ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl21a03 |
|---|---|
| Clone Library Name | barley_pub |
>LOX4_ORYSA (Q53RB0) Probable lipoxygenase 4 (EC 1.13.11.12)| Length = 877 Score = 118 bits (295), Expect = 8e-27 Identities = 58/73 (79%), Positives = 63/73 (86%) Frame = -2 Query: 450 TSDAKALEAFKRFGSRLVEVEKRILDMNKDPALKNRNGPVKMPYMLLYPNTSDANGGKAL 271 TSDAKAL+AFKRFGSRLV++E RI DMN + ALKNRNGPVKMPYMLLYPNTSD K Sbjct: 805 TSDAKALDAFKRFGSRLVDIENRIKDMNGNSALKNRNGPVKMPYMLLYPNTSDVTKEKGQ 864 Query: 270 GLTAMGIPNSVSI 232 GLTAMGIPNS+SI Sbjct: 865 GLTAMGIPNSISI 877
>LOX1_HORVU (P29114) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 106 bits (264), Expect = 3e-23 Identities = 52/73 (71%), Positives = 58/73 (79%) Frame = -2 Query: 450 TSDAKALEAFKRFGSRLVEVEKRILDMNKDPALKNRNGPVKMPYMLLYPNTSDANGGKAL 271 TSD KALE FKRF RLVE+E +++ MN DP LKNRNGP K PYMLLYPNTSD + G A Sbjct: 791 TSDPKALEVFKRFSDRLVEIESKVVGMNHDPELKNRNGPAKFPYMLLYPNTSD-HKGAAA 849 Query: 270 GLTAMGIPNSVSI 232 GLTA GIPNS+SI Sbjct: 850 GLTAKGIPNSISI 862
>LOX3_ORYSA (Q7G794) Putative lipoxygenase 3 (EC 1.13.11.12)| Length = 866 Score = 102 bits (253), Expect = 6e-22 Identities = 49/73 (67%), Positives = 58/73 (79%) Frame = -2 Query: 450 TSDAKALEAFKRFGSRLVEVEKRILDMNKDPALKNRNGPVKMPYMLLYPNTSDANGGKAL 271 TSDA+ALEAF+RF RLVE+E +++ MN D LKNRNGP + PYMLLYPNTSD G A Sbjct: 795 TSDARALEAFRRFSDRLVEIEGKVVGMNGDAGLKNRNGPAEFPYMLLYPNTSDVTGA-AA 853 Query: 270 GLTAMGIPNSVSI 232 G+TA GIPNS+SI Sbjct: 854 GITAKGIPNSISI 866
>LOX2_ORYSA (P29250) Lipoxygenase 2 (EC 1.13.11.12) (Lipoxygenase L-2)| Length = 870 Score = 102 bits (253), Expect = 6e-22 Identities = 51/73 (69%), Positives = 57/73 (78%) Frame = -2 Query: 450 TSDAKALEAFKRFGSRLVEVEKRILDMNKDPALKNRNGPVKMPYMLLYPNTSDANGGKAL 271 TSDAKALEAFKRFG+RL E+E R++ MNKDP KNR GP PY LLYPNTSD G A Sbjct: 799 TSDAKALEAFKRFGARLTEIESRVVAMNKDPHRKNRVGPTNFPYTLLYPNTSDLK-GDAA 857 Query: 270 GLTAMGIPNSVSI 232 GL+A GIPNS+SI Sbjct: 858 GLSARGIPNSISI 870
>LOX1_ORYSA (Q76I22) Lipoxygenase 1 (EC 1.13.11.12) (9-lipoxygenase) (r9-LOX1)| Length = 863 Score = 100 bits (249), Expect = 2e-21 Identities = 49/73 (67%), Positives = 58/73 (79%) Frame = -2 Query: 450 TSDAKALEAFKRFGSRLVEVEKRILDMNKDPALKNRNGPVKMPYMLLYPNTSDANGGKAL 271 TSD KALEAFKRF +LVE+E ++L+MNKDP LKNR GP PY L++PNTSD N G A Sbjct: 792 TSDPKALEAFKRFSRQLVEIESKVLNMNKDPLLKNRVGPANFPYTLMFPNTSD-NKGAAE 850 Query: 270 GLTAMGIPNSVSI 232 G+TA GIPNS+SI Sbjct: 851 GITARGIPNSISI 863
>LOX4_SOYBN (P38417) Lipoxygenase-4 (EC 1.13.11.12) (L-4) (VSP94)| Length = 853 Score = 85.9 bits (211), Expect = 4e-17 Identities = 42/73 (57%), Positives = 53/73 (72%) Frame = -2 Query: 450 TSDAKALEAFKRFGSRLVEVEKRILDMNKDPALKNRNGPVKMPYMLLYPNTSDANGGKAL 271 TSDA LEAFKRFG +L E+EK++++ NKD L+NR GP KMPY LLYP++ + Sbjct: 788 TSDAGPLEAFKRFGKKLEEIEKKLIEKNKDETLRNRYGPAKMPYTLLYPSSEE------- 840 Query: 270 GLTAMGIPNSVSI 232 GLT GIPNS+SI Sbjct: 841 GLTFRGIPNSISI 853
>LOX3_PEA (P09918) Seed lipoxygenase-3 (EC 1.13.11.12)| Length = 861 Score = 84.3 bits (207), Expect = 1e-16 Identities = 40/73 (54%), Positives = 54/73 (73%) Frame = -2 Query: 450 TSDAKALEAFKRFGSRLVEVEKRILDMNKDPALKNRNGPVKMPYMLLYPNTSDANGGKAL 271 TSD +ALEAFK+FG++L E+EK++ N D L+NR+GPV+MPY LLYP++ + Sbjct: 796 TSDKRALEAFKKFGNKLAEIEKKLTQRNNDEKLRNRHGPVEMPYTLLYPSSKE------- 848 Query: 270 GLTAMGIPNSVSI 232 GLT GIPNS+SI Sbjct: 849 GLTFRGIPNSISI 861
>LOXA_PHAVU (P27480) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 83.6 bits (205), Expect = 2e-16 Identities = 41/73 (56%), Positives = 53/73 (72%) Frame = -2 Query: 450 TSDAKALEAFKRFGSRLVEVEKRILDMNKDPALKNRNGPVKMPYMLLYPNTSDANGGKAL 271 T++ KAL+AFKRFG +L E+E++I+ NKD +L+NRNGPVKMPY +L P D Sbjct: 796 TNNIKALQAFKRFGQKLKEIEEKIMGRNKDSSLRNRNGPVKMPYTVLLPTCEDE------ 849 Query: 270 GLTAMGIPNSVSI 232 GLT GIPNS+SI Sbjct: 850 GLTFRGIPNSISI 862
>LOX1_LENCU (P38414) Lipoxygenase (EC 1.13.11.12)| Length = 866 Score = 79.3 bits (194), Expect = 4e-15 Identities = 38/73 (52%), Positives = 51/73 (69%) Frame = -2 Query: 450 TSDAKALEAFKRFGSRLVEVEKRILDMNKDPALKNRNGPVKMPYMLLYPNTSDANGGKAL 271 T+D+ EAFKRFG +L E+E+++ N D +L+NR GPVKMPY LLYP++ + Sbjct: 801 TTDSVPKEAFKRFGKKLAEIEEKLTQRNNDESLRNRYGPVKMPYTLLYPSSEE------- 853 Query: 270 GLTAMGIPNSVSI 232 GLT GIPNS+SI Sbjct: 854 GLTCRGIPNSISI 866
>LOX3_SOYBN (P09186) Seed lipoxygenase-3 (EC 1.13.11.12) (L-3)| Length = 857 Score = 78.6 bits (192), Expect = 7e-15 Identities = 38/73 (52%), Positives = 52/73 (71%) Frame = -2 Query: 450 TSDAKALEAFKRFGSRLVEVEKRILDMNKDPALKNRNGPVKMPYMLLYPNTSDANGGKAL 271 TSD +ALEAFKRFG++L ++E ++ + N D L+NR GPV+MPY LL P++ + Sbjct: 792 TSDTRALEAFKRFGNKLAQIENKLSERNNDEKLRNRCGPVQMPYTLLLPSSKE------- 844 Query: 270 GLTAMGIPNSVSI 232 GLT GIPNS+SI Sbjct: 845 GLTFRGIPNSISI 857
>LOX2_SOYBN (P09439) Seed lipoxygenase-2 (EC 1.13.11.12) (L-2)| Length = 865 Score = 77.4 bits (189), Expect = 2e-14 Identities = 37/73 (50%), Positives = 53/73 (72%) Frame = -2 Query: 450 TSDAKALEAFKRFGSRLVEVEKRILDMNKDPALKNRNGPVKMPYMLLYPNTSDANGGKAL 271 TSD+KAL+AF++FG++L E+E+++ N D +L NR GPV++PY LL+PN+ Sbjct: 801 TSDSKALQAFQKFGNKLKEIEEKLARKNNDQSLSNRLGPVQLPYTLLHPNSE-------- 852 Query: 270 GLTAMGIPNSVSI 232 GLT GIPNS+SI Sbjct: 853 GLTCRGIPNSISI 865
>LOX1_SOYBN (P08170) Seed lipoxygenase-1 (EC 1.13.11.12) (L-1)| Length = 839 Score = 77.4 bits (189), Expect = 2e-14 Identities = 38/74 (51%), Positives = 57/74 (77%), Gaps = 1/74 (1%) Frame = -2 Query: 450 TSDAKALEAFKRFGSRLVEVEKRILDMNKDPALK-NRNGPVKMPYMLLYPNTSDANGGKA 274 TSD+KAL+AF++FG++L E+E++++ N DP+L+ NR GPV++PY LLYP++ + Sbjct: 773 TSDSKALQAFQKFGNKLKEIEEKLVRRNNDPSLQGNRLGPVQLPYTLLYPSSEE------ 826 Query: 273 LGLTAMGIPNSVSI 232 GLT GIPNS+SI Sbjct: 827 -GLTFRGIPNSISI 839
>LOXX_SOYBN (P24095) Seed lipoxygenase (EC 1.13.11.12)| Length = 864 Score = 77.4 bits (189), Expect = 2e-14 Identities = 39/73 (53%), Positives = 52/73 (71%) Frame = -2 Query: 450 TSDAKALEAFKRFGSRLVEVEKRILDMNKDPALKNRNGPVKMPYMLLYPNTSDANGGKAL 271 T+D KALEAFKRFGS+L +E +I N DP+L+NR GPV++PY LL+ ++ + Sbjct: 799 TTDKKALEAFKRFGSKLTGIEGKINARNSDPSLRNRTGPVQLPYTLLHRSSEE------- 851 Query: 270 GLTAMGIPNSVSI 232 GLT GIPNS+SI Sbjct: 852 GLTFKGIPNSISI 864
>LOX2_PEA (P14856) Seed lipoxygenase-2 (EC 1.13.11.12)| Length = 864 Score = 77.4 bits (189), Expect = 2e-14 Identities = 36/73 (49%), Positives = 55/73 (75%) Frame = -2 Query: 450 TSDAKALEAFKRFGSRLVEVEKRILDMNKDPALKNRNGPVKMPYMLLYPNTSDANGGKAL 271 TSD+KAL+AF++FG++L E+E ++ + N DP+L +R GPV++PY LL+P++ + Sbjct: 799 TSDSKALQAFQKFGNKLAEIEAKLTNKNNDPSLYHRVGPVQLPYTLLHPSSKE------- 851 Query: 270 GLTAMGIPNSVSI 232 GLT GIPNS+SI Sbjct: 852 GLTFRGIPNSISI 864
>LOXB_PHAVU (P27481) Lipoxygenase (EC 1.13.11.12) (Fragment)| Length = 741 Score = 73.6 bits (179), Expect = 2e-13 Identities = 36/67 (53%), Positives = 45/67 (67%) Frame = -2 Query: 450 TSDAKALEAFKRFGSRLVEVEKRILDMNKDPALKNRNGPVKMPYMLLYPNTSDANGGKAL 271 TSDA LEAFKRFG +L E+EK+++ N D L+NR GP KMPY LLYP++ + Sbjct: 682 TSDAGPLEAFKRFGKKLAEIEKKLVQKNNDETLRNRTGPAKMPYTLLYPSSEE------- 734 Query: 270 GLTAMGI 250 GLT GI Sbjct: 735 GLTFRGI 741
>LOX1_ARATH (Q06327) Lipoxygenase 1 (EC 1.13.11.12)| Length = 859 Score = 70.9 bits (172), Expect = 1e-12 Identities = 36/72 (50%), Positives = 49/72 (68%) Frame = -2 Query: 447 SDAKALEAFKRFGSRLVEVEKRILDMNKDPALKNRNGPVKMPYMLLYPNTSDANGGKALG 268 ++ +ALEAF++FG ++ E+EK I + N D LKNR G VKMPY LL+P++ G Sbjct: 795 AEKEALEAFEKFGEKVKEIEKNIDERNDDETLKNRTGLVKMPYTLLFPSSEG-------G 847 Query: 267 LTAMGIPNSVSI 232 +T GIPNSVSI Sbjct: 848 VTGRGIPNSVSI 859
>LOXB_LYCES (P38416) Lipoxygenase B (EC 1.13.11.12)| Length = 859 Score = 70.5 bits (171), Expect = 2e-12 Identities = 36/73 (49%), Positives = 47/73 (64%) Frame = -2 Query: 450 TSDAKALEAFKRFGSRLVEVEKRILDMNKDPALKNRNGPVKMPYMLLYPNTSDANGGKAL 271 T D + L AF+RFG L ++E RI+ MN + KNR+GPV +PY LL+P + + Sbjct: 794 TKDKEPLVAFERFGKMLSDIENRIMIMNSHKSWKNRSGPVNVPYTLLFPTSEE------- 846 Query: 270 GLTAMGIPNSVSI 232 GLT GIPNSVSI Sbjct: 847 GLTGKGIPNSVSI 859
>LOX1_SOLTU (P37831) Lipoxygenase 1 (EC 1.13.11.12)| Length = 861 Score = 70.1 bits (170), Expect = 2e-12 Identities = 36/73 (49%), Positives = 45/73 (61%) Frame = -2 Query: 450 TSDAKALEAFKRFGSRLVEVEKRILDMNKDPALKNRNGPVKMPYMLLYPNTSDANGGKAL 271 T D + L AF RFG +L ++EK+I+ N D L NR+GPV PY LL+P + Sbjct: 796 TKDKEPLAAFDRFGKKLTDIEKQIIQRNGDNILTNRSGPVNAPYTLLFPTSEG------- 848 Query: 270 GLTAMGIPNSVSI 232 GLT GIPNSVSI Sbjct: 849 GLTGKGIPNSVSI 861
>LOXA_LYCES (P38415) Lipoxygenase A (EC 1.13.11.12)| Length = 860 Score = 68.9 bits (167), Expect = 5e-12 Identities = 35/73 (47%), Positives = 46/73 (63%) Frame = -2 Query: 450 TSDAKALEAFKRFGSRLVEVEKRILDMNKDPALKNRNGPVKMPYMLLYPNTSDANGGKAL 271 T D + L AF+RFG++L ++EK+I+ N + L NR GPV PY LL+P + Sbjct: 795 TKDKEPLAAFERFGNKLTDIEKQIMQRNGNNILTNRTGPVNAPYTLLFPTSEG------- 847 Query: 270 GLTAMGIPNSVSI 232 GLT GIPNSVSI Sbjct: 848 GLTGKGIPNSVSI 860
>LOXC2_ORYSA (Q84YK8) Probable lipoxygenase 8, chloroplast precursor (EC| 1.13.11.12) Length = 941 Score = 52.4 bits (124), Expect = 5e-07 Identities = 35/72 (48%), Positives = 41/72 (56%) Frame = -2 Query: 447 SDAKALEAFKRFGSRLVEVEKRILDMNKDPALKNRNGPVKMPYMLLYPNTSDANGGKALG 268 SDA A+ F +RL E+E I NKD LKNR G +PY L+ P SDA G Sbjct: 877 SDAAVQAAYAGFTARLKEIEGVIDGRNKDRKLKNRCGAGILPYQLMKP-FSDA------G 929 Query: 267 LTAMGIPNSVSI 232 +T MGIPNS SI Sbjct: 930 VTGMGIPNSTSI 941
>LOXC1_ORYSA (P38419) Lipoxygenase 7, chloroplast precursor (EC 1.13.11.12)| Length = 924 Score = 52.0 bits (123), Expect = 7e-07 Identities = 32/72 (44%), Positives = 39/72 (54%) Frame = -2 Query: 447 SDAKALEAFKRFGSRLVEVEKRILDMNKDPALKNRNGPVKMPYMLLYPNTSDANGGKALG 268 SDA A+ F +RL E+E I NKD LKNR G +PY L+ P + G Sbjct: 860 SDAAVQAAYDGFAARLKEIEGVIDGRNKDRKLKNRCGAGILPYQLMKPFSDS-------G 912 Query: 267 LTAMGIPNSVSI 232 +T MGIPNS SI Sbjct: 913 VTGMGIPNSTSI 924
>LOX21_HORVU (P93184) Lipoxygenase 2.1, chloroplast precursor (EC 1.13.11.12)| (LOX-100) (LOX2:Hv:1) Length = 936 Score = 49.7 bits (117), Expect = 3e-06 Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 3/76 (3%) Frame = -2 Query: 450 TSDAKALEAFKRFGSRLVEVEKRILDMNKDPALKNRNGPVKMPYMLLYPNTSDANGGKAL 271 T D +AF+ F ++ +++ + N DP KNR+G +PY+LL P+ D G Sbjct: 861 TKDGVINQAFEEFKESTRKIVEQVDEWNNDPDRKNRHGAGMVPYVLLRPSDGDPTDGDPT 920 Query: 270 G---LTAMGIPNSVSI 232 + MGIPNS+SI Sbjct: 921 DEKMVMEMGIPNSISI 936
>LOX22_HORVU (Q8GSM3) Lipoxygenase 2.2, chloroplast precursor (EC 1.13.11.12)| (LOX2:Hv:2) Length = 932 Score = 47.0 bits (110), Expect = 2e-05 Identities = 25/71 (35%), Positives = 44/71 (61%) Frame = -2 Query: 444 DAKALEAFKRFGSRLVEVEKRILDMNKDPALKNRNGPVKMPYMLLYPNTSDANGGKALGL 265 D + +AF+ F ++ ++ +++ + NKD + +NR+G +PY+LL P + N A + Sbjct: 864 DGEVDKAFQVFQKKMRDIAEQVEEWNKDDSRRNRHGAGVVPYVLLRP--LNGNPMDAKTV 921 Query: 264 TAMGIPNSVSI 232 MGIPNS+SI Sbjct: 922 MEMGIPNSISI 932
>LOX5_ORYSA (Q7XV13) Putative lipoxygenase 5 (EC 1.13.11.12)| Length = 899 Score = 47.0 bits (110), Expect = 2e-05 Identities = 26/73 (35%), Positives = 40/73 (54%) Frame = -2 Query: 450 TSDAKALEAFKRFGSRLVEVEKRILDMNKDPALKNRNGPVKMPYMLLYPNTSDANGGKAL 271 T+D AL A + F + + E+ I N DP+ +NR G +PY L+ P++ Sbjct: 834 TADPAALAAAREFAADVRRAEEEIERRNADPSRRNRCGAGVLPYELMAPSSGP------- 886 Query: 270 GLTAMGIPNSVSI 232 G+T G+PNSV+I Sbjct: 887 GITCRGVPNSVTI 899
>LOX23_HORVU (Q8GSM2) Lipoxygenase 2.3, chloroplast precursor (EC 1.13.11.12)| (LOX2:Hv:3) Length = 896 Score = 45.1 bits (105), Expect = 8e-05 Identities = 28/65 (43%), Positives = 35/65 (53%) Frame = -2 Query: 426 AFKRFGSRLVEVEKRILDMNKDPALKNRNGPVKMPYMLLYPNTSDANGGKALGLTAMGIP 247 AF++F RL E E I N +P KNR G +PY LL P + G+T GIP Sbjct: 839 AFEKFSGRLKEAEGTIDMRNNNPENKNRCGAGIVPYELLKPFSEP-------GVTGRGIP 891 Query: 246 NSVSI 232 NS+SI Sbjct: 892 NSISI 896
>LOX6_ORYSA (Q8H016) Probable lipoxygenase 6 (EC 1.13.11.12)| Length = 918 Score = 42.0 bits (97), Expect = 7e-04 Identities = 26/73 (35%), Positives = 37/73 (50%) Frame = -2 Query: 450 TSDAKALEAFKRFGSRLVEVEKRILDMNKDPALKNRNGPVKMPYMLLYPNTSDANGGKAL 271 T+D A+ A F + + E+ I N D KNR G +PY LL P++ Sbjct: 853 TADEAAVAAHGMFAADVRRAEETIERRNADHGRKNRCGAGVLPYELLAPSSPP------- 905 Query: 270 GLTAMGIPNSVSI 232 G+T G+PNS+SI Sbjct: 906 GVTCRGVPNSISI 918
>LOXC_ARATH (P38418) Lipoxygenase, chloroplast precursor (EC 1.13.11.12)| Length = 896 Score = 39.3 bits (90), Expect = 0.005 Identities = 25/65 (38%), Positives = 35/65 (53%) Frame = -2 Query: 426 AFKRFGSRLVEVEKRILDMNKDPALKNRNGPVKMPYMLLYPNTSDANGGKALGLTAMGIP 247 AF+RF +L +E I + N + LKNR G + Y LL P + G+T MG+P Sbjct: 839 AFERFKGKLQYLEGVIDERNVNITLKNRAGAGVVKYELLKPTSEH-------GVTGMGVP 891 Query: 246 NSVSI 232 S+SI Sbjct: 892 YSISI 896
>PANK1_HUMAN (Q8TE04) Pantothenate kinase 1 (EC 2.7.1.33) (Pantothenic acid| kinase 1) (hPanK1) (hPanK) Length = 598 Score = 31.6 bits (70), Expect = 0.95 Identities = 13/27 (48%), Positives = 17/27 (62%) Frame = -1 Query: 439 QGARGVQEVRQPAGGGREADPRHEQGP 359 +G +G +EV + AGGG E RH Q P Sbjct: 71 RGGQGAEEVGESAGGGEERRVRHPQAP 97
>ATF2_CHICK (O93602) Cyclic AMP-dependent transcription factor ATF-2| (Activating transcription factor 2) Length = 487 Score = 31.2 bits (69), Expect = 1.2 Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 10/90 (11%) Frame = +2 Query: 35 HCPHPINIIYDTIIIFHHPLIPGN*LPQPPRSQ*KV----------TQYTLRDTNRSMTS 184 H P + ++ ++ P IPG PQP +S+ K+ Q T DT + S Sbjct: 223 HVPAAVPLVRPVTMVPSIPGIPGPSSPQPVQSEAKLRLKAALTQQHPQVTNGDTAKGHPS 282 Query: 185 GRTTTERRKQRPCSAQMETLLGMPMAVSPS 274 G T+ + RP S Q SP+ Sbjct: 283 GLVRTQSEEPRPQSLQQPATSTTETPASPA 312
>CMGA_PIG (P04404) Chromogranin A precursor (CgA) [Contains: Pancreastatin;| Parastatin; WE-14] (Fragment) Length = 446 Score = 31.2 bits (69), Expect = 1.2 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 2/49 (4%) Frame = -1 Query: 442 RQGARGVQEVRQPAGG--GREADPRHEQGPGAQEPERAREDALHAAVPQ 302 R GA+ ++ P+ G RE P EQGP A+ E +A AVP+ Sbjct: 185 RPGAQAEEDHEGPSQGPVDREKGPSAEQGPQAEREEEEEAEAGEKAVPE 233
>PRTP_HHV11 (P10212) Processing and transport protein (Infected cell protein| 18.5) (ICP18.5 protein) Length = 785 Score = 30.8 bits (68), Expect = 1.6 Identities = 19/43 (44%), Positives = 24/43 (55%) Frame = -1 Query: 439 QGARGVQEVRQPAGGGREADPRHEQGPGAQEPERAREDALHAA 311 +GARG+ P GGG + D R +GPG Q PE + A AA Sbjct: 456 EGARGLGA---PGGGGEDEDRR--RGPGGQGPETWGDIATQAA 493
>GATA6_HUMAN (Q92908) Transcription factor GATA-6 (GATA-binding factor 6)| Length = 449 Score = 30.8 bits (68), Expect = 1.6 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 3/42 (7%) Frame = +1 Query: 37 LSSPYQHHLRHNHHFPSSTNPW---QLITATTQKPMKSNTIH 153 L+ Y HH H+HH PS +P+ L A P ++ +H Sbjct: 173 LNGTYHHHHHHHHHHPSPYSPYVGAPLTPAWPAGPFETPVLH 214
>ATF2_MOUSE (P16951) Cyclic AMP-dependent transcription factor ATF-2| (Activating transcription factor 2) (cAMP response element-binding protein CRE-BP1) (MXBP protein) Length = 487 Score = 30.8 bits (68), Expect = 1.6 Identities = 27/101 (26%), Positives = 40/101 (39%), Gaps = 10/101 (9%) Frame = +2 Query: 35 HCPHPINIIYDTIIIFHHPLIPGN*LPQPPRSQ*K------VTQ----YTLRDTNRSMTS 184 H P + ++ ++ P IPG PQP +S+ K +TQ T DT + S Sbjct: 223 HVPAAVPLVRPVTMVPSVPGIPGPSSPQPVQSEAKMRLKAALTQQHPPVTNGDTVKGHGS 282 Query: 185 GRTTTERRKQRPCSAQMETLLGMPMAVSPSAFPPLASDVLG 307 G T+ + RP S Q SP+ P + G Sbjct: 283 GLVRTQSEESRPQSLQQPATSTTETPASPAHTTPQTQNTSG 323
>ATF2_HUMAN (P15336) Cyclic AMP-dependent transcription factor ATF-2| (Activating transcription factor 2) (cAMP response element-binding protein CRE-BP1) (HB16) Length = 487 Score = 30.4 bits (67), Expect = 2.1 Identities = 27/101 (26%), Positives = 39/101 (38%), Gaps = 10/101 (9%) Frame = +2 Query: 35 HCPHPINIIYDTIIIFHHPLIPGN*LPQPPRSQ*K------VTQ----YTLRDTNRSMTS 184 H P + ++ ++ P IPG PQP +S+ K +TQ T DT + S Sbjct: 223 HVPAAVPLVRPVTMVPSVPGIPGPSSPQPVQSEAKMRLKAALTQQHPPVTNGDTVKGHGS 282 Query: 185 GRTTTERRKQRPCSAQMETLLGMPMAVSPSAFPPLASDVLG 307 G T+ + RP S Q SP+ P G Sbjct: 283 GLVRTQSEESRPQSLQQPATSTTETPASPAHTTPQTQSTSG 323
>TULP4_HUMAN (Q9NRJ4) Tubby-like protein 4 (Tubby superfamily protein)| Length = 1544 Score = 30.0 bits (66), Expect = 2.8 Identities = 16/46 (34%), Positives = 22/46 (47%) Frame = +2 Query: 149 YTLRDTNRSMTSGRTTTERRKQRPCSAQMETLLGMPMAVSPSAFPP 286 YTL S T T TE++ +PCS+ L +P P+ PP Sbjct: 915 YTLPGPGSSATLRLTATEKKVPQPCSSATLNRLTVPRYSIPTGDPP 960
>VE2_BPV3 (Q8BDD6) Regulatory protein E2| Length = 414 Score = 29.6 bits (65), Expect = 3.6 Identities = 13/37 (35%), Positives = 16/37 (43%) Frame = -1 Query: 412 RQPAGGGREADPRHEQGPGAQEPERAREDALHAAVPQ 302 R P GGGR +QGPG P E + P+ Sbjct: 279 RPPGGGGRRGSRDQQQGPGGPAPPSPGEVGTRSGPPE 315
>PRTP_HHV1A (P12835) Processing and transport protein (Infected cell protein| 18.5) (ICP18.5 protein) Length = 785 Score = 29.3 bits (64), Expect = 4.7 Identities = 16/39 (41%), Positives = 21/39 (53%) Frame = -1 Query: 427 GVQEVRQPAGGGREADPRHEQGPGAQEPERAREDALHAA 311 G + + P GGG + D R +GPG Q PE + A AA Sbjct: 457 GTRGLGAPGGGGEDEDRR--RGPGGQGPETWGDIATQAA 493
>HXA1_MOUSE (P09022) Homeobox protein Hox-A1 (Hox-1.6) (Homeotic protein| ERA-1-993) (Early retinoic acid 1) (Homeoboxless protein ERA-1-399) Length = 331 Score = 29.3 bits (64), Expect = 4.7 Identities = 9/18 (50%), Positives = 13/18 (72%) Frame = +1 Query: 37 LSSPYQHHLRHNHHFPSS 90 +SSP+ HH H+HH P + Sbjct: 56 ISSPHHHHHHHHHHHPQT 73
>TULP4_MOUSE (Q9JIL5) Tubby-like protein 4 (Tubby superfamily protein)| Length = 1547 Score = 28.9 bits (63), Expect = 6.2 Identities = 15/46 (32%), Positives = 22/46 (47%) Frame = +2 Query: 149 YTLRDTNRSMTSGRTTTERRKQRPCSAQMETLLGMPMAVSPSAFPP 286 YTL S T T TE++ +PC++ L +P P+ PP Sbjct: 918 YTLPGPGSSATLRLTATEKKVPQPCTSATLNRLTVPRYSIPTGDPP 963
>ATF2_RAT (Q00969) Cyclic AMP-dependent transcription factor ATF-2| (Activating transcription factor 2) (cAMP response element-binding protein CRE-BP1) Length = 487 Score = 28.9 bits (63), Expect = 6.2 Identities = 26/101 (25%), Positives = 39/101 (38%), Gaps = 10/101 (9%) Frame = +2 Query: 35 HCPHPINIIYDTIIIFHHPLIPGN*LPQPPRSQ*K------VTQ----YTLRDTNRSMTS 184 H P + ++ ++ P IPG PQP +S+ K +TQ T DT + S Sbjct: 223 HVPAAVPLVRPVTMVPSVPGIPGPSSPQPVQSEAKMRLKAALTQQHPPVTNGDTVKGHGS 282 Query: 185 GRTTTERRKQRPCSAQMETLLGMPMAVSPSAFPPLASDVLG 307 G + + RP S Q SP+ P + G Sbjct: 283 GLVRAQSEESRPQSLQQPATSTTETPASPAHTTPQTQNTSG 323
>HAIR_HUMAN (O43593) Protein hairless| Length = 1189 Score = 28.5 bits (62), Expect = 8.1 Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%) Frame = -1 Query: 439 QGARGVQEVRQPAGGGREADP-RHEQGPGAQEPERARED 326 QGA G QEVR + G ++ D +H++ G Q+ + + +D Sbjct: 441 QGAGGWQEVRDTSIGNKDVDSGQHDEQKGPQDGQASLQD 479
>TRUB_GLOVI (Q7MBB8) tRNA pseudouridine synthase B (EC 5.4.99.-) (tRNA| pseudouridine 55 synthase) (Psi55 synthase) (tRNA-uridine isomerase) (tRNA pseudouridylate synthase) Length = 292 Score = 28.5 bits (62), Expect = 8.1 Identities = 19/60 (31%), Positives = 28/60 (46%) Frame = +2 Query: 221 CSAQMETLLGMPMAVSPSAFPPLASDVLGYSSM*GIFTGPFRFLSAGSLFMSRIRFSTST 400 C A++ +LG P A+ VL + G T RFLS G ++ + +RF ST Sbjct: 18 CIARLRRVLGERRIGHGGTLDPAATGVLPVAV--GRATRLLRFLSEGKVYRATVRFGLST 75
>IER5_HUMAN (Q5VY09) Immediate early response gene 5 protein| Length = 327 Score = 28.5 bits (62), Expect = 8.1 Identities = 12/24 (50%), Positives = 15/24 (62%) Frame = -1 Query: 415 VRQPAGGGREADPRHEQGPGAQEP 344 +R+ GGGRE + E GP A EP Sbjct: 281 LRKSPGGGREEEEGEESGPEAAEP 304
>ADRB3_MACMU (Q28524) Beta-3 adrenergic receptor (Beta-3 adrenoceptor) (Beta-3| adrenoreceptor) Length = 418 Score = 28.5 bits (62), Expect = 8.1 Identities = 13/27 (48%), Positives = 15/27 (55%) Frame = +3 Query: 366 CSCRGSASRPPPAGCRTS*TPRAPWRP 446 C C G R P A R + +PRAP RP Sbjct: 361 CHCGGRLPREPCAADRPASSPRAPLRP 387 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 58,713,398 Number of Sequences: 219361 Number of extensions: 1169695 Number of successful extensions: 4672 Number of sequences better than 10.0: 44 Number of HSP's better than 10.0 without gapping: 4096 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4604 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2735358828 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
