ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl21a06 |
|---|---|
| Clone Library Name | barley_pub |
>RM04_YEAST (P36517) 60S ribosomal protein L4, mitochondrial precursor (YmL4)| (MRP-L4) Length = 319 Score = 34.7 bits (78), Expect = 0.060 Identities = 28/87 (32%), Positives = 38/87 (43%), Gaps = 11/87 (12%) Frame = +1 Query: 70 LRDATKFTVANR-----PSNSKRIKSNLTTATKQL----PKPPVDPILSCPNERPIWLF- 219 LR TKFT P + R + LT + L P PP L CP++ P+W F Sbjct: 13 LRARTKFTKPKPKQPVLPKDKIRPPTQLTHHSNNLRITEPIPPTTSNLRCPDDHPLWQFF 72 Query: 220 -HLP*INSYGPLPRSAHPIPSSFSPIK 297 + I S LP S+H P S ++ Sbjct: 73 SNKKFIRSADDLPPSSHIRPWSIPELR 99
>Y485_PSEAE (Q9I633) Hypothetical protein PA0485| Length = 298 Score = 31.2 bits (69), Expect = 0.66 Identities = 17/44 (38%), Positives = 22/44 (50%) Frame = +2 Query: 164 SLPWIQFFLVPTKGPFGYFTSLKSIPTAHYPGRPIQFHLLFPLS 295 SLPW+ L T G +G K P A PG ++ LL PL+ Sbjct: 149 SLPWVSLVLALTFGFYGLIR--KKAPVAALPGLVVETWLLLPLA 190
>SID2_USTMA (O43103) Ferrichrome siderophore peptide synthetase (EC 6.-.-.-)| Length = 3947 Score = 30.4 bits (67), Expect = 1.1 Identities = 11/20 (55%), Positives = 16/20 (80%) Frame = -3 Query: 129 FYSFGIGGTICNCKLGGVSQ 70 FY++G+GGTIC+C G + Q Sbjct: 478 FYTWGLGGTICSCPRGVLLQ 497
>COAT_MUMIM (P07302) Coat protein VP1 [Contains: Coat protein VP2]| Length = 718 Score = 29.6 bits (65), Expect = 1.9 Identities = 13/29 (44%), Positives = 16/29 (55%) Frame = +3 Query: 198 RKAHLVISPPLNQFLRPITPVGPSNSIFF 284 + A LV+ PPLN L P+G N I F Sbjct: 546 QSAPLVVPPPLNGILTNANPIGTKNDIHF 574
>M3K14_MOUSE (Q9WUL6) Mitogen-activated protein kinase kinase kinase 14 (EC| 2.7.11.25) (NF-kappa beta-inducing kinase) (Serine/threonine-protein kinase NIK) Length = 942 Score = 29.6 bits (65), Expect = 1.9 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 3/48 (6%) Frame = +1 Query: 157 LPKPPVDPILS---CPNERPIWLFHLP*INSYGPLPRSAHPIPSSFSP 291 LP+P + ++S C N +W H P + GP P HP P S P Sbjct: 221 LPRPELHKLISPLQCLNH--VWKLHHP--QATGPRPHPTHPFPYSGMP 264
>COAT_MUMIV (P03137) Coat protein VP1 [Contains: Coat protein VP2]| Length = 716 Score = 29.6 bits (65), Expect = 1.9 Identities = 13/29 (44%), Positives = 16/29 (55%) Frame = +3 Query: 198 RKAHLVISPPLNQFLRPITPVGPSNSIFF 284 + A LV+ PPLN L P+G N I F Sbjct: 544 QSAPLVVPPPLNGILTNANPIGTKNDIHF 572
>AMEL_MONDO (Q28462) Amelogenin| Length = 202 Score = 28.5 bits (62), Expect = 4.3 Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 4/72 (5%) Frame = +1 Query: 106 PSNSKRIKSNLTTATKQLPKPPVDPILSCPNERPI--WLFHLP*INSYGPLPRSAHPI-- 273 PS+S + ++ Q P PP P++ P + P+ H P + G P P Sbjct: 60 PSHSLPPQHHIPIMAAQQPAPPQQPVMPVPGQHPMAPTQHHQPNLPQPGQQPYQPQPAQQ 119 Query: 274 PSSFSPIK*NRP 309 P PI+ +P Sbjct: 120 PQPHQPIQPIQP 131
>ALDO2_ARATH (Q7G192) Aldehyde oxidase 2 (EC 1.2.3.1) (AtAO-2) (AtAO3)| Length = 1321 Score = 28.1 bits (61), Expect = 5.6 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 10/59 (16%) Frame = -1 Query: 170 GGFGSCFVAVVKFDFIRLELEGRFATVNLVASLKCSL----------FGRGNSSFHQLH 24 GG G+C V + KFD + ++E TV+ +L CS+ G FH +H Sbjct: 45 GGCGACVVLLSKFDPVLQKVED--FTVSSCLTLLCSVNHCNITTSEGLGNSRDGFHPIH 101
>YE45_SCHPO (O13965) Hypothetical protein C24C9.05c in chromosome I| Length = 730 Score = 28.1 bits (61), Expect = 5.6 Identities = 11/23 (47%), Positives = 17/23 (73%) Frame = +1 Query: 106 PSNSKRIKSNLTTATKQLPKPPV 174 PSN+++ +S + +QLPKPPV Sbjct: 434 PSNTQQSESTYEYSARQLPKPPV 456
>EXPA_DROME (Q07436) Protein expanded| Length = 1427 Score = 28.1 bits (61), Expect = 5.6 Identities = 19/53 (35%), Positives = 27/53 (50%) Frame = +1 Query: 151 KQLPKPPVDPILSCPNERPIWLFHLP*INSYGPLPRSAHPIPSSFSPIK*NRP 309 K+LP PP P ++ ++P +P S P P + PIPS SPI +P Sbjct: 1196 KRLPPPPPPPYVNRRLKKP----PMP-APSEKPPPIPSKPIPSRMSPIPPRKP 1243
>Y34F_DROME (Q9W5D0) Hypothetical protein CG12467 in chromosome 1| Length = 1561 Score = 28.1 bits (61), Expect = 5.6 Identities = 18/62 (29%), Positives = 30/62 (48%) Frame = +1 Query: 64 EHLRDATKFTVANRPSNSKRIKSNLTTATKQLPKPPVDPILSCPNERPIWLFHLP*INSY 243 EH+ D+ + ++ + ++ LT A + P ILS ER WL+HL ++ Sbjct: 811 EHVSDSD----SEEREDAAQDQARLTVAIYPAHQGPTYLILSGKPERDNWLYHLTVVSGG 866 Query: 244 GP 249 GP Sbjct: 867 GP 868
>COFA1_MOUSE (O35206) Collagen alpha-1(XV) chain precursor [Contains: Endostatin| (Endostatin-XV)] Length = 1367 Score = 28.1 bits (61), Expect = 5.6 Identities = 13/27 (48%), Positives = 19/27 (70%) Frame = +1 Query: 160 PKPPVDPILSCPNERPIWLFHLP*INS 240 P+PP++PILS ERP+ HL +N+ Sbjct: 1180 PQPPLNPILSANYERPV--LHLVALNT 1204
>Y907_MYCBO (P64740) Hypothetical protein Mb0907c| Length = 253 Score = 27.7 bits (60), Expect = 7.3 Identities = 20/62 (32%), Positives = 31/62 (50%) Frame = +3 Query: 156 TPKASRGSNSFLSQRKAHLVISPPLNQFLRPITPVGPSNSIFFFPYQMKSTLPTWNFSDH 335 TP A G+ + + AH +I+P N+ LRP+ PV + P Q T+P+ + Sbjct: 172 TPGAHGGTATAIDDT-AHELINPTFNRPLRPLAPVAHLDFDEPEPAQPTLTVPSAQPVSN 230 Query: 336 RR 341 RR Sbjct: 231 RR 232
>Y883_MYCTU (P64739) Hypothetical protein Rv0883c/MT0906| Length = 253 Score = 27.7 bits (60), Expect = 7.3 Identities = 20/62 (32%), Positives = 31/62 (50%) Frame = +3 Query: 156 TPKASRGSNSFLSQRKAHLVISPPLNQFLRPITPVGPSNSIFFFPYQMKSTLPTWNFSDH 335 TP A G+ + + AH +I+P N+ LRP+ PV + P Q T+P+ + Sbjct: 172 TPGAHGGTATAIDDT-AHELINPTFNRPLRPLAPVAHLDFDEPEPAQPTLTVPSAQPVSN 230 Query: 336 RR 341 RR Sbjct: 231 RR 232
>YTDK_CAEEL (Q19532) Hypothetical protein F17H10.3 in chromosome X| Length = 540 Score = 27.7 bits (60), Expect = 7.3 Identities = 13/47 (27%), Positives = 22/47 (46%) Frame = +1 Query: 61 NEHLRDATKFTVANRPSNSKRIKSNLTTATKQLPKPPVDPILSCPNE 201 +E L + T+ + K K N +++LP+ P PI+ NE Sbjct: 452 SEILYEHNNMTIEQQVMKEKHSKGNYVEKSEKLPRDPKKPIIVLKNE 498
>KI2L3_HUMAN (P43628) Killer cell immunoglobulin-like receptor 2DL3 precursor| (MHC class I NK cell receptor) (Natural killer-associated transcript 2) (NKAT-2) (NKAT2a) (NKAT2b) (p58 natural killer cell receptor clone CL-6) (p58 NK receptor) (p58.2 MHC cla Length = 341 Score = 27.3 bits (59), Expect = 9.6 Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 4/28 (14%) Frame = -1 Query: 314 REGRF----HLIGEKEDGIGWADRGNGP 243 REG+F HLIGE DG+ A+ GP Sbjct: 62 REGKFKDTLHLIGEHHDGVSKANFSIGP 89
>UNC13_CAEEL (P27715) Phorbol ester/diacylglycerol-binding protein unc-13| (Uncoordinated protein 13) Length = 2155 Score = 27.3 bits (59), Expect = 9.6 Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 3/67 (4%) Frame = +1 Query: 79 ATKFTVANRPSNSKRIKSNLTTATKQLPKPPVDPILSCPNERPIWLFHL---P*INSYGP 249 AT+F + +N+ K+ L + T+ P P P S N P + P +NS P Sbjct: 650 ATRFYANHNNNNNNVSKNELDSTTETPPDPSRTPSTSSMNPVPSLAVPMSPGPYLNSDPP 709 Query: 250 LPRSAHP 270 P S +P Sbjct: 710 SPVSPNP 716
>KI2S4_HUMAN (P43632) Killer cell immunoglobulin-like receptor 2DS4 precursor| (MHC class I NK cell receptor) (Natural killer-associated transcript 8) (NKAT-8) (P58 natural killer cell receptor clone CL-39) (p58 NK receptor) (CL-17) (CD158i antigen) Length = 304 Score = 27.3 bits (59), Expect = 9.6 Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 4/28 (14%) Frame = -1 Query: 314 REGRF----HLIGEKEDGIGWADRGNGP 243 REG+F HLIGE DG+ A+ GP Sbjct: 62 REGKFNNTLHLIGEHHDGVSKANFSIGP 89
>KI2L2_HUMAN (P43627) Killer cell immunoglobulin-like receptor 2DL2 precursor| (MHC class I NK cell receptor) (Natural killer-associated transcript 6) (NKAT-6) (p58 natural killer cell receptor clone CL-43) (p58 NK receptor) Length = 348 Score = 27.3 bits (59), Expect = 9.6 Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 4/28 (14%) Frame = -1 Query: 314 REGRF----HLIGEKEDGIGWADRGNGP 243 REG+F HLIGE DG+ A+ GP Sbjct: 62 REGKFKDTLHLIGEHHDGVSKANFSIGP 89 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 55,911,533 Number of Sequences: 219361 Number of extensions: 1177346 Number of successful extensions: 3203 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 3079 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3201 length of database: 80,573,946 effective HSP length: 90 effective length of database: 60,831,456 effective search space used: 1459954944 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
