg 3351515

                                
Query: 399     ctatcgtccttgtacac 415
               |||||||||||||||||
Sbjct: 3351514 ctatcgtccttgtacac 3351498



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>emb|AL844874.1|CNS08CAX Oryza sativa chromosome 12, . BAC OSJNBa0041K23 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 137936

 Score =  216 bits (109), Expect = 4e-53
 Identities = 220/257 (85%)
 Strand = Plus / Minus

                                                                         
Query: 159   gcttcaccaaacccgtaggagctgaagtgcttcactctgaacttccactcgcccttggcg 218
             ||||||||||| || ||||||||||| ||||| || ||||| ||||||||||||||||| 
Sbjct: 22127 gcttcaccaaagccataggagctgaaatgcttgaccctgaatttccactcgcccttggca 22068

                                                                         
Query: 219   ccatcaaacgagataaactccactccctgttcctcagccttcttcaccagcatctccttg 278
              |||| || ||||| |||||  | ||||| |||||||||||||||||||| |||||||||
Sbjct: 22067 gcatcgaatgagatgaactcagcaccctgctcctcagccttcttcaccagtatctccttg 22008

                                                                         
Query: 279   aacttgtcaaacctcggaccttgcgtgtactgctcgtccgtcttcccattcatgcacttg 338
              ||||| | | ||||||||| |  |||||||||||  ||||||||   ||||||||||||
Sbjct: 22007 tacttgcccaccctcggaccctctgtgtactgctcccccgtcttcttgttcatgcacttg 21948

                                                                         
Query: 339   atgttcaggagggtcaccaaagcagctttgttcaggccctcgccaactgggggcttcttg 398
             || || || ||||||||||  |||||||| ||||| ||||| ||||| ||||||||||||
Sbjct: 21947 atattgagaagggtcaccacggcagctttattcagaccctcaccaacagggggcttcttg 21888

                              
Query: 399   ctatcgtccttgtacac 415
             |||||||||||||||||
Sbjct: 21887 ctatcgtccttgtacac 21871



 Score =  208 bits (105), Expect = 1e-50
 Identities = 219/257 (85%)
 Strand = Plus / Minus

                                                                         
Query: 159   gcttcaccaaacccgtaggagctgaagtgcttcactctgaacttccactcgcccttggcg 218
             ||||||||||| || ||||||||||| ||||| || ||||| ||||||||||| ||| ||
Sbjct: 30862 gcttcaccaaagccataggagctgaaatgcttgaccctgaatttccactcgccattgacg 30803

                                                                         
Query: 219   ccatcaaacgagataaactccactccctgttcctcagccttcttcaccagcatctccttg 278
              |||| || ||||| |||||  | ||||| |||||||| |||||||||||||||||||||
Sbjct: 30802 gcatcgaaagagatgaactcagcaccctgctcctcagctttcttcaccagcatctccttg 30743

                                                                         
Query: 279   aacttgtcaaacctcggaccttgcgtgtactgctcgtccgtcttcccattcatgcacttg 338
              ||||||| | ||||||||| |  |||||||| ||  ||||||||   ||||||||||||
Sbjct: 30742 tacttgtccaccctcggaccctctgtgtactgatcccccgtcttcttgttcatgcacttg 30683

                                                                         
Query: 339   atgttcaggagggtcaccaaagcagctttgttcaggccctcgccaactgggggcttcttg 398
             || || || ||||||||||  |||||||| ||||| ||||| ||||| ||||||||||||
Sbjct: 30682 atattgagaagggtcaccacggcagctttattcagaccctcaccaacagggggcttcttg 30623

                              
Query: 399   ctatcgtccttgtacac 415
             |||||||||||||||||
Sbjct: 30622 ctatcgtccttgtacac 30606



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>gb|BT018715.1| Zea mays clone EL01N0517E03.d mRNA sequence
          Length = 1871

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 76/85 (89%)
 Strand = Plus / Minus

                                                                        
Query: 332  gcacttgatgttcaggagggtcaccaaagcagctttgttcaggccctcgccaactggggg 391
            ||||||||||||||| || ||||||   ||||| |||||||| |||||||| || |||||
Sbjct: 1410 gcacttgatgttcagtagagtcacctctgcagccttgttcagcccctcgcccacaggggg 1351

                                     
Query: 392  cttcttgctatcgtccttgtacaca 416
            |||||||||||||||||||||||||
Sbjct: 1350 cttcttgctatcgtccttgtacaca 1326



 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 99/116 (85%), Gaps = 1/116 (0%)
 Strand = Plus / Minus

                                                                        
Query: 161  ttcaccaaa-cccgtaggagctgaagtgcttcactctgaacttccactcgcccttggcgc 219
            ||||||||| |||||||| ||||||||||||||| |||||||||||||| |||||| |  
Sbjct: 1579 ttcaccaaagcccgtaggcgctgaagtgcttcaccctgaacttccactctcccttgacag 1520

                                                                    
Query: 220  catcaaacgagataaactccactccctgttcctcagccttcttcaccagcatctcc 275
            | || || || | ||||||  | ||||| ||||| |||||||||||||||||||||
Sbjct: 1519 cgtcgaaggacacaaactctgcgccctgctcctccgccttcttcaccagcatctcc 1464



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>gb|BT018481.1| Zea mays clone EL01N0424C07.d mRNA sequence
          Length = 1900

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 88/102 (86%)
 Strand = Plus / Minus

                                                                        
Query: 174  taggagctgaagtgcttcactctgaacttccactcgcccttggcgccatcaaacgagata 233
            |||| |||||| |||||||| |||||||||||||| ||||||||  ||||||| || | |
Sbjct: 1730 taggcgctgaaatgcttcaccctgaacttccactctcccttggcagcatcaaaggacaca 1671

                                                      
Query: 234  aactccactccctgttcctcagccttcttcaccagcatctcc 275
            |||||| | ||||| ||||| |||||||||| ||||||||||
Sbjct: 1670 aactccgcgccctgctcctccgccttcttcatcagcatctcc 1629



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 69/81 (85%)
 Strand = Plus / Minus

                                                                        
Query: 332  gcacttgatgttcaggagggtcaccaaagcagctttgttcaggccctcgccaactggggg 391
            ||||||||||||||| || ||||||   ||||| |||||||| ||||| || || |||||
Sbjct: 1572 gcacttgatgttcagtagagtcacctccgcagccttgttcagcccctcacccacaggggg 1513

                                 
Query: 392  cttcttgctatcgtccttgta 412
            |||||| || |||||||||||
Sbjct: 1512 cttcttcctgtcgtccttgta 1492



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>gb|AY110896.1| Zea mays CL23032_-2 mRNA sequence
          Length = 625

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 48/53 (90%)
 Strand = Plus / Plus

                                                                
Query: 174 taggagctgaagtgcttcactctgaacttccactcgcccttggcgccatcaaa 226
           |||| ||||||||||||||| |||||||||||||| ||||||||  |||||||
Sbjct: 184 taggcgctgaagtgcttcaccctgaacttccactctcccttggcagcatcaaa 236



 Score = 44.1 bits (22), Expect = 0.36
 Identities = 65/81 (80%)
 Strand = Plus / Plus

                                                                       
Query: 332 gcacttgatgttcaggagggtcaccaaagcagctttgttcaggccctcgccaactggggg 391
           ||||||||||||||| || ||||||   ||||| |||||||| ||||| || ||      
Sbjct: 342 gcacttgatgttcagtagagtcacctccgcagccttgttcagcccctcacccacannnnn 401

                                
Query: 392 cttcttgctatcgtccttgta 412
           ||||||||| |||||||||||
Sbjct: 402 cttcttgctgtcgtccttgta 422



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>gb|AY389582.1| Hyacinthus orientalis nucleoporin mRNA, partial cds
          Length = 732

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 30/31 (96%)
 Strand = Plus / Minus

                                          
Query: 178 agctgaagtgcttcactctgaacttccactc 208
           |||||||||||||||| ||||||||||||||
Sbjct: 418 agctgaagtgcttcaccctgaacttccactc 388



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>gb|AC095044.3| Homo sapiens BAC clone RP11-132B16 from 7, complete sequence
          Length = 134184

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 244  cctgttcctcagccttcttcac 265
            ||||||||||||||||||||||
Sbjct: 5906 cctgttcctcagccttcttcac 5885



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>gb|AC142295.1| Pan troglodytes BAC clone RP43-80F20 from 7, complete sequence
          Length = 165071

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 244    cctgttcctcagccttcttcac 265
              ||||||||||||||||||||||
Sbjct: 140564 cctgttcctcagccttcttcac 140543



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>ref|XM_639988.1| Dictyostelium discoideum hypothetical protein (DDB0168011), partial
           mRNA
          Length = 4611

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 86  atcatccaaaagaggcagcaattacaaca 114
           ||||||||||||| |||| ||||||||||
Sbjct: 494 atcatccaaaagatgcagaaattacaaca 522



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>ref|XM_639242.1| Dictyostelium discoideum hypothetical protein (DDB0217388), partial
           mRNA
          Length = 4611

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 86  atcatccaaaagaggcagcaattacaaca 114
           ||||||||||||| |||| ||||||||||
Sbjct: 494 atcatccaaaagatgcagaaattacaaca 522



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>gb|AC155231.2| Mus musculus BAC clone RP24-336I23 from chromosome 12, complete sequence
          Length = 175296

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 175    aggagctgaagtgcttcactctgaa 199
              |||||||| ||||||||||||||||
Sbjct: 135270 aggagctgtagtgcttcactctgaa 135294



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>gb|AC116984.2| Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4,
              complete sequence
          Length = 541399

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 86     atcatccaaaagaggcagcaattacaaca 114
              ||||||||||||| |||| ||||||||||
Sbjct: 178831 atcatccaaaagatgcagaaattacaaca 178803



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>emb|CT009613.14| Mouse DNA sequence from clone RP23-55L9 on chromosome 12, complete
              sequence
          Length = 214861

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 175    aggagctgaagtgcttcactctgaa 199
              |||||||| ||||||||||||||||
Sbjct: 206265 aggagctgtagtgcttcactctgaa 206241



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>gb|AC101722.14| Mus musculus chromosome 5, clone RP23-310L24, complete sequence
          Length = 172370

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 245    ctgttcctcagccttcttca 264
              ||||||||||||||||||||
Sbjct: 121775 ctgttcctcagccttcttca 121794



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>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome
          Length = 3928089

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 271    tctccttgaacttgtcaaac 290
              ||||||||||||||||||||
Sbjct: 509945 tctccttgaacttgtcaaac 509926



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>gb|AC110034.8| Mus musculus chromosome 3, clone RP23-237L12, complete sequence
          Length = 188908

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                              
Query: 235    actccactccctgttcctcagccttcttcacc 266
              |||||| | |||| ||||||||||||||||||
Sbjct: 134888 actccagtacctgctcctcagccttcttcacc 134857



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>gb|AE004177.1| Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, section 85 of
             251 of the complete chromosome
          Length = 21916

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 4     agaccaaaagcatcacaaccaata 27
             |||||||||||||| |||||||||
Sbjct: 15310 agaccaaaagcatcccaaccaata 15333



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>gb|AC161535.5| Mus musculus chromosome 5, clone RP23-26J13, complete sequence
          Length = 209259

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 245    ctgttcctcagccttcttca 264
              ||||||||||||||||||||
Sbjct: 202087 ctgttcctcagccttcttca 202068



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>emb|AL590542.4| Human DNA sequence from clone RP11-135F12 on chromosome 6, complete
            sequence
          Length = 43345

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 268  gcatctccttgaacttgtca 287
            ||||||||||||||||||||
Sbjct: 1794 gcatctccttgaacttgtca 1775



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>emb|BX842242.1| Homo sapiens chromosome 10 clone RP11-436O19, partial sequence
          Length = 111002

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 6      accaaaagcatcacaaccaa 25
              ||||||||||||||||||||
Sbjct: 101028 accaaaagcatcacaaccaa 101047



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>emb|BX510311.6| Zebrafish DNA sequence from clone CH211-235F16, complete sequence
          Length = 198245

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 389   gggcttcttgctatcgtcct 408
             ||||||||||||||||||||
Sbjct: 27829 gggcttcttgctatcgtcct 27810



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>emb|BX647627.1|HSM807773 Homo sapiens mRNA; cDNA DKFZp686N04110 (from clone DKFZp686N04110)
          Length = 8618

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 6    accaaaagcatcacaaccaa 25
            ||||||||||||||||||||
Sbjct: 1640 accaaaagcatcacaaccaa 1621



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>gb|AC182810.1| Gasterosteus aculeatus clone VMRC28-119K03, complete sequence
          Length = 131913

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 392   cttcttgctatcgtccttgtacac 415
             ||||||||| ||||||||||||||
Sbjct: 20028 cttcttgctgtcgtccttgtacac 20005



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>gb|AC156552.10| Mus musculus chromosome 3, clone RP24-271K21, complete sequence
          Length = 168716

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                              
Query: 235    actccactccctgttcctcagccttcttcacc 266
              |||||| | |||| ||||||||||||||||||
Sbjct: 168205 actccagtacctgctcctcagccttcttcacc 168236



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>gb|AC002359.1|AC002359 Homo sapiens Xp22 Cosmid U239B3 (from Lawrence Livermore X library)
            complete sequence
          Length = 16699

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 138  tcagccaggtggtcggcttc 157
            ||||||||||||||||||||
Sbjct: 8656 tcagccaggtggtcggcttc 8675



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>dbj|AP002980.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1058D3
          Length = 166683

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 326    attcatgcacttgatgttca 345
              ||||||||||||||||||||
Sbjct: 104715 attcatgcacttgatgttca 104734



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>emb|CR456628.8| Zebrafish DNA sequence from clone CH211-157H7 in linkage group 1,
             complete sequence
          Length = 168101

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 389   gggcttcttgctatcgtcct 408
             ||||||||||||||||||||
Sbjct: 96954 gggcttcttgctatcgtcct 96973



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>gb|L28808.1|RABMSD Oryctolagus cuniculus manganese superoxide dismutase mRNA, partial
           cds
          Length = 606

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 266 cagcatctccttgaacttgtcaaa 289
           |||| |||||||||||||||||||
Sbjct: 348 cagcctctccttgaacttgtcaaa 325


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,362,841
Number of Sequences: 3902068
Number of extensions: 3362841
Number of successful extensions: 63419
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 63325
Number of HSP's gapped (non-prelim): 94
length of query: 416
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 394
effective length of database: 17,147,199,772
effective search space: 6755996710168
effective search space used: 6755996710168
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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